PI0025280 (gene) Melon (PI 482460) v1

Overview
NamePI0025280
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Locationchr02: 17360144 .. 17360698 (+)
RNA-Seq ExpressionPI0025280
SyntenyPI0025280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATCATTGCGGAGAAAGACTTATACGACAATTGGGTGAAGGTATGTTATTGATTCTATCCATTACTGTTCGTATGTAATAGTAAATTGACTAATTAGTTCCTGTAACATTTGTACTGAGTCATCCAGCCGCAAAGGGCCTCCTAAACAAACCCTTTCCCCATTACGACGACCTATGCTACATCTTTGGAAGAGATCGTGCAACAGGAGGTCGCGGTGAAACCTTTGCCGATGTTGGGTCGAACGTGCCTGCAGGATACGATGGATTTCCCGCTTATGATGGGAACGATATGGAGTTCCCGACGATGTACAGTCAGGGGCTGGACATGTCACCTAACGACATAATGGGTACACGACCTGGTCGGTTGTCTGAGGGTAGGGCTGGTTCGAGTGGTTTAAAAAGGAAACAGGGAGGGCAGGCGTTCGAGACGGCAGAAATTATTCGCAGTGCCATGGAATATGCGAATGACCAGCTAAAGGCCATTGCAGAATGGCCTAAAGAACAACGCCAAGATGCAAGCGTGACACATGCGGAAGTTGTTAGACAACTATAG

mRNA sequence

ATGCATCATTGCGGAGAAAGACTTATACGACAATTGGGTGAAGTTCCTGTAACATTTGTACTGAGTCATCCAGCCGCAAAGGGCCTCCTAAACAAACCCTTTCCCCATTACGACGACCTATGCTACATCTTTGGAAGAGATCGTGCAACAGGAGGTCGCGGTGAAACCTTTGCCGATGTTGGGTCGAACGTGCCTGCAGGATACGATGGATTTCCCGCTTATGATGGGAACGATATGGAGTTCCCGACGATGTACAGTCAGGGGCTGGACATGTCACCTAACGACATAATGGGTACACGACCTGGTCGGTTGTCTGAGGGTAGGGCTGGTTCGAGTGGTTTAAAAAGGAAACAGGGAGGGCAGGCGTTCGAGACGGCAGAAATTATTCGCAGTGCCATGGAATATGCGAATGACCAGCTAAAGGCCATTGCAGAATGGCCTAAAGAACAACGCCAAGATGCAAGCGTGACACATGCGGAAGTTGTTAGACAACTATAG

Coding sequence (CDS)

ATGCATCATTGCGGAGAAAGACTTATACGACAATTGGGTGAAGTTCCTGTAACATTTGTACTGAGTCATCCAGCCGCAAAGGGCCTCCTAAACAAACCCTTTCCCCATTACGACGACCTATGCTACATCTTTGGAAGAGATCGTGCAACAGGAGGTCGCGGTGAAACCTTTGCCGATGTTGGGTCGAACGTGCCTGCAGGATACGATGGATTTCCCGCTTATGATGGGAACGATATGGAGTTCCCGACGATGTACAGTCAGGGGCTGGACATGTCACCTAACGACATAATGGGTACACGACCTGGTCGGTTGTCTGAGGGTAGGGCTGGTTCGAGTGGTTTAAAAAGGAAACAGGGAGGGCAGGCGTTCGAGACGGCAGAAATTATTCGCAGTGCCATGGAATATGCGAATGACCAGCTAAAGGCCATTGCAGAATGGCCTAAAGAACAACGCCAAGATGCAAGCGTGACACATGCGGAAGTTGTTAGACAACTATAG

Protein sequence

MHHCGERLIRQLGEVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPAYDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSGLKRKQGGQAFETAEIIRSAMEYANDQLKAIAEWPKEQRQDASVTHAEVVRQL
Homology
BLAST of PI0025280 vs. ExPASy TrEMBL
Match: A0A5A7TYQ6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G002060 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.5e-44
Identity = 95/152 (62.50%), Postives = 116/152 (76.32%), Query Frame = 0

