Pay0004755.1 (mRNA) Melon (Payzawat) v1

Overview


Name	Pay0004755.1
Type	mRNA
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Photosystem I assembly protein Ycf4
Location	Contig00288_ERROPOS136135: 45439 .. 45993 (-)
Sequence length	555
RNA-Seq Expression	Pay0004755.1
Synteny	Pay0004755.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTGGCGATCAGAACGTATATGGATAGAATTTATAAGAGGATCTCGAAAAATCAGCAATTTCTGCTGGGCCTTTATCCTTTTTTTAGGTTCATTAGGGTTTTTATTGGTTGGAACTTCCAGTTATCTTGGTAGGGATTTGATAGCTTTATTTCCGTCTCAGCAAATAATTTTTTTTCCACAGGGGATCGTAATGTCTTTCTATGGGATTGCCGGTCTCTTTATTAGCTCCTATTTGTGGTGCACAATTTTGTGGAATGTAGGTAGCGGTTATGATCGATTCGATAGAAAAGAAGAAATAGTGTCTATTTTTCGTTGGGGGTTTCCTGGAAAAAATCGTCGAATCTTCCTACGATTCCTTATGAAAGACATTCAGTCCATCAGAATAGAAGTTAAAGAGGGTATTTATGCACGTCGTGTCCTTTATATGGAAATAAGAGGCCAAGGGGCCATTCCCTTGACGCGTACCGATCAGAATCTGACCCCACGAGAAATTGAGCAAAAGGCTGCCGAATTGGCCTATTTCTTGCGTGTACCAATTGAAGTTTTTTGA

mRNA sequence

ATGAATTGGCGATCAGAACGTATATGGATAGAATTTATAAGAGGATCTCGAAAAATCAGCAATTTCTGCTGGGCCTTTATCCTTTTTTTAGGTTCATTAGGGTTTTTATTGGTTGGAACTTCCAGTTATCTTGGTAGGGATTTGATAGCTTTATTTCCGTCTCAGCAAATAATTTTTTTTCCACAGGGGATCGTAATGTCTTTCTATGGGATTGCCGGTCTCTTTATTAGCTCCTATTTGTGGTGCACAATTTTGTGGAATGTAGGTAGCGGTTATGATCGATTCGATAGAAAAGAAGAAATAGTGTCTATTTTTCGTTGGGGGTTTCCTGGAAAAAATCGTCGAATCTTCCTACGATTCCTTATGAAAGACATTCAGTCCATCAGAATAGAAGTTAAAGAGGGTATTTATGCACGTCGTGTCCTTTATATGGAAATAAGAGGCCAAGGGGCCATTCCCTTGACGCGTACCGATCAGAATCTGACCCCACGAGAAATTGAGCAAAAGGCTGCCGAATTGGCCTATTTCTTGCGTGTACCAATTGAAGTTTTTTGA

Coding sequence (CDS)

ATGAATTGGCGATCAGAACGTATATGGATAGAATTTATAAGAGGATCTCGAAAAATCAGCAATTTCTGCTGGGCCTTTATCCTTTTTTTAGGTTCATTAGGGTTTTTATTGGTTGGAACTTCCAGTTATCTTGGTAGGGATTTGATAGCTTTATTTCCGTCTCAGCAAATAATTTTTTTTCCACAGGGGATCGTAATGTCTTTCTATGGGATTGCCGGTCTCTTTATTAGCTCCTATTTGTGGTGCACAATTTTGTGGAATGTAGGTAGCGGTTATGATCGATTCGATAGAAAAGAAGAAATAGTGTCTATTTTTCGTTGGGGGTTTCCTGGAAAAAATCGTCGAATCTTCCTACGATTCCTTATGAAAGACATTCAGTCCATCAGAATAGAAGTTAAAGAGGGTATTTATGCACGTCGTGTCCTTTATATGGAAATAAGAGGCCAAGGGGCCATTCCCTTGACGCGTACCGATCAGAATCTGACCCCACGAGAAATTGAGCAAAAGGCTGCCGAATTGGCCTATTTCTTGCGTGTACCAATTGAAGTTTTTTGA

Protein sequence

MNWRSERIWIEFIRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLIALFPSQQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEVF

Homology

[Close]

