PI0007033.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0007033.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	PMD domain-containing protein
Location	chr10: 7467 .. 8040 (+)
Sequence length	396
RNA-Seq Expression	PI0007033.1
Synteny	PI0007033.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTCGTACTGGAAATCAGAATCAAACGAGCTTTTACCCTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCATCTTAGGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATTGGCCCGCCGAAGCAAGCCTTATGTCCAAAAAGAGGGGCAGTGCCCCGCTTCCGTTTCACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCTTTCGGCTCCCACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAA

mRNA sequence

ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATTGGCCCGCCGAAGCAAGCCTTATGTCCAAAAAGAGGGGCAGTGCCCCGCTTCCGTTTCACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCTTTCGGCTCCCACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAA

Coding sequence (CDS)

ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATTGGCCCGCCGAAGCAAGCCTTATGTCCAAAAAGAGGGGCAGTGCCCCGCTTCCGTTTCACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCTTTCGGCTCCCACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAA

Protein sequence

MIGRADIEGSKSNVAMNAWLPQASYPCDVPPQPNSPPDNVFRPDWPAEASLMSKKRGSAPLPFHGISKITLKVVVFHFRLSAPTYPTPLKSFHKVGLESSSTGSSFPADSAKPVPLAVVSLDSRQGQWESR

Homology

[Close]

BLAST of PI0007033.1 vs. ExPASy TrEMBL
Match: A0A5A7UI06 (Putative senescence-associated protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1121G00100 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.2e-59
Identity = 130/191 (68.06%), Postives = 130/191 (68.06%), Query Frame = 0


Query: 1   MIGRADIEGSKSNVAMNAWLPQASYPC--------------------------------- 60
           MIGRADIEGSKSNVAMNAWLPQASYPC                                 
Sbjct: 106 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTGNQNQ 165

Query: 61  ---------------------------DVPPQPNSPPDNVFRPDWPAEASLMSKKRGSAP 120
                                      DVPPQPNSPPDNVFRPD PAEASLMSKKRGSAP
Sbjct: 166 TSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPDNVFRPDRPAEASLMSKKRGSAP 225

Query: 121 LPFHGISKITLKVVVFHFRLSAPTYPTPLKSFHKVGLESSSTGSSFPADSAKPVPLAVVS 132
           LPFHGISKITLKVVVFHFRLSAPTYPTPLKSFHKVGLESSSTGSSFPADSAKPVPLAVVS
Sbjct: 226 LPFHGISKITLKVVVFHFRLSAPTYPTPLKSFHKVGLESSSTGSSFPADSAKPVPLAVVS 285

[Close]

BLAST of PI0007033.1 vs. ExPASy TrEMBL
Match: A0A2G2UZC4 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_34294 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.4e-58
Identity = 120/141 (85.11%), Postives = 122/141 (86.52%), Query Frame = 0


Query: 1   MIGRADIEGSKSNVAMNAWLPQASYPCDVPPQPNSPPDNVFRPDWPAE----------AS 60
           MIGRADIEGSKSNVAMNAWLPQASYPCDVPPQPNSPPDNVFRPD PAE          AS
Sbjct: 1   MIGRADIEGSKSNVAMNAWLPQASYPCDVPPQPNSPPDNVFRPDRPAERALXVGSARRAS 60

Query: 61  LMSKKRGSAPLPFHGISKITLKVVVFHFRLSAPTYPTPLKSFHKVGLESSSTGSSFPADS 120
           L SKKRGSAPLP HGISKITLKVVVFHF LS+PTY TPLK+FHKVGLES STGS FPA S
Sbjct: 61  LGSKKRGSAPLPIHGISKITLKVVVFHFCLSSPTYTTPLKTFHKVGLESRSTGSCFPAVS 120

Query: 121 AKPVPLAVVSLDSRQGQWESR 132
           AKPVP AVVSLDSRQGQWESR
Sbjct: 121 AKPVPFAVVSLDSRQGQWESR 141

[Close]

BLAST of PI0007033.1 vs. ExPASy TrEMBL
Match: A0A2N9EWQ3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11088 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.3e-56
Identity = 125/182 (68.68%), Postives = 125/182 (68.68%), Query Frame = 0


Query: 1   MIGRADIEGSKSNVAMNAWLPQASYPC--------------------------------- 60
           MIGRADIEGSKSNVAMNAWLPQASYPC                                 
Sbjct: 140 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTNQTSFYPFVP 199

Query: 61  -------------------DVPPQPNSPPDNVFRPDWPAEASLMSKKRGSAPLPFHGISK 120
                              DVPPQPNSPPDNVFRPD PAEASL SKKRG AP P HGISK
Sbjct: 200 HEISVLVELILGHLRYLLTDVPPQPNSPPDNVFRPDRPAEASLGSKKRGIAPPPIHGISK 259

