PI0026313.1 (mRNA) Melon (PI 482460) v1

Overview
NamePI0026313.1
TypemRNA
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr08: 16857391 .. 16857719 (+)
Sequence length243
RNA-Seq ExpressionPI0026313.1
SyntenyPI0026313.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCAAAACCATGGCAATGAAATGGATACTCCCTCAAGGTTTCATTGCAATCAGCAACGCAAAGCGAATAGGAGGAGATTCCAAGTAATGCATAAAGGGAAAGGGTAAAAAAGGTAGGATTACGCAGGTAATGGAAAGAGATCCATAGTGGTTGAGTTGATAAAAGAGGAAGTGAAGTTACGGGTATCAGAAAATGCAATTGGGTTGAGGAAGAAGAAGATCTGGAAGTTGGAACTGCAAGGGAGGTGGAGAAATCTGAAAAACTTGCTGAAATTAGGTCAATGGAAGCCATGGAAATTCCAAAGGAAGTCCTGATTTGGGGATGA

mRNA sequence

ATGAACCAAAACCATGGCAATGAAATGGATACTCCCTCAAGGTTTCATTGCAATCAGCAACGCAAAGCGAATAGGAGGAGATTCCAAGTAATGCATAAAGGGAAAGGAAAATGCAATTGGGTTGAGGAAGAAGAAGATCTGGAAGTTGGAACTGCAAGGGAGGTGGAGAAATCTGAAAAACTTGCTGAAATTAGGTCAATGGAAGCCATGGAAATTCCAAAGGAAGTCCTGATTTGGGGATGA

Coding sequence (CDS)

ATGAACCAAAACCATGGCAATGAAATGGATACTCCCTCAAGGTTTCATTGCAATCAGCAACGCAAAGCGAATAGGAGGAGATTCCAAGTAATGCATAAAGGGAAAGGAAAATGCAATTGGGTTGAGGAAGAAGAAGATCTGGAAGTTGGAACTGCAAGGGAGGTGGAGAAATCTGAAAAACTTGCTGAAATTAGGTCAATGGAAGCCATGGAAATTCCAAAGGAAGTCCTGATTTGGGGATGA

Protein sequence

MNQNHGNEMDTPSRFHCNQQRKANRRRFQVMHKGKGKCNWVEEEEDLEVGTAREVEKSEKLAEIRSMEAMEIPKEVLIWG
Homology
[Close]
BLAST of PI0026313.1 vs. ExPASy TrEMBL
Match: A0A0A0KH81 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G446350 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.9e-16
Identity = 52/80 (65.00%), Postives = 58/80 (72.50%), Query Frame = 0 

Query: 1  MNQNHGNEMDTPSRFHCNQQRKANRRRFQVMHKGKGKCNWVEEEEDLEVGTAREVEKSEK 60
          MN NHGNE DTP+RF     + A +RR     +    CNWVEEEED EVGTA +VEK E+
Sbjct: 1  MNPNHGNETDTPTRF---SSQSATQRR----GEDSENCNWVEEEEDTEVGTAMDVEKCER 60

Query: 61 LAEIRSMEAMEIPKEVLIWG 81
          L EIRSMEAMEIPKEVLIWG
Sbjct: 61 LTEIRSMEAMEIPKEVLIWG 73

[Close]
BLAST of PI0026313.1 vs. NCBI nr
Match: KGN48174.1 (hypothetical protein Csa_004128 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 1.4e-15
Identity = 52/80 (65.00%), Postives = 58/80 (72.50%), Query Frame = 0 

Query: 1  MNQNHGNEMDTPSRFHCNQQRKANRRRFQVMHKGKGKCNWVEEEEDLEVGTAREVEKSEK 60
          MN NHGNE DTP+RF     + A +RR     +    CNWVEEEED EVGTA +VEK E+
Sbjct: 1  MNPNHGNETDTPTRF---SSQSATQRR----GEDSENCNWVEEEEDTEVGTAMDVEKCER 60

Query: 61 LAEIRSMEAMEIPKEVLIWG 81
          L EIRSMEAMEIPKEVLIWG
Sbjct: 61 LTEIRSMEAMEIPKEVLIWG 73

The following BLAST results are available for this feature:
BLAST of PI0026313.1 vs.
Match NameE-valueIdentityDescription
BLAST of PI0026313.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KH816.9e-1665.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G446350 PE=4 SV=1[more]
BLAST of PI0026313.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48174.11.4e-1565.00hypothetical protein Csa_004128 [Cucumis sativus][more]
BLAST of PI0026313.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
PI0026313PI0026313gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
PI0026313.1-exonPI0026313.1-exon-chr08:16857391..16857497exon
PI0026313.1-exonPI0026313.1-exon-chr08:16857584..16857719exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
PI0026313.1-cdsPI0026313.1-cds-chr08:16857391..16857497CDS
PI0026313.1-cdsPI0026313.1-cds-chr08:16857584..16857719CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
PI0026313.1PI0026313.1-proteinpolypeptide