BLAST of Pay0004755.1 vs. ExPASy Swiss-Prot
Match: Q2QD78 (Photosystem I assembly protein Ycf4 OS=Cucumis sativus OX=3659 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 2.8e-102
Identity = 182/184 (98.91%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MNWRSERIWIEFIRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLIALFPSQQIIFF 60
           MNWRSERIWIEF+RGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLI+LFPSQQIIFF
Sbjct: 1   MNWRSERIWIEFLRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLISLFPSQQIIFF 60

Query: 61  PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF 120
           PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF
Sbjct: 61  PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF 120

Query: 121 LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP 180
           LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP
Sbjct: 121 LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP 180

Query: 181 IEVF 185
           IEVF
Sbjct: 181 IEVF 184

[Close]

BLAST of Pay0004755.1 vs. ExPASy Swiss-Prot
Match: A0ZZ46 (Photosystem I assembly protein Ycf4 OS=Gossypium barbadense OX=3634 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 3.0e-96
Identity = 171/184 (92.93%), Postives = 177/184 (96.20%), Query Frame = 0


Query: 1   MNWRSERIWIEFIRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLIALFPSQQIIFF 60
           M+WRSE IWIEFI GSRK SNFCWAFILF GSLGFLLVGTSSYLGR+LI+LFPSQQI+FF
Sbjct: 1   MSWRSESIWIEFIVGSRKTSNFCWAFILFFGSLGFLLVGTSSYLGRNLISLFPSQQIVFF 60

Query: 61  PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF 120
           PQGIVMSFYGIAGLFISSYLWCTI WNVGSGYDRFDRKE IV IFRWGFPGKNRRIFLRF
Sbjct: 61  PQGIVMSFYGIAGLFISSYLWCTIFWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRF 120

Query: 121 LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP 180
           LMKDIQSIRIEVKEGIYARRVLYMEIRGQGA+PLTRTD+NLTPREIEQKAAELAYFLRVP
Sbjct: 121 LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAVPLTRTDENLTPREIEQKAAELAYFLRVP 180

Query: 181 IEVF 185
           IEVF
Sbjct: 181 IEVF 184

[Close]

BLAST of Pay0004755.1 vs. ExPASy Swiss-Prot
Match: Q2L913 (Photosystem I assembly protein Ycf4 OS=Gossypium hirsutum OX=3635 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 3.0e-96
Identity = 171/184 (92.93%), Postives = 177/184 (96.20%), Query Frame = 0


Query: 1   MNWRSERIWIEFIRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLIALFPSQQIIFF 60
           M+WRSE IWIEFI GSRK SNFCWAFILF GSLGFLLVGTSSYLGR+LI+LFPSQQI+FF
Sbjct: 1   MSWRSESIWIEFIVGSRKTSNFCWAFILFFGSLGFLLVGTSSYLGRNLISLFPSQQIVFF 60

Query: 61  PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF 120
           PQGIVMSFYGIAGLFISSYLWCTI WNVGSGYDRFDRKE IV IFRWGFPGKNRRIFLRF
Sbjct: 61  PQGIVMSFYGIAGLFISSYLWCTIFWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRF 120

Query: 121 LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP 180
           LMKDIQSIRIEVKEGIYARRVLYMEIRGQGA+PLTRTD+NLTPREIEQKAAELAYFLRVP
Sbjct: 121 LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAVPLTRTDENLTPREIEQKAAELAYFLRVP 180

Query: 181 IEVF 185
           IEVF
Sbjct: 181 IEVF 184

[Close]

BLAST of Pay0004755.1 vs. ExPASy Swiss-Prot
Match: Q09G35 (Photosystem I assembly protein Ycf4 OS=Platanus occidentalis OX=4403 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 3.0e-96
Identity = 172/184 (93.48%), Postives = 176/184 (95.65%), Query Frame = 0


Query: 1   MNWRSERIWIEFIRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLIALFPSQQIIFF 60
           MNWRSERIWIE I GSRK SNFCWAFILFLGSLGFLLVGTSSYLGR+LI+LFPSQQIIFF
Sbjct: 1   MNWRSERIWIELITGSRKTSNFCWAFILFLGSLGFLLVGTSSYLGRNLISLFPSQQIIFF 60

Query: 61  PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF 120
           PQGIVMSFYGIAGLFISSYLWCTI WNVGSGYDRFDRKE IV IFRWGFPGKNRRIFLRF
Sbjct: 61  PQGIVMSFYGIAGLFISSYLWCTISWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRF 120

