Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATCATTGCGGAGAAAGACTTATACGACAATTGGGTGAAGGTATGTTATTGATTCTATCCATTACTGTTCGTATGTAATAGTAAATTGACTAATTAGTTCCTGTAACATTTGTACTGAGTCATCCAGCCGCAAAGGGCCTCCTAAACAAACCCTTTCCCCATTACGACGACCTATGCTACATCTTTGGAAGAGATCGTGCAACAGGAGGTCGCGGTGAAACCTTTGCCGATGTTGGGTCGAACGTGCCTGCAGGATACGATGGATTTCCCGCTTATGATGGGAACGATATGGAGTTCCCGACGATGTACAGTCAGGGGCTGGACATGTCACCTAACGACATAATGGGTACACGACCTGGTCGGTTGTCTGAGGGTAGGGCTGGTTCGAGTGGTTTAAAAAGGAAACAGGGAGGGCAGGCGTTCGAGACGGCAGAAATTATTCGCAGTGCCATGGAATATGCGAATGACCAGCTAAAGGCCATTGCAGAATGGCCTAAAGAACAACGCCAAGATGCAAGCGTGACACATGCGGAAGTTGTTAGACAACTATAG
mRNA sequence
ATGCATCATTGCGGAGAAAGACTTATACGACAATTGGGTGAAGTTCCTGTAACATTTGTACTGAGTCATCCAGCCGCAAAGGGCCTCCTAAACAAACCCTTTCCCCATTACGACGACCTATGCTACATCTTTGGAAGAGATCGTGCAACAGGAGGTCGCGGTGAAACCTTTGCCGATGTTGGGTCGAACGTGCCTGCAGGATACGATGGATTTCCCGCTTATGATGGGAACGATATGGAGTTCCCGACGATGTACAGTCAGGGGCTGGACATGTCACCTAACGACATAATGGGTACACGACCTGGTCGGTTGTCTGAGGGTAGGGCTGGTTCGAGTGGTTTAAAAAGGAAACAGGGAGGGCAGGCGTTCGAGACGGCAGAAATTATTCGCAGTGCCATGGAATATGCGAATGACCAGCTAAAGGCCATTGCAGAATGGCCTAAAGAACAACGCCAAGATGCAAGCGTGACACATGCGGAAGTTGTTAGACAACTATAG
Coding sequence (CDS)
ATGCATCATTGCGGAGAAAGACTTATACGACAATTGGGTGAAGTTCCTGTAACATTTGTACTGAGTCATCCAGCCGCAAAGGGCCTCCTAAACAAACCCTTTCCCCATTACGACGACCTATGCTACATCTTTGGAAGAGATCGTGCAACAGGAGGTCGCGGTGAAACCTTTGCCGATGTTGGGTCGAACGTGCCTGCAGGATACGATGGATTTCCCGCTTATGATGGGAACGATATGGAGTTCCCGACGATGTACAGTCAGGGGCTGGACATGTCACCTAACGACATAATGGGTACACGACCTGGTCGGTTGTCTGAGGGTAGGGCTGGTTCGAGTGGTTTAAAAAGGAAACAGGGAGGGCAGGCGTTCGAGACGGCAGAAATTATTCGCAGTGCCATGGAATATGCGAATGACCAGCTAAAGGCCATTGCAGAATGGCCTAAAGAACAACGCCAAGATGCAAGCGTGACACATGCGGAAGTTGTTAGACAACTATAG
Protein sequence
MHHCGERLIRQLGEVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPAYDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSGLKRKQGGQAFETAEIIRSAMEYANDQLKAIAEWPKEQRQDASVTHAEVVRQL
Homology
BLAST of PI0025280.1 vs. ExPASy TrEMBL
Match:
A0A5A7TYQ6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G002060 PE=4 SV=1)
HSP 1 Score: 189.1 bits (479), Expect = 1.5e-44
Identity = 95/152 (62.50%), Postives = 116/152 (76.32%), Query Frame = 0
Query: 14 EVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPA 73
EV +V SHPAAKGLLNK F HYD+L Y+FG+DRATGGR E+FAD+GSN PAGYD F A
Sbjct: 74 EVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGYDAFAA 133
Query: 74 YDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSGLKRKQGGQAFETAEIIRSAM 133
D +D +F MYS GL+MSP+D+M TR R+SE R SSG KRK+ G A ++ +I+R+AM
Sbjct: 134 DDVSDTDFLPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRSGHATDSGDIVRTAM 193
Query: 134 EYANDQLKAIAEWPKEQRQDASVTHAEVVRQL 166
EY N+QL IAEWP QRQDA+ T E+VRQL
Sbjct: 194 EYGNEQLHRIAEWPILQRQDATETRQEIVRQL 225
BLAST of PI0025280.1 vs. ExPASy TrEMBL
Match:
A0A5D3BC43 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001510 PE=4 SV=1)
HSP 1 Score: 188.0 bits (476), Expect = 3.2e-44
Identity = 94/152 (61.84%), Postives = 116/152 (76.32%), Query Frame = 0
Query: 14 EVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPA 73
EV +V SHPAAKGLLNK F HYD+L Y+FG+DR+TGGR E+FAD+GSN PAGYD F A
Sbjct: 73 EVFDNWVKSHPAAKGLLNKLFVHYDELSYVFGKDRSTGGRVESFADIGSNDPAGYDAFAA 132
Query: 74 YDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSGLKRKQGGQAFETAEIIRSAM 133
D +FP+MYSQGL+MSP+D+MGTR R+SE R SS KRK+ G A ++ I+R+A+
Sbjct: 133 DAAPDTDFPSMYSQGLNMSPDDLMGTRIARVSERRNVSSRSKRKRPGHAIDSGNIVRTAI 192
Query: 134 EYANDQLKAIAEWPKEQRQDASVTHAEVVRQL 166
EY N+QL IAEWP QRQDAS T E++RQL
Sbjct: 193 EYENEQLNHIAEWPVLQRQDASQTRQEIIRQL 224
BLAST of PI0025280.1 vs. ExPASy TrEMBL
Match:
A0A5A7TZA5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1871G00090 PE=4 SV=1)
HSP 1 Score: 187.6 bits (475), Expect = 4.2e-44
Identity = 92/152 (60.53%), Postives = 115/152 (75.66%), Query Frame = 0
Query: 14 EVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPA 73
EV +V SHPAAKGLLNK FPHYD+L Y+F +D ATGGR E+FADVGSN P GYD F A
Sbjct: 76 EVFDDWVRSHPAAKGLLNKSFPHYDELSYVFSKDHATGGRAESFADVGSNDPTGYDAFAA 135
Query: 74 YDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSGLKRKQGGQAFETAEIIRSAM 133
+D +F MYS+GL+MSP+++MGTR R+SEGR SSG K+K+GG ++ +I+R+A+
Sbjct: 136 NAASDTDFQPMYSRGLNMSPDELMGTRTARVSEGRYVSSGSKQKRGGSTIDSGDILRTAI 195
Query: 134 EYANDQLKAIAEWPKEQRQDASVTHAEVVRQL 166
EY N+QL IAEW QRQDA+ T EVVRQL
Sbjct: 196 EYGNEQLNRIAEWHVLQRQDATQTRQEVVRQL 227
BLAST of PI0025280.1 vs. ExPASy TrEMBL
Match:
A0A5A7U7R0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00810 PE=4 SV=1)
HSP 1 Score: 184.5 bits (467), Expect = 3.6e-43
Identity = 91/147 (61.90%), Postives = 111/147 (75.51%), Query Frame = 0
Query: 19 FVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPAYDGND 78
+V SHPAAKGLLNK F HYD+L Y+FG+DRATGGR E FAD+G N PA YD F A D
Sbjct: 16 WVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRTECFADIGLNNPAEYDAFAADAATD 75
Query: 79 MEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSGLKRKQGGQAFETAEIIRSAMEYAND 138
+FP MYSQGL+MSP+D+MGTR R+SE R SG KRK+ G A ++ +I+R+A+EY N+
Sbjct: 76 TDFPPMYSQGLNMSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAIEYGNE 135
Query: 139 QLKAIAEWPKEQRQDASVTHAEVVRQL 166
Q+ IAEWP QRQDAS T E+VRQL
Sbjct: 136 QVNRIAEWPVLQRQDASQTRQEIVRQL 162
BLAST of PI0025280.1 vs. ExPASy TrEMBL
Match:
A0A5A7U4M2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold404G00330 PE=4 SV=1)
HSP 1 Score: 183.3 bits (464), Expect = 8.0e-43
Identity = 93/152 (61.18%), Postives = 114/152 (75.00%), Query Frame = 0
Query: 14 EVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPA 73
EV +V SHPAAKGLLNK F HYD+L Y+FG+DRATGGR E+FAD+GSN PAGYD F A
