PI0027076.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0027076.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr02: 19032927 .. 19033463 (+)
Sequence length	537
RNA-Seq Expression	PI0027076.1
Synteny	PI0027076.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAAGTCCAAAATGCACCACGTGGCAAGGACAGGGTGGCTACGCGAGAAGACGTCTGAACTACAAGCTCCTCGGCGAACAAGGCTACGCGGCAAGAGAAACGGCAGGCGAGAAGAATAAGGAAACAGAACGCGAGGAAAAGTCAAACCAAAACGCAAAGGAAAAACTTACCTCGCGAACCAAGCTTGCGAAGAAGGAAGAGGCGAGACTAACTCTCGGCAAGACAACCCAGCGAAACAACCAGCTCGCGAACAACGGCAGGCGGCGAGGGTGTTCGCGGACAACTTCTCAGCTTCGCGAGCTGTCCTTTGGCTCGCGAACCACTTCACCACGCGAACGACGGCGGAAGAGGATATTTCCGGACAACCTTAGTTCGCAGACTTCCTTAGCTCACTTCGCGACTAAACAACCTCGCGAACAGCACAGCTCCGCGGGAAAGGGGAACGCCCAAAACGCGAGTAACACAACCACCAACAGCTCAACTTCGCGGACAACTGAAACACGCGGCAAAGGACCTTACTTCACGGCAAGGTAA

mRNA sequence

ATGCTAAGTCCAAAATGCACCACGTGGCAAGGACAGGGTGGCTACGCGAGAAGACGTCTGAACTACAAGCTCCTCGGCGAACAAGGCTACGCGGCAAGAGAAACGGCAGGCGAGAAGAATAAGGAAACAGAACGCGAGGAAAAGTCAAACCAAAACGCAAAGGAAAAACTTACCTCGCGAACCAAGCTTGCGAAGAAGGAAGAGGCGAGACTAACTCTCGGCAAGACAACCCAGCGAAACAACCAGCTCGCGAACAACGGCAGGCGGCGAGGGTGTTCGCGGACAACTTCTCAGCTTCGCGAGCTGTCCTTTGGCTCGCGAACCACTTCACCACGCGAACGACGGCGGAAGAGGATATTTCCGGACAACCTTAGTTCGCAGACTTCCTTAGCTCACTTCGCGACTAAACAACCTCGCGAACAGCACAGCTCCGCGGGAAAGGGGAACGCCCAAAACGCGAGTAACACAACCACCAACAGCTCAACTTCGCGGACAACTGAAACACGCGGCAAAGGACCTTACTTCACGGCAAGGTAA

Coding sequence (CDS)

ATGCTAAGTCCAAAATGCACCACGTGGCAAGGACAGGGTGGCTACGCGAGAAGACGTCTGAACTACAAGCTCCTCGGCGAACAAGGCTACGCGGCAAGAGAAACGGCAGGCGAGAAGAATAAGGAAACAGAACGCGAGGAAAAGTCAAACCAAAACGCAAAGGAAAAACTTACCTCGCGAACCAAGCTTGCGAAGAAGGAAGAGGCGAGACTAACTCTCGGCAAGACAACCCAGCGAAACAACCAGCTCGCGAACAACGGCAGGCGGCGAGGGTGTTCGCGGACAACTTCTCAGCTTCGCGAGCTGTCCTTTGGCTCGCGAACCACTTCACCACGCGAACGACGGCGGAAGAGGATATTTCCGGACAACCTTAGTTCGCAGACTTCCTTAGCTCACTTCGCGACTAAACAACCTCGCGAACAGCACAGCTCCGCGGGAAAGGGGAACGCCCAAAACGCGAGTAACACAACCACCAACAGCTCAACTTCGCGGACAACTGAAACACGCGGCAAAGGACCTTACTTCACGGCAAGGTAA

Protein sequence

MLSPKCTTWQGQGGYARRRLNYKLLGEQGYAARETAGEKNKETEREEKSNQNAKEKLTSRTKLAKKEEARLTLGKTTQRNNQLANNGRRRGCSRTTSQLRELSFGSRTTSPRERRRKRIFPDNLSSQTSLAHFATKQPREQHSSAGKGNAQNASNTTTNSSTSRTTETRGKGPYFTAR

Homology

The following BLAST results are available for this feature:

BLAST of PI0027076.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0027076.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0027076.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0027076.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 36..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..170
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..178
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..73

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0027076	PI0027076	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0027076.1-exon	PI0027076.1-exon-chr02:19032927..19033463	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0027076.1-cds	PI0027076.1-cds-chr02:19032927..19033463	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0027076.1	PI0027076.1-protein	polypeptide