Query: 121 ITLKVVVFHFRLSAPTYPTPLKSFHKVGLESSSTGSSFPADSAKPVPLAVVSLDSRQGQW 131
           ITLKVVVFHFRLSAPTYPTPLKSFHKVGLESSSTGSSFPADSAKPVPLAVVSLDSRQGQW
Sbjct: 260 ITLKVVVFHFRLSAPTYPTPLKSFHKVGLESSSTGSSFPADSAKPVPLAVVSLDSRQGQW 319

[Close]

BLAST of PI0007033.1 vs. ExPASy TrEMBL
Match: A0A2N9G3N9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21586 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.9e-56
Identity = 126/191 (65.97%), Postives = 126/191 (65.97%), Query Frame = 0


Query: 1    MIGRADIEGSKSNVAMNAWLPQASYPC--------------------------------- 60
            MIGRADIEGSKSNVAMNAWLPQASYPC                                 
Sbjct: 1023 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTGNQNQ 1082

Query: 61   ---------------------------DVPPQPNSPPDNVFRPDWPAEASLMSKKRGSAP 120
                                       DVPPQPNSPPDNVFRPD PAEASL SKKRG AP
Sbjct: 1083 TSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPDNVFRPDRPAEASLGSKKRGIAP 1142

Query: 121  LPFHGISKITLKVVVFHFRLSAPTYPTPLKSFHKVGLESSSTGSSFPADSAKPVPLAVVS 132
             P HGISKITLKVVVFHFRLSAPTYPTPLKSFHKVGLESSSTGSSFPADSAKPVPLAVVS
Sbjct: 1143 PPIHGISKITLKVVVFHFRLSAPTYPTPLKSFHKVGLESSSTGSSFPADSAKPVPLAVVS 1202

[Close]

BLAST of PI0007033.1 vs. ExPASy TrEMBL
Match: A0A2N9GDY6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25510 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.9e-56
Identity = 126/191 (65.97%), Postives = 126/191 (65.97%), Query Frame = 0


Query: 1   MIGRADIEGSKSNVAMNAWLPQASYPC--------------------------------- 60
           MIGRADIEGSKSNVAMNAWLPQASYPC                                 
Sbjct: 140 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTGNQNQ 199

Query: 61  ---------------------------DVPPQPNSPPDNVFRPDWPAEASLMSKKRGSAP 120
                                      DVPPQPNSPPDNVFRPD PAEASL SKKRG AP
Sbjct: 200 TSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPDNVFRPDRPAEASLGSKKRGIAP 259

Query: 121 LPFHGISKITLKVVVFHFRLSAPTYPTPLKSFHKVGLESSSTGSSFPADSAKPVPLAVVS 132
            P HGISKITLKVVVFHFRLSAPTYPTPLKSFHKVGLESSSTGSSFPADSAKPVPLAVVS
Sbjct: 260 PPIHGISKITLKVVVFHFRLSAPTYPTPLKSFHKVGLESSSTGSSFPADSAKPVPLAVVS 319

[Close]

BLAST of PI0007033.1 vs. NCBI nr
Match: KAA0053171.1 (putative senescence-associated protein [Cucumis melo var. makuwa])

HSP 1 Score: 238.0 bits (606), Expect = 4.5e-59
Identity = 130/191 (68.06%), Postives = 130/191 (68.06%), Query Frame = 0


Query: 1   MIGRADIEGSKSNVAMNAWLPQASYPC--------------------------------- 60
           MIGRADIEGSKSNVAMNAWLPQASYPC                                 
Sbjct: 106 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTGNQNQ 165

Query: 61  ---------------------------DVPPQPNSPPDNVFRPDWPAEASLMSKKRGSAP 120
                                      DVPPQPNSPPDNVFRPD PAEASLMSKKRGSAP
Sbjct: 166 TSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPDNVFRPDRPAEASLMSKKRGSAP 225

Query: 121 LPFHGISKITLKVVVFHFRLSAPTYPTPLKSFHKVGLESSSTGSSFPADSAKPVPLAVVS 132
           LPFHGISKITLKVVVFHFRLSAPTYPTPLKSFHKVGLESSSTGSSFPADSAKPVPLAVVS
Sbjct: 226 LPFHGISKITLKVVVFHFRLSAPTYPTPLKSFHKVGLESSSTGSSFPADSAKPVPLAVVS 285

[Close]

BLAST of PI0007033.1 vs. NCBI nr
Match: PHT26094.1 (hypothetical protein CQW23_34294 [Capsicum baccatum])

HSP 1 Score: 234.6 bits (597), Expect = 5.0e-58
Identity = 120/141 (85.11%), Postives = 122/141 (86.52%), Query Frame = 0


Query: 1   MIGRADIEGSKSNVAMNAWLPQASYPCDVPPQPNSPPDNVFRPDWPAE----------AS 60
           MIGRADIEGSKSNVAMNAWLPQASYPCDVPPQPNSPPDNVFRPD PAE          AS
Sbjct: 1   