Query: 14  EVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPA 73
           EV   +V SHPAAKGLLNK F HYD+L Y+FG+DRATGGR E+FAD+GSN PAGYD F A
Sbjct: 74  EVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGYDAFAA 133

Query: 74  YDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSGLKRKQGGQAFETAEIIRSAM 133
            D +D +F  MYS GL+MSP+D+M TR  R+SE R  SSG KRK+ G A ++ +I+R+AM
Sbjct: 134 DDVSDTDFLPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRSGHATDSGDIVRTAM 193

Query: 134 EYANDQLKAIAEWPKEQRQDASVTHAEVVRQL 166
           EY N+QL  IAEWP  QRQDA+ T  E+VRQL
Sbjct: 194 EYGNEQLHRIAEWPILQRQDATETRQEIVRQL 225

BLAST of PI0025280 vs. ExPASy TrEMBL
Match: A0A5D3BC43 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001510 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 3.2e-44
Identity = 94/152 (61.84%), Postives = 116/152 (76.32%), Query Frame = 0

Query: 14  EVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPA 73
           EV   +V SHPAAKGLLNK F HYD+L Y+FG+DR+TGGR E+FAD+GSN PAGYD F A
Sbjct: 73  EVFDNWVKSHPAAKGLLNKLFVHYDELSYVFGKDRSTGGRVESFADIGSNDPAGYDAFAA 132

Query: 74  YDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSGLKRKQGGQAFETAEIIRSAM 133
               D +FP+MYSQGL+MSP+D+MGTR  R+SE R  SS  KRK+ G A ++  I+R+A+
Sbjct: 133 DAAPDTDFPSMYSQGLNMSPDDLMGTRIARVSERRNVSSRSKRKRPGHAIDSGNIVRTAI 192

Query: 134 EYANDQLKAIAEWPKEQRQDASVTHAEVVRQL 166
           EY N+QL  IAEWP  QRQDAS T  E++RQL
Sbjct: 193 EYENEQLNHIAEWPVLQRQDASQTRQEIIRQL 224

BLAST of PI0025280 vs. ExPASy TrEMBL
Match: A0A5A7TZA5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1871G00090 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 4.2e-44
Identity = 92/152 (60.53%), Postives = 115/152 (75.66%), Query Frame = 0

Query: 14  EVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPA 73
           EV   +V SHPAAKGLLNK FPHYD+L Y+F +D ATGGR E+FADVGSN P GYD F A
Sbjct: 76  EVFDDWVRSHPAAKGLLNKSFPHYDELSYVFSKDHATGGRAESFADVGSNDPTGYDAFAA 135

Query: 74  YDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSGLKRKQGGQAFETAEIIRSAM 133
              +D +F  MYS+GL+MSP+++MGTR  R+SEGR  SSG K+K+GG   ++ +I+R+A+
Sbjct: 136 NAASDTDFQPMYSRGLNMSPDELMGTRTARVSEGRYVSSGSKQKRGGSTIDSGDILRTAI 195

Query: 134 EYANDQLKAIAEWPKEQRQDASVTHAEVVRQL 166
           EY N+QL  IAEW   QRQDA+ T  EVVRQL
Sbjct: 196 EYGNEQLNRIAEWHVLQRQDATQTRQEVVRQL 227

BLAST of PI0025280 vs. ExPASy TrEMBL
Match: A0A5A7U7R0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00810 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 3.6e-43
Identity = 91/147 (61.90%), Postives = 111/147 (75.51%), Query Frame = 0

Query: 19  FVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPAYDGND 78
           +V SHPAAKGLLNK F HYD+L Y+FG+DRATGGR E FAD+G N PA YD F A    D
Sbjct: 16  WVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRTECFADIGLNNPAEYDAFAADAATD 75

Query: 79  MEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSGLKRKQGGQAFETAEIIRSAMEYAND 138
            +FP MYSQGL+MSP+D+MGTR  R+SE R   SG KRK+ G A ++ +I+R+A+EY N+
Sbjct: 76  TDFPPMYSQGLNMSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAIEYGNE 135

Query: 139 QLKAIAEWPKEQRQDASVTHAEVVRQL 166
           Q+  IAEWP  QRQDAS T  E+VRQL
Sbjct: 136 QVNRIAEWPVLQRQDASQTRQEIVRQL 162

BLAST of PI0025280 vs. ExPASy TrEMBL
Match: A0A5A7U4M2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold404G00330 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 8.0e-43
Identity = 93/152 (61.18%), Postives = 114/152 (75.00%), Query Frame = 0

Query: 14  EVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPA 73
           EV   +V SHPAAKGLLNK F HYD+L Y+FG+DRATGGR E+FAD+GSN PAGYD F A
Sbjct: 55  EVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGYDAFAA 114

Query: 74  YDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSGLKRKQGGQAFETAEIIRSAM 133
               D +FP MYS GL+MSP+D+M TR  R+SE R  SSG K K+ G A ++ +I+R+A+
Sbjct: 115 DTVLDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKWKRPGHATDSGDIVRTAI 174

Query: 134 EYANDQLKAIAEWPKEQRQDASVTHAEVVRQL 166
           EY N+QL  IAEWP  QRQDA+ T  E+VRQL
Sbjct: 175 EYGNEQLHRIAEWPILQRQDATQTRQEIVRQL 206

BLAST of PI0025280 vs. NCBI nr
Match: KAA0048280.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 189.1 bits (479), Expect = 3.0e-44
Identity = 95/152 (62.50%), Postives = 116/152 (76.32%), Query Frame = 0

Query: 14  EVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPA 73
           EV   +V SHPAAKGLLNK F HYD+L Y+FG+DRATGGR E+FAD+GSN PAGYD F A
Sbjct: 74  EVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGYDAFAA 133

Query: 74  YDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSGLKRKQGGQAFETAEIIRSAM 133
            D +D +F  MYS GL+MSP+D+M TR  R+SE R  SSG KRK+ G A ++ +I+R+AM
Sbjct: 134 DDVSDTDFLPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRSGHATDSGDIVRTAM 193

Query: 134 EYANDQLKAIAEWPKEQRQDASVTHAEVVRQL 166
           EY N+QL  IAEWP  QRQDA+ T  E+VRQL
Sbjct: 194 EYGNEQLHRIAEWPILQRQDATETRQEIVRQL 225

BLAST of PI0025280 vs. NCBI nr
Match: KAA0036791.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ95858.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 188.0 bits (476), Expect = 6.7e-44
Identity = 94/152 (61.84%), Postives = 116/152 (76.32%), Query Frame = 0

Query: 14  EVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPA 73
           EV   +V SHPAAKGLLNK F HYD+L Y+FG+DR+TGGR E+FAD+GSN PAGYD F A
Sbjct: 73  EVFDNWVKSHPAAKGLLNKLFVHYDELSYVFGKDRSTGGRVESFADIGSNDPAGYDAFAA 132

Query: 74  YDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSGLKRKQGGQAFETAEIIRSAM 133
               D +FP+MYSQGL+MSP+D+MGTR  R+SE R  SS  KRK+ G A ++  I+R+A+
Sbjct: 133 DAAPDTDFPSMYSQGLNMSPDDLMGTRIARVSERRNVSSRSKRKRPGHAIDSGNIVRTAI 192

Query: 134 EYANDQLKAIAEWPKEQRQDASVTHAEVVRQL 166
           EY N+QL  IAEWP  QRQDAS T  E++RQL
Sbjct: 193 EYENEQLNHIAEWPVLQRQDASQTRQEIIRQL 224