Query: 121 LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP 180
            MKDIQSIRIEVKEG+Y RRVLYMEIRGQGAIPLTRTD+NLTPREIEQKAAELAYFLRVP
Sbjct: 121 FMKDIQSIRIEVKEGLYPRRVLYMEIRGQGAIPLTRTDENLTPREIEQKAAELAYFLRVP 180

Query: 181 IEVF 185
           IEVF
Sbjct: 181 IEVF 184

[Close]

BLAST of Pay0004755.1 vs. ExPASy Swiss-Prot
Match: Q9GDV1 (Photosystem I assembly protein Ycf4 OS=Carpobrotus chilensis OX=142000 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 3.7e-94
Identity = 167/184 (90.76%), Postives = 175/184 (95.11%), Query Frame = 0


Query: 1   MNWRSERIWIEFIRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLIALFPSQQIIFF 60
           MNWRS+RIWIE I GSRKISNFCWAFILFLGSLGFLLVG SSYLGR+LI+LFP QQI+FF
Sbjct: 1   MNWRSKRIWIELITGSRKISNFCWAFILFLGSLGFLLVGISSYLGRNLISLFPPQQILFF 60

Query: 61  PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF 120
           PQGIVMSFYGIAGLFISSYLWCTI WNVGSGYDRFDRKE IV IFRWGFPGKNRRIFLRF
Sbjct: 61  PQGIVMSFYGIAGLFISSYLWCTISWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRF 120

Query: 121 LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP 180
           L+KDIQSIRIE+KEGIY RRVLY+EIRGQGAIPLTRTD NLTPREIEQKAAELAYFLR+P
Sbjct: 121 LIKDIQSIRIELKEGIYTRRVLYLEIRGQGAIPLTRTDDNLTPREIEQKAAELAYFLRIP 180

Query: 181 IEVF 185
           IEVF
Sbjct: 181 IEVF 184

[Close]

BLAST of Pay0004755.1 vs. ExPASy TrEMBL
Match: A0A1S4EU22 (Photosystem I assembly protein Ycf4 OS=Cucumis melo OX=3656 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 2.7e-100
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MNWRSERIWIEFIRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLIALFPSQQIIFF 60
           MNWRSERIWIEFIRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLIALFPSQQIIFF
Sbjct: 1   MNWRSERIWIEFIRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLIALFPSQQIIFF 60

Query: 61  PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF 120
           PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF
Sbjct: 61  PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF 120

Query: 121 LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP 180
           LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP
Sbjct: 121 LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP 180

Query: 181 IEVF 185
           IEVF
Sbjct: 181 IEVF 184

[Close]

BLAST of Pay0004755.1 vs. ExPASy TrEMBL
Match: A0A249S031 (Photosystem I assembly protein Ycf4 OS=Cucumis melo var. cantalupensis OX=3658 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 2.7e-100
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MNWRSERIWIEFIRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLIALFPSQQIIFF 60
           MNWRSERIWIEFIRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLIALFPSQQIIFF
Sbjct: 1   MNWRSERIWIEFIRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLIALFPSQQIIFF 60

Query: 61  PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF 120
           PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF
Sbjct: 61  PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF 120

Query: 121 LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP 180
           LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP
Sbjct: 121 LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP 180

Query: 181 IEVF 185
           IEVF
Sbjct: 181 IEVF 184

[Close]

BLAST of Pay0004755.1 vs. ExPASy TrEMBL
Match: A0A286NG24 (Photosystem I assembly protein Ycf4 OS=Cucumis melo var. flexuosus OX=1120798 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 2.7e-100
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MNWRSERIWIEFIRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLIALFPSQQIIFF 60
           MNWRSERIWIEFIRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLIALFPSQQIIFF
Sbjct: 1   MNWRSERIWIEFIRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLIALFPSQQIIFF 60

Query: 61  PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF 120
           PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF
Sbjct: 61  PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF 120

Query: 121 LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP 180
           LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP
Sbjct: 121 LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP 180

Query: 181 IEVF 185
           IEVF
Sbjct: 181 IEVF 184

[Close]

BLAST of Pay0004755.1 vs. ExPASy TrEMBL
Match: A0A249RXT9 (Photosystem I assembly protein Ycf4 OS=Cucumis melo subsp. agrestis OX=217619 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 2.7e-100
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MNWRSERIWIEFIRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLIALFPSQQIIFF 60
           MNWRSERIWIEFIRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLIALFPSQQIIFF
Sbjct: 1   MNWRSERIWIEFIRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLIALFPSQQIIFF 60

Query: 61  PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF 120
           PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF
Sbjct: 61  PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF 120

Query: 121 LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP 180
           LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP
Sbjct: 121 LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP 180

Query: 181 IEVF 185
           IEVF
Sbjct: 181 IEVF 184

[Close]

BLAST of Pay0004755.1 vs. ExPASy TrEMBL
Match: A0A249RZ43 (Photosystem I assembly protein Ycf4 OS=Cucumis melo var. dudaim OX=2034236 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 2.7e-100
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MNWRSERIWIEFIRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLIALFPSQQIIFF 60
           MNWRSERIWIEFIRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLIALFPSQQIIFF
Sbjct: 1   MNWRSERIWIEFIRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLIALFPSQQIIFF 60

Query: 61  PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF 120
           PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF
Sbjct: 61  PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF 120

Query: 121 LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP 180
           LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP
Sbjct: 121 LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP 180

Query: 181 IEVF 185
           IEVF
Sbjct: 181 IEVF 184

[Close]

BLAST of Pay0004755.1 vs. NCBI nr
Match: YP_004841794.1 (photosystem I assembly protein ycf4 [Cucumis melo subsp. melo] >YP_009860084.1 photosystem I assembly protein Ycf4 [Cucumis melo subsp. agrestis] >ASY96629.1 photosystem I assembly protein Ycf4 [Cucumis melo var. conomon] >ASY96717.1 photosystem I assembly protein Ycf4 [Cucumis melo var. makuwa] >ASY96804.1 photosystem I assembly protein Ycf4 [Cucumis melo var. momordica] >ASY96891.1 photosystem I assembly protein Ycf4 [Cucumis melo var. dudaim] >ASY96978.1 photosystem I assembly protein Ycf4 [Cucumis melo var. cantalupo] >ASY97152.1 photosystem I assembly protein Ycf4 [Cucumis melo var. inodorus] >ASY97326.1 photosystem I assembly protein Ycf4 [Cucumis melo var. flexuosus] >QJF46394.1 photosystem I assembly protein Ycf4 [Cucumis melo])

HSP 1 Score: 374.4 bits (960), Expect = 5.6e-100
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MNWRSERIWIEFIRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLIALFPSQQIIFF 60
           MNWRSERIWIEFIRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLIALFPSQQIIFF
Sbjct: 1   MNWRSERIWIEFIRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLIALFPSQQIIFF 60

Query: 61  PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF 120
           PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF
Sbjct: 61  PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF 120

Query: 121 LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP 180
           LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP
Sbjct: 121 LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP 180

Query: 181 IEVF 185
           IEVF
Sbjct: 181 IEVF 184

[Close]

BLAST of Pay0004755.1 vs. NCBI nr
Match: ASY96369.1 (photosystem I assembly protein Ycf4 [Cucumis melo subsp. agrestis])

HSP 1 Score: 373.6 bits (958), Expect = 9.6e-100
Identity = 183/184 (99.46%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MNWRSERIWIEFIRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLIALFPSQQIIFF 60
           MNWRSERIWIEF+RGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLIALFPSQQIIFF
Sbjct: 1   MNWRSERIWIEFLRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLIALFPSQQIIFF 60

Query: 61  PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF 120
           PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF
Sbjct: 61  PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF 120

Query: 121 LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP 180
           LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP
Sbjct: 121 LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP 180

Query: 181 IEVF 185
           IEVF
Sbjct: 181 IEVF 184

[Close]

BLAST of Pay0004755.1 vs. NCBI nr
Match: YP_009317397.1 (photosystem I assembly protein Ycf4 [Coccinia grandis] >YP_009326000.1 photosystem I assembly protein Ycf4 [Citrullus lanatus] >YP_009348042.1 photosystem I assembly protein Ycf4 [Citrullus mucosospermus] >YP_009420805.1 photosystem I assembly protein Ycf4 [Citrullus colocynthis] >YP_009431568.1 photosystem I assembly protein Ycf4 [Citrullus amarus] >YP_009431653.1 photosystem I assembly protein Ycf4 [Citrullus rehmii] >YP_009456157.1 photosystem I assembly protein Ycf4 [Lagenaria siceraria] >YP_010131105.1 photosystem I assembly protein Ycf4 [Benincasa hispida] >APW82472.1 photosystem I assembly protein Ycf4 [Citrullus lanatus subsp. vulgaris] >QNM38542.1 hypothetical protein [Lagenaria siceraria var. microcarpa] >QZL38604.1 photosystem I assembly factor Ycf4 [Citrullus naudinianus] >QZL38692.1 photosystem I assembly factor Ycf4 [Citrullus ecirrhosus] >AHM88707.1 photosystem I assembly protein ycf4 [Lagenaria siceraria])

