Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATCCATCTAAAACTCGGTTATTAATACTCATTTCCAAGCTCCGTTGAGTTCTTGGGCGTCGAATACAATACATCAATGGAAGGCCAGCAGGTTTTCGAGAATTTCGATTCTCTCTGGTTCTTCTCCACCGTATTCTCCAACAGGACGCCACCGGTCGTTGAAAAGCCCATTCAAAACGACTTCGTTGAGCCTCTCGGAGAAGAAATTGCGACACCCATCACCCGAAATGAGGAAAATGATGTTGGTGAAGAGAAGGAGATGGAAACAGAGGAGATGGAAGAGAAGAGGAGAAAGAATAGAGGAAGGAGGAGTTGGGGTTTGGAACAGAGGAGAAAATTTGTTGTTGGAGAGATAGATCTGAGTTATGCTGTGAAGGAGATTTGTGAATGTTGGTCTTTTGAAGAGATGAGGATTGGAGGTGGGAAGAAGACGAAGAAGATGCCATCATTTGAAGATAGTATGGCCATGAAAGAGCATATCAGATCTTGGGCTTATGCAGTGGCTTGCACTGTTAGATGATCACACTAATTTTAACCATTGTTTTGTTTTATGATGTTTTTTCTATTCGAATTTTGTAATCAGATCTGTATTTTGATGAATAAGTTTGTACGAATTTAGTTCTTAACTTTTCTAAAAATAATGTAATCTCCGTTAACCTTCATTTTCTGAAATTTATTCACCTTGTTTTTTATTGTCTTTCAATTTGGTTGTTTGTGTATTGAAAATTTTGTATCTTTCCTATTCTGTGAATGAGAGCGTAT
mRNA sequence
CATCCATCTAAAACTCGGTTATTAATACTCATTTCCAAGCTCCGTTGAGTTCTTGGGCGTCGAATACAATACATCAATGGAAGGCCAGCAGGTTTTCGAGAATTTCGATTCTCTCTGGTTCTTCTCCACCGTATTCTCCAACAGGACGCCACCGGTCGTTGAAAAGCCCATTCAAAACGACTTCGTTGAGCCTCTCGGAGAAGAAATTGCGACACCCATCACCCGAAATGAGGAAAATGATGTTGGTGAAGAGAAGGAGATGGAAACAGAGGAGATGGAAGAGAAGAGGAGAAAGAATAGAGGAAGGAGGAGTTGGGGTTTGGAACAGAGGAGAAAATTTGTTGTTGGAGAGATAGATCTGAGTTATGCTGTGAAGGAGATTTGTGAATGTTGGTCTTTTGAAGAGATGAGGATTGGAGGTGGGAAGAAGACGAAGAAGATGCCATCATTTGAAGATAGTATGGCCATGAAAGAGCATATCAGATCTTGGGCTTATGCAGTGGCTTGCACTGTTAGATGATCACACTAATTTTAACCATTGTTTTGTTTTATGATGTTTTTTCTATTCGAATTTTGTAATCAGATCTGTATTTTGATGAATAAGTTTGTACGAATTTAGTTCTTAACTTTTCTAAAAATAATGTAATCTCCGTTAACCTTCATTTTCTGAAATTTATTCACCTTGTTTTTTATTGTCTTTCAATTTGGTTGTTTGTGTATTGAAAATTTTGTATCTTTCCTATTCTGTGAATGAGAGCGTAT
Coding sequence (CDS)
ATGGAAGGCCAGCAGGTTTTCGAGAATTTCGATTCTCTCTGGTTCTTCTCCACCGTATTCTCCAACAGGACGCCACCGGTCGTTGAAAAGCCCATTCAAAACGACTTCGTTGAGCCTCTCGGAGAAGAAATTGCGACACCCATCACCCGAAATGAGGAAAATGATGTTGGTGAAGAGAAGGAGATGGAAACAGAGGAGATGGAAGAGAAGAGGAGAAAGAATAGAGGAAGGAGGAGTTGGGGTTTGGAACAGAGGAGAAAATTTGTTGTTGGAGAGATAGATCTGAGTTATGCTGTGAAGGAGATTTGTGAATGTTGGTCTTTTGAAGAGATGAGGATTGGAGGTGGGAAGAAGACGAAGAAGATGCCATCATTTGAAGATAGTATGGCCATGAAAGAGCATATCAGATCTTGGGCTTATGCAGTGGCTTGCACTGTTAGATGA
Protein sequence
MEGQQVFENFDSLWFFSTVFSNRTPPVVEKPIQNDFVEPLGEEIATPITRNEENDVGEEKEMETEEMEEKRRKNRGRRSWGLEQRRKFVVGEIDLSYAVKEICECWSFEEMRIGGGKKTKKMPSFEDSMAMKEHIRSWAYAVACTVR
Homology
BLAST of Pay0006349.1 vs. ExPASy TrEMBL
Match:
A0A5A7UQZ2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002450 PE=4 SV=1)
HSP 1 Score: 295.8 bits (756), Expect = 9.9e-77
Identity = 146/147 (99.32%), Postives = 146/147 (99.32%), Query Frame = 0
Query: 1 MEGQQVFENFDSLWFFSTVFSNRTPPVVEKPIQNDFVEPLGEEIATPITRNEENDVGEEK 60
MEGQQVFENFDSLWFFSTVFSNRTPPVVEKPIQNDFVEPLGEEIATPITRNEENDVGEEK
Sbjct: 1 MEGQQVFENFDSLWFFSTVFSNRTPPVVEKPIQNDFVEPLGEEIATPITRNEENDVGEEK 60
Query: 61 EMETEEMEEKRRKNRGRRSWGLEQRRKFVVGEIDLSYAVKEICECWSFEEMRIGGGKKTK 120
EMETEEMEEKRRKNRGRRSWGLEQRRKFVVGEIDLSYAVKEICECWSFE MRIGGGKKTK
Sbjct: 61 EMETEEMEEKRRKNRGRRSWGLEQRRKFVVGEIDLSYAVKEICECWSFEVMRIGGGKKTK 120
Query: 121 KMPSFEDSMAMKEHIRSWAYAVACTVR 148
KMPSFEDSMAMKEHIRSWAYAVACTVR
Sbjct: 121 KMPSFEDSMAMKEHIRSWAYAVACTVR 147
BLAST of Pay0006349.1 vs. ExPASy TrEMBL
Match:
A0A1S3B8X4 (uncharacterized protein LOC103487056 OS=Cucumis melo OX=3656 GN=LOC103487056 PE=4 SV=1)
HSP 1 Score: 295.8 bits (756), Expect = 9.9e-77
Identity = 146/147 (99.32%), Postives = 146/147 (99.32%), Query Frame = 0
Query: 1 MEGQQVFENFDSLWFFSTVFSNRTPPVVEKPIQNDFVEPLGEEIATPITRNEENDVGEEK 60
MEGQQVFENFDSLWFFSTVFSNRTPPVVEKPIQNDFVEPLGEEIATPITRNEENDVGEEK
Sbjct: 1 MEGQQVFENFDSLWFFSTVFSNRTPPVVEKPIQNDFVEPLGEEIATPITRNEENDVGEEK 60
Query: 61 EMETEEMEEKRRKNRGRRSWGLEQRRKFVVGEIDLSYAVKEICECWSFEEMRIGGGKKTK 120
EMETEEMEEKRRKNRGRRSWGLEQRRKFVVGEIDLSYAVKEICECWSFE MRIGGGKKTK
Sbjct: 61 EMETEEMEEKRRKNRGRRSWGLEQRRKFVVGEIDLSYAVKEICECWSFEVMRIGGGKKTK 120
Query: 121 KMPSFEDSMAMKEHIRSWAYAVACTVR 148
KMPSFEDSMAMKEHIRSWAYAVACTVR
Sbjct: 121 KMPSFEDSMAMKEHIRSWAYAVACTVR 147
BLAST of Pay0006349.1 vs. ExPASy TrEMBL
Match:
A0A0A0LX63 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G470250 PE=4 SV=1)
HSP 1 Score: 270.8 bits (691), Expect = 3.4e-69
Identity = 134/147 (91.16%), Postives = 139/147 (94.56%), Query Frame = 0
Query: 1 MEGQQVFENFDSLWFFSTVFSNRTPPVVEKPIQNDFVEPLGEEIATPITRNEENDVGEEK 60
MEGQQV ENFDSLWFF+TVFSNRTPPVV KPIQNDFV LGEEIATPITRNEEN+V E K
Sbjct: 1 MEGQQVLENFDSLWFFATVFSNRTPPVVGKPIQNDFVGSLGEEIATPITRNEENNVCEAK 60
Query: 61 EMETEEMEEKRRKNRGRRSWGLEQRRKFVVGEIDLSYAVKEICECWSFEEMRIGGGKKTK 120
EMETEE EEKRRKNRG RSWGLEQR+KF+VGEIDLSYAVKEICECWSFEEMRIGGG+KTK
Sbjct: 61 EMETEEREEKRRKNRGGRSWGLEQRKKFIVGEIDLSYAVKEICECWSFEEMRIGGGEKTK 120
Query: 121 KMPSFEDSMAMKEHIRSWAYAVACTVR 148
KMPSFEDSMAMKEHIRSWAYAVACTVR
Sbjct: 121 KMPSFEDSMAMKEHIRSWAYAVACTVR 147
BLAST of Pay0006349.1 vs. ExPASy TrEMBL
Match:
Q58A15 (Uncharacterized protein 7G02 (Fragment) OS=Cucumis melo OX=3656 GN=7G02 PE=2 SV=1)
HSP 1 Score: 188.7 bits (478), Expect = 1.7e-44
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0
Query: 1 MEGQQVFENFDSLWFFSTVFSNRTPPVVEKPIQNDFVEPLGEEIATPITRNEENDVGEEK 60
MEGQQVFENFDSLWFFSTVFSNRTPPVVEKPIQNDFVEPLGEEIATPITRNEENDVGEEK
Sbjct: 5 MEGQQVFENFDSLWFFSTVFSNRTPPVVEKPIQNDFVEPLGEEIATPITRNEENDVGEEK 64
Query: 61 EMETEEMEEKRRKNRGRRSWGLEQRRKFVVGEIDL 96
EMETEEMEEKRRKNRGRRSWGLEQRRKFVVGEIDL
Sbjct: 65 EMETEEMEEKRRKNRGRRSWGLEQRRKFVVGEIDL 99
BLAST of Pay0006349.1 vs. ExPASy TrEMBL
Match:
A0A6J1EGY0 (uncharacterized protein LOC111434099 OS=Cucurbita moschata OX=3662 GN=LOC111434099 PE=4 SV=1)
HSP 1 Score: 181.8 bits (460), Expect = 2.1e-42
Identity = 105/168 (62.50%), Postives = 123/168 (73.21%), Query Frame = 0
Query: 1 MEGQQVFENFDSLWFFSTVFSNRT-PPVVEKPIQNDFVEPLGEEIATPITRNEENDVGEE 60
ME QQV +N DSLWFF+TVFSNRT PPVV+KP Q+DFVEP G EIATPI +N++N VGEE
Sbjct: 1 MEDQQVLQNLDSLWFFATVFSNRTPPPVVQKPTQHDFVEPPGGEIATPIFQNQQN-VGEE 60
Query: 61 KEMETEE-----------MEEKRRKNRGRRSWGLEQRRKFVVGEIDLSYAVKEICECWSF 120
+ + E+ + E+RRK+RGRR WG +R+ +VGE+DLS AVKEICECW
Sbjct: 61 RNIVDEKTNETGGGLGLIITEERRKSRGRR-WGCLGQRRKIVGEMDLSDAVKEICECWLL 120
Query: 121 EEMRIGGGK---------KTKKMPSFEDSMAMKEHIRSWAYAVACTVR 148
E+ RIGGG K KKMP FEDSMAMKEHIRSWAYAVACTVR
Sbjct: 121 EQ-RIGGGNQYQRGGRKMKKKKMPPFEDSMAMKEHIRSWAYAVACTVR 165
BLAST of Pay0006349.1 vs. NCBI nr
Match:
XP_008443476.1 (PREDICTED: uncharacterized protein LOC103487056 [Cucumis melo] >KAA0057057.1 uncharacterized protein E6C27_scaffold96G002450 [Cucumis melo var. makuwa])
HSP 1 Score: 295.8 bits (756), Expect = 2.0e-76
Identity = 146/147 (99.32%), Postives = 146/147 (99.32%), Query Frame = 0
Query: 1 MEGQQVFENFDSLWFFSTVFSNRTPPVVEKPIQNDFVEPLGEEIATPITRNEENDVGEEK 60
MEGQQVFENFDSLWFFSTVFSNRTPPVVEKPIQNDFVEPLGEEIATPITRNEENDVGEEK
Sbjct: 1 MEGQQVFENFDSLWFFSTVFSNRTPPVVEKPIQNDFVEPLGEEIATPITRNEENDVGEEK 60
Query: 61 EMETEEMEEKRRKNRGRRSWGLEQRRKFVVGEIDLSYAVKEICECWSFEEMRIGGGKKTK 120
EMETEEMEEKRRKNRGRRSWGLEQRRKFVVGEIDLSYAVKEICECWSFE MRIGGGKKTK
Sbjct: 61 EMETEEMEEKRRKNRGRRSWGLEQRRKFVVGEIDLSYAVKEICECWSFEVMRIGGGKKTK 120
Query: 121 KMPSFEDSMAMKEHIRSWAYAVACTVR 148
KMPSFEDSMAMKEHIRSWAYAVACTVR
Sbjct: 121 KMPSFEDSMAMKEHIRSWAYAVACTVR 147
BLAST of Pay0006349.1 vs. NCBI nr
Match:
XP_011657601.1 (uncharacterized protein LOC101209234 [Cucumis sativus])
HSP 1 Score: 270.8 bits (691), Expect = 7.0e-69
Identity = 134/147 (91.16%), Postives = 139/147 (94.56%), Query Frame = 0
Query: 1 MEGQQVFENFDSLWFFSTVFSNRTPPVVEKPIQNDFVEPLGEEIATPITRNEENDVGEEK 60
MEGQQV ENFDSLWFF+TVFSNRTPPVV KPIQNDFV LGEEIATPITRNEEN+V E K
Sbjct: 1 MEGQQVLENFDSLWFFATVFSNRTPPVVGKPIQNDFVGSLGEEIATPITRNEENNVCEAK 60
Query: 61 EMETEEMEEKRRKNRGRRSWGLEQRRKFVVGEIDLSYAVKEICECWSFEEMRIGGGKKTK 120
EMETEE EEKRRKNRG RSWGLEQR+KF+VGEIDLSYAVKEICECWSFEEMRIGGG+KTK
Sbjct: 61 EMETEEREEKRRKNRGGRSWGLEQRKKFIVGEIDLSYAVKEICECWSFEEMRIGGGEKTK 120
Query: 121 KMPSFEDSMAMKEHIRSWAYAVACTVR 148
KMPSFEDSMAMKEHIRSWAYAVACTVR
Sbjct: 121 KMPSFEDSMAMKEHIRSWAYAVACTVR 147
BLAST of Pay0006349.1 vs. NCBI nr
Match:
KAE8653211.1 (hypothetical protein Csa_019764 [Cucumis sativus])
HSP 1 Score: 270.8 bits (691), Expect = 7.0e-69
Identity = 134/147 (91.16%), Postives = 139/147 (94.56%), Query Frame = 0
Query: 1 MEGQQVFENFDSLWFFSTVFSNRTPPVVEKPIQNDFVEPLGEEIATPITRNEENDVGEEK 60
MEGQQV ENFDSLWFF+TVFSNRTPPVV KPIQNDFV LGEEIATPITRNEEN+V E K
Sbjct: 33 MEGQQVLENFDSLWFFATVFSNRTPPVVGKPIQNDFVGSLGEEIATPITRNEENNVCEAK 92
Query: 61 EMETEEMEEKRRKNRGRRSWGLEQRRKFVVGEIDLSYAVKEICECWSFEEMRIGGGKKTK 120
EMETEE EEKRRKNRG RSWGLEQR+KF+VGEIDLSYAVKEICECWSFEEMRIGGG+KTK
Sbjct: 93 EMETEEREEKRRKNRGGRSWGLEQRKKFIVGEIDLSYAVKEICECWSFEEMRIGGGEKTK 152
Query: 121 KMPSFEDSMAMKEHIRSWAYAVACTVR 148
KMPSFEDSMAMKEHIRSWAYAVACTVR
Sbjct: 153 KMPSFEDSMAMKEHIRSWAYAVACTVR 179
BLAST of Pay0006349.1 vs. NCBI nr
Match:
XP_038895160.1 (uncharacterized protein LOC120083464 [Benincasa hispida])
HSP 1 Score: 229.2 bits (583), Expect = 2.3e-56
Identity = 122/165 (73.94%), Postives = 134/165 (81.21%), Query Frame = 0
Query: 1 MEGQQVFENFDSLWFFSTVFSNRT-----PPVVEKPIQNDFVEPLGEEIATPITRNEEND 60
MEGQQV EN+DSLWFF+TVFSNRT PPVVE P QNDFVEP GEEIATP+T NE+N+
Sbjct: 1 MEGQQVLENWDSLWFFATVFSNRTPPPPPPPVVENPTQNDFVEPPGEEIATPLTPNEQNN 60
Query: 61 VGEEKEMET-------EEMEEKRRKNRGRRSWGLEQRRKFVVGEIDLSYAVKEICECWSF 120
VG+EK++E E +E+RRKNRGRR WGLEQRRK +VGE+DLSYAVKEICECW F
Sbjct: 61 VGDEKKIENGGGFGIKTEEKEQRRKNRGRRCWGLEQRRK-IVGEMDLSYAVKEICECWLF 120
Query: 121 EEMRIGGG------KKTKKMPSFEDSMAMKEHIRSWAYAVACTVR 148
EE RIGGG KKTKKMP FEDSMAMKEHIRSWAYAVACTVR
Sbjct: 121 EETRIGGGNQYQRKKKTKKMPPFEDSMAMKEHIRSWAYAVACTVR 164
BLAST of Pay0006349.1 vs. NCBI nr
Match:
BAD93608.1 (hypothetical protein, partial [Cucumis melo])
HSP 1 Score: 188.7 bits (478), Expect = 3.5e-44
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0
Query: 1 MEGQQVFENFDSLWFFSTVFSNRTPPVVEKPIQNDFVEPLGEEIATPITRNEENDVGEEK 60
MEGQQVFENFDSLWFFSTVFSNRTPPVVEKPIQNDFVEPLGEEIATPITRNEENDVGEEK
Sbjct: 5 MEGQQVFENFDSLWFFSTVFSNRTPPVVEKPIQNDFVEPLGEEIATPITRNEENDVGEEK 64
Query: 61 EMETEEMEEKRRKNRGRRSWGLEQRRKFVVGEIDL 96
EMETEEMEEKRRKNRGRRSWGLEQRRKFVVGEIDL
Sbjct: 65 EMETEEMEEKRRKNRGRRSWGLEQRRKFVVGEIDL 99
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7UQZ2 | 9.9e-77 | 99.32 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A1S3B8X4 | 9.9e-77 | 99.32 | uncharacterized protein LOC103487056 OS=Cucumis melo OX=3656 GN=LOC103487056 PE=... | [more] |
A0A0A0LX63 | 3.4e-69 | 91.16 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G470250 PE=4 SV=1 | [more] |
Q58A15 | 1.7e-44 | 100.00 | Uncharacterized protein 7G02 (Fragment) OS=Cucumis melo OX=3656 GN=7G02 PE=2 SV=... | [more] |
A0A6J1EGY0 | 2.1e-42 | 62.50 | uncharacterized protein LOC111434099 OS=Cucurbita moschata OX=3662 GN=LOC1114340... | [more] |
Match Name | E-value | Identity | Description | |
XP_008443476.1 | 2.0e-76 | 99.32 | PREDICTED: uncharacterized protein LOC103487056 [Cucumis melo] >KAA0057057.1 unc... | [more] |
XP_011657601.1 | 7.0e-69 | 91.16 | uncharacterized protein LOC101209234 [Cucumis sativus] | [more] |
KAE8653211.1 | 7.0e-69 | 91.16 | hypothetical protein Csa_019764 [Cucumis sativus] | [more] |
XP_038895160.1 | 2.3e-56 | 73.94 | uncharacterized protein LOC120083464 [Benincasa hispida] | [more] |
BAD93608.1 | 3.5e-44 | 100.00 | hypothetical protein, partial [Cucumis melo] | [more] |
Match Name | E-value | Identity | Description | |
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Type |
Pay0006349 | Pay0006349 | gene |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Pay0006349.1-exon | Pay0006349.1-exon-chr12:22178991..22179752 | exon |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Pay0006349.1-five_prime_utr | Pay0006349.1-five_prime_utr-chr12:22178991..22179066 | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Pay0006349.1-cds | Pay0006349.1-cds-chr12:22179067..22179510 | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Pay0006349.1-three_prime_utr | Pay0006349.1-three_prime_utr-chr12:22179511..22179752 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
Pay0006349.1 | Pay0006349.1-protein | polypeptide |