Sbjct: 55 EVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGYDAFAA 114
Query: 74 YDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSGLKRKQGGQAFETAEIIRSAM 133
D +FP MYS GL+MSP+D+M TR R+SE R SSG K K+ G A ++ +I+R+A+
Sbjct: 115 DTVLDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKWKRPGHATDSGDIVRTAI 174
Query: 134 EYANDQLKAIAEWPKEQRQDASVTHAEVVRQL 166
EY N+QL IAEWP QRQDA+ T E+VRQL
Sbjct: 175 EYGNEQLHRIAEWPILQRQDATQTRQEIVRQL 206
BLAST of PI0025280.1 vs. NCBI nr
Match:
KAA0048280.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 189.1 bits (479), Expect = 3.0e-44
Identity = 95/152 (62.50%), Postives = 116/152 (76.32%), Query Frame = 0
Query: 14 EVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPA 73
EV +V SHPAAKGLLNK F HYD+L Y+FG+DRATGGR E+FAD+GSN PAGYD F A
Sbjct: 74 EVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGYDAFAA 133
Query: 74 YDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSGLKRKQGGQAFETAEIIRSAM 133
D +D +F MYS GL+MSP+D+M TR R+SE R SSG KRK+ G A ++ +I+R+AM
Sbjct: 134 DDVSDTDFLPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRSGHATDSGDIVRTAM 193
Query: 134 EYANDQLKAIAEWPKEQRQDASVTHAEVVRQL 166
EY N+QL IAEWP QRQDA+ T E+VRQL
Sbjct: 194 EYGNEQLHRIAEWPILQRQDATETRQEIVRQL 225
BLAST of PI0025280.1 vs. NCBI nr
Match:
KAA0036791.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ95858.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 188.0 bits (476), Expect = 6.7e-44
Identity = 94/152 (61.84%), Postives = 116/152 (76.32%), Query Frame = 0
Query: 14 EVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPA 73
EV +V SHPAAKGLLNK F HYD+L Y+FG+DR+TGGR E+FAD+GSN PAGYD F A
Sbjct: 73 EVFDNWVKSHPAAKGLLNKLFVHYDELSYVFGKDRSTGGRVESFADIGSNDPAGYDAFAA 132
Query: 74 YDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSGLKRKQGGQAFETAEIIRSAM 133
D +FP+MYSQGL+MSP+D+MGTR R+SE R SS KRK+ G A ++ I+R+A+
Sbjct: 133 DAAPDTDFPSMYSQGLNMSPDDLMGTRIARVSERRNVSSRSKRKRPGHAIDSGNIVRTAI 192
Query: 134 EYANDQLKAIAEWPKEQRQDASVTHAEVVRQL 166
EY N+QL IAEWP QRQDAS T E++RQL
Sbjct: 193 EYENEQLNHIAEWPVLQRQDASQTRQEIIRQL 224
BLAST of PI0025280.1 vs. NCBI nr
Match:
KAA0048374.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 187.6 bits (475), Expect = 8.8e-44
Identity = 92/152 (60.53%), Postives = 115/152 (75.66%), Query Frame = 0
Query: 14 EVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPA 73
EV +V SHPAAKGLLNK FPHYD+L Y+F +D ATGGR E+FADVGSN P GYD F A
Sbjct: 76 EVFDDWVRSHPAAKGLLNKSFPHYDELSYVFSKDHATGGRAESFADVGSNDPTGYDAFAA 135
Query: 74 YDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSGLKRKQGGQAFETAEIIRSAM 133
+D +F MYS+GL+MSP+++MGTR R+SEGR SSG K+K+GG ++ +I+R+A+
Sbjct: 136 NAASDTDFQPMYSRGLNMSPDELMGTRTARVSEGRYVSSGSKQKRGGSTIDSGDILRTAI 195