HSP 1 Score: 373.2 bits (957), Expect = 1.3e-99
Identity = 183/184 (99.46%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MNWRSERIWIEFIRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLIALFPSQQIIFF 60
           MNWRSERIWIEFIRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLI+LFPSQQIIFF
Sbjct: 1   MNWRSERIWIEFIRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLISLFPSQQIIFF 60

Query: 61  PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF 120
           PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF
Sbjct: 61  PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF 120

Query: 121 LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP 180
           LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP
Sbjct: 121 LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP 180

Query: 181 IEVF 185
           IEVF
Sbjct: 181 IEVF 184

[Close]

BLAST of Pay0004755.1 vs. NCBI nr
Match: YP_009004055.1 (photosystem I assembly protein ycf4 [Cucumis hystrix] >YP_009346495.1 photosystem I assembly protein ycf4 [Cucumis x hytivus] >Q2QD78.1 RecName: Full=Photosystem I assembly protein Ycf4 [Cucumis sativus] >ALF03312.1 photosystem I assembly protein Ycf4 [Cucumis sativus var. hardwickii] >AVE15342.1 Ycf4 [Cucumis sativus var. sativus] >QHB75974.1 photosystem I assembly protein Ycf4 [Cucumis melo subsp. melo] >AAZ94662.1 ycf4 protein [Cucumis sativus] >ABI97428.1 photosystem I assembly protein ycf4 [Cucumis sativus])

HSP 1 Score: 372.5 bits (955), Expect = 2.1e-99
Identity = 182/184 (98.91%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MNWRSERIWIEFIRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLIALFPSQQIIFF 60
           MNWRSERIWIEF+RGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLI+LFPSQQIIFF
Sbjct: 1   MNWRSERIWIEFLRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLISLFPSQQIIFF 60

Query: 61  PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF 120
           PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF
Sbjct: 61  PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF 120

Query: 121 LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP 180
           LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP
Sbjct: 121 LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP 180

Query: 181 IEVF 185
           IEVF
Sbjct: 181 IEVF 184

[Close]

BLAST of Pay0004755.1 vs. NCBI nr
Match: AHM90238.1 (photosystem I assembly protein ycf4 [Lagenaria siceraria])

HSP 1 Score: 371.7 bits (953), Expect = 3.7e-99
Identity = 182/184 (98.91%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MNWRSERIWIEFIRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLIALFPSQQIIFF 60
           MNWRSERIWIEFIRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLI+LFPSQQIIFF
Sbjct: 1   MNWRSERIWIEFIRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLISLFPSQQIIFF 60

Query: 61  PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF 120
           PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF
Sbjct: 61  PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF 120

Query: 121 LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP 180
           LMKDIQSIRI+VKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP
Sbjct: 121 LMKDIQSIRIKVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP 180

Query: 181 IEVF 185
           IEVF
Sbjct: 181 IEVF 184

[Close]

BLAST of Pay0004755.1 vs. TAIR 10
Match: ATCG00520.1 (unfolded protein binding )

HSP 1 Score: 337.0 bits (863), Expect = 9.3e-93
Identity = 165/184 (89.67%), Postives = 172/184 (93.48%), Query Frame = 0


Query: 1   MNWRSERIWIEFIRGSRKISNFCWAFILFLGSLGFLLVGTSSYLGRDLIALFPSQQIIFF 60
           M+WRSE IWIEFI GSRK SNFCWAFILFLGSLGFLLVGTSSYLGR++I+LFPSQQIIFF
Sbjct: 1   MSWRSESIWIEFITGSRKTSNFCWAFILFLGSLGFLLVGTSSYLGRNVISLFPSQQIIFF 60

Query: 61  PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEEIVSIFRWGFPGKNRRIFLRF 120
           PQGIVMSFYGIAGLFIS YLWCTILWNVGSGYD FDRKE IV IFRWGFPGK+RRIFLRF
Sbjct: 61  PQGIVMSFYGIAGLFISCYLWCTILWNVGSGYDLFDRKEGIVRIFRWGFPGKSRRIFLRF 120

Query: 121 LMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVP 180
            MKDIQSIRIEVKEG+ ARRVLYMEIRGQGAIPL RTD+N T REIEQKAAELAYFLRVP
Sbjct: 121 FMKDIQSIRIEVKEGVSARRVLYMEIRGQGAIPLIRTDENFTTREIEQKAAELAYFLRVP 180

Query: 181 IEVF 185
           IEVF
Sbjct: 181 IEVF 184

The following BLAST results are available for this feature:

BLAST of Pay0004755.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QD78	2.8e-102	98.91	Photosystem I assembly protein Ycf4 OS=Cucumis sativus OX=3659 GN=ycf4 PE=3 SV=1	[more]
A0ZZ46	3.0e-96	92.93	Photosystem I assembly protein Ycf4 OS=Gossypium barbadense OX=3634 GN=ycf4 PE=3...	[more]
Q2L913	3.0e-96	92.93	Photosystem I assembly protein Ycf4 OS=Gossypium hirsutum OX=3635 GN=ycf4 PE=3 S...	[more]
Q09G35	3.0e-96	93.48	Photosystem I assembly protein Ycf4 OS=Platanus occidentalis OX=4403 GN=ycf4 PE=...	[more]
Q9GDV1	3.7e-94	90.76	Photosystem I assembly protein Ycf4 OS=Carpobrotus chilensis OX=142000 GN=ycf4 P...	[more]

BLAST of Pay0004755.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4EU22	2.7e-100	100.00	Photosystem I assembly protein Ycf4 OS=Cucumis melo OX=3656 GN=ycf4 PE=3 SV=1	[more]
A0A249S031	2.7e-100	100.00	Photosystem I assembly protein Ycf4 OS=Cucumis melo var. cantalupensis OX=3658 G...	[more]
A0A286NG24	2.7e-100	100.00	Photosystem I assembly protein Ycf4 OS=Cucumis melo var. flexuosus OX=1120798 GN...	[more]
A0A249RXT9	2.7e-100	100.00	Photosystem I assembly protein Ycf4 OS=Cucumis melo subsp. agrestis OX=217619 GN...	[more]
A0A249RZ43	2.7e-100	100.00	Photosystem I assembly protein Ycf4 OS=Cucumis melo var. dudaim OX=2034236 GN=yc...	[more]

BLAST of Pay0004755.1 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_004841794.1	5.6e-100	100.00	photosystem I assembly protein ycf4 [Cucumis melo subsp. melo] >YP_009860084.1 p...	[more]
ASY96369.1	9.6e-100	99.46	photosystem I assembly protein Ycf4 [Cucumis melo subsp. agrestis]	[more]
YP_009317397.1	1.3e-99	99.46	photosystem I assembly protein Ycf4 [Coccinia grandis] >YP_009326000.1 photosyst...	[more]
YP_009004055.1	2.1e-99	98.91	photosystem I assembly protein ycf4 [Cucumis hystrix] >YP_009346495.1 photosyste...	[more]
AHM90238.1	3.7e-99	98.91	photosystem I assembly protein ycf4 [Lagenaria siceraria]	[more]

BLAST of Pay0004755.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00520.1	9.3e-93	89.67	unfolded protein binding	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003359	Photosystem I Ycf4, assembly	PFAM	PF02392	Ycf4	coord: 7..182 e-value: 2.5E-79 score: 264.9
IPR003359	Photosystem I Ycf4, assembly	HAMAP	MF_00437	Ycf4	coord: 1..184 score: 39.008396
None	No IPR available	PANTHER	PTHR33288	FAMILY NOT NAMED	coord: 1..184
None	No IPR available	PANTHER	PTHR33288:SF4	PHOTOSYSTEM I ASSEMBLY PROTEIN YCF4	coord: 1..184

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Pay0004755	Pay0004755	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0004755.1-exon	Pay0004755.1-exon-Contig00288_ERROPOS136135:45439..45993	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0004755.1-cds	Pay0004755.1-cds-Contig00288_ERROPOS136135:45439..45993	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Pay0004755.1	Pay0004755.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0009535	chloroplast thylakoid membrane