BLAST of PI0025280 vs. NCBI nr
Match: KAA0048374.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 187.6 bits (475), Expect = 8.8e-44
Identity = 92/152 (60.53%), Postives = 115/152 (75.66%), Query Frame = 0

Query: 14  EVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPA 73
           EV   +V SHPAAKGLLNK FPHYD+L Y+F +D ATGGR E+FADVGSN P GYD F A
Sbjct: 76  EVFDDWVRSHPAAKGLLNKSFPHYDELSYVFSKDHATGGRAESFADVGSNDPTGYDAFAA 135

Query: 74  YDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSGLKRKQGGQAFETAEIIRSAM 133
              +D +F  MYS+GL+MSP+++MGTR  R+SEGR  SSG K+K+GG   ++ +I+R+A+
Sbjct: 136 NAASDTDFQPMYSRGLNMSPDELMGTRTARVSEGRYVSSGSKQKRGGSTIDSGDILRTAI 195

Query: 134 EYANDQLKAIAEWPKEQRQDASVTHAEVVRQL 166
           EY N+QL  IAEW   QRQDA+ T  EVVRQL
Sbjct: 196 EYGNEQLNRIAEWHVLQRQDATQTRQEVVRQL 227

BLAST of PI0025280 vs. NCBI nr
Match: KAA0050216.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ98192.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 184.5 bits (467), Expect = 7.4e-43
Identity = 91/147 (61.90%), Postives = 111/147 (75.51%), Query Frame = 0

Query: 19  FVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPAYDGND 78
           +V SHPAAKGLLNK F HYD+L Y+FG+DRATGGR E FAD+G N PA YD F A    D
Sbjct: 16  WVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRTECFADIGLNNPAEYDAFAADAATD 75

Query: 79  MEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSGLKRKQGGQAFETAEIIRSAMEYAND 138
            +FP MYSQGL+MSP+D+MGTR  R+SE R   SG KRK+ G A ++ +I+R+A+EY N+
Sbjct: 76  TDFPPMYSQGLNMSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAIEYGNE 135

Query: 139 QLKAIAEWPKEQRQDASVTHAEVVRQL 166
           Q+  IAEWP  QRQDAS T  E+VRQL
Sbjct: 136 QVNRIAEWPVLQRQDASQTRQEIVRQL 162

BLAST of PI0025280 vs. NCBI nr
Match: KAA0050782.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 183.3 bits (464), Expect = 1.7e-42
Identity = 93/152 (61.18%), Postives = 114/152 (75.00%), Query Frame = 0

Query: 14  EVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPA 73
           EV   +V SHPAAKGLLNK F HYD+L Y+FG+DRATGGR E+FAD+GSN PAGYD F A
Sbjct: 55  EVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGYDAFAA 114

Query: 74  YDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSGLKRKQGGQAFETAEIIRSAM 133
               D +FP MYS GL+MSP+D+M TR  R+SE R  SSG K K+ G A ++ +I+R+A+
Sbjct: 115 DTVLDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKWKRPGHATDSGDIVRTAI 174

Query: 134 EYANDQLKAIAEWPKEQRQDASVTHAEVVRQL 166
           EY N+QL  IAEWP  QRQDA+ T  E+VRQL
Sbjct: 175 EYGNEQLHRIAEWPILQRQDATQTRQEIVRQL 206

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TYQ61.5e-4462.50Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BC433.2e-4461.84Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TZA54.2e-4460.53Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U7R03.6e-4361.90Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U4M28.0e-4361.18Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0048280.13.0e-4462.50retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0036791.16.7e-4461.84retrotransposon protein [Cucumis melo var. makuwa] >TYJ95858.1 retrotransposon p... [more]
KAA0048374.18.8e-4460.53retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon p... [more]
KAA0050216.17.4e-4361.90retrotransposon protein [Cucumis melo var. makuwa] >TYJ98192.1 retrotransposon p... [more]
KAA0050782.11.7e-4261.18retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 19..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0025280.1PI0025280.1mRNA