Query: 134 EYANDQLKAIAEWPKEQRQDASVTHAEVVRQL 166
EY N+QL IAEW QRQDA+ T EVVRQL
Sbjct: 196 EYGNEQLNRIAEWHVLQRQDATQTRQEVVRQL 227
BLAST of PI0025280.1 vs. NCBI nr
Match:
KAA0050216.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ98192.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 184.5 bits (467), Expect = 7.4e-43
Identity = 91/147 (61.90%), Postives = 111/147 (75.51%), Query Frame = 0
Query: 19 FVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPAYDGND 78
+V SHPAAKGLLNK F HYD+L Y+FG+DRATGGR E FAD+G N PA YD F A D
Sbjct: 16 WVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRTECFADIGLNNPAEYDAFAADAATD 75
Query: 79 MEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSGLKRKQGGQAFETAEIIRSAMEYAND 138
+FP MYSQGL+MSP+D+MGTR R+SE R SG KRK+ G A ++ +I+R+A+EY N+
Sbjct: 76 TDFPPMYSQGLNMSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAIEYGNE 135
Query: 139 QLKAIAEWPKEQRQDASVTHAEVVRQL 166
Q+ IAEWP QRQDAS T E+VRQL
Sbjct: 136 QVNRIAEWPVLQRQDASQTRQEIVRQL 162
BLAST of PI0025280.1 vs. NCBI nr
Match:
KAA0050782.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 183.3 bits (464), Expect = 1.7e-42
Identity = 93/152 (61.18%), Postives = 114/152 (75.00%), Query Frame = 0
Query: 14 EVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPA 73
EV +V SHPAAKGLLNK F HYD+L Y+FG+DRATGGR E+FAD+GSN PAGYD F A
Sbjct: 55 EVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGYDAFAA 114
Query: 74 YDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSGLKRKQGGQAFETAEIIRSAM 133
D +FP MYS GL+MSP+D+M TR R+SE R SSG K K+ G A ++ +I+R+A+
Sbjct: 115 DTVLDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKWKRPGHATDSGDIVRTAI 174
Query: 134 EYANDQLKAIAEWPKEQRQDASVTHAEVVRQL 166
EY N+QL IAEWP QRQDA+ T E+VRQL
Sbjct: 175 EYGNEQLHRIAEWPILQRQDATQTRQEIVRQL 206
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7TYQ6 | 1.5e-44 | 62.50 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3BC43 | 3.2e-44 | 61.84 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7TZA5 | 4.2e-44 | 60.53 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7U7R0 | 3.6e-43 | 61.90 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7U4M2 | 8.0e-43 | 61.18 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
KAA0048280.1 | 3.0e-44 | 62.50 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0036791.1 | 6.7e-44 | 61.84 | retrotransposon protein [Cucumis melo var. makuwa] >TYJ95858.1 retrotransposon p... | [more] |
KAA0048374.1 | 8.8e-44 | 60.53 | retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon p... | [more] |
KAA0050216.1 | 7.4e-43 | 61.90 | retrotransposon protein [Cucumis melo var. makuwa] >TYJ98192.1 retrotransposon p... | [more] |
KAA0050782.1 | 1.7e-42 | 61.18 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |