PI0026313 (gene) Melon (PI 482460) v1

Overview


Name	PI0026313
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr08: 16857391 .. 16857719 (+)
RNA-Seq Expression	PI0026313
Synteny	PI0026313

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCAAAACCATGGCAATGAAATGGATACTCCCTCAAGGTTTCATTGCAATCAGCAACGCAAAGCGAATAGGAGGAGATTCCAAGTAATGCATAAAGGGAAAGGGTAAAAAAGGTAGGATTACGCAGGTAATGGAAAGAGATCCATAGTGGTTGAGTTGATAAAAGAGGAAGTGAAGTTACGGGTATCAGAAAATGCAATTGGGTTGAGGAAGAAGAAGATCTGGAAGTTGGAACTGCAAGGGAGGTGGAGAAATCTGAAAAACTTGCTGAAATTAGGTCAATGGAAGCCATGGAAATTCCAAAGGAAGTCCTGATTTGGGGATGA

mRNA sequence

ATGAACCAAAACCATGGCAATGAAATGGATACTCCCTCAAGGTTTCATTGCAATCAGCAACGCAAAGCGAATAGGAGGAGATTCCAAGTAATGCATAAAGGGAAAGGAAAATGCAATTGGGTTGAGGAAGAAGAAGATCTGGAAGTTGGAACTGCAAGGGAGGTGGAGAAATCTGAAAAACTTGCTGAAATTAGGTCAATGGAAGCCATGGAAATTCCAAAGGAAGTCCTGATTTGGGGATGA

Coding sequence (CDS)

ATGAACCAAAACCATGGCAATGAAATGGATACTCCCTCAAGGTTTCATTGCAATCAGCAACGCAAAGCGAATAGGAGGAGATTCCAAGTAATGCATAAAGGGAAAGGAAAATGCAATTGGGTTGAGGAAGAAGAAGATCTGGAAGTTGGAACTGCAAGGGAGGTGGAGAAATCTGAAAAACTTGCTGAAATTAGGTCAATGGAAGCCATGGAAATTCCAAAGGAAGTCCTGATTTGGGGATGA

Protein sequence

MNQNHGNEMDTPSRFHCNQQRKANRRRFQVMHKGKGKCNWVEEEEDLEVGTAREVEKSEKLAEIRSMEAMEIPKEVLIWG

Homology

[Close]

BLAST of PI0026313 vs. ExPASy TrEMBL
Match: A0A0A0KH81 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G446350 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.9e-16
Identity = 52/80 (65.00%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 1  MNQNHGNEMDTPSRFHCNQQRKANRRRFQVMHKGKGKCNWVEEEEDLEVGTAREVEKSEK 60
          MN NHGNE DTP+RF     + A +RR     +    CNWVEEEED EVGTA +VEK E+
Sbjct: 1  MNPNHGNETDTPTRF---SSQSATQRR----GEDSENCNWVEEEEDTEVGTAMDVEKCER 60

Query: 61 LAEIRSMEAMEIPKEVLIWG 81
          L EIRSMEAMEIPKEVLIWG
Sbjct: 61 LTEIRSMEAMEIPKEVLIWG 73

[Close]

BLAST of PI0026313 vs. NCBI nr
Match: KGN48174.1 (hypothetical protein Csa_004128 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 1.4e-15
Identity = 52/80 (65.00%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 1  MNQNHGNEMDTPSRFHCNQQRKANRRRFQVMHKGKGKCNWVEEEEDLEVGTAREVEKSEK 60
          MN NHGNE DTP+RF     + A +RR     +    CNWVEEEED EVGTA +VEK E+
Sbjct: 1  MNPNHGNETDTPTRF---SSQSATQRR----GEDSENCNWVEEEEDTEVGTAMDVEKCER 60

Query: 61 LAEIRSMEAMEIPKEVLIWG 81
          L EIRSMEAMEIPKEVLIWG
Sbjct: 61 LTEIRSMEAMEIPKEVLIWG 73

The following BLAST results are available for this feature:

BLAST of PI0026313 vs.


Match Name	E-value	Identity	Description

BLAST of PI0026313 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KH81	6.9e-16	65.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G446350 PE=4 SV=1	[more]

BLAST of PI0026313 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48174.1	1.4e-15	65.00	hypothetical protein Csa_004128 [Cucumis sativus]	[more]

BLAST of PI0026313 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0026313.1	PI0026313.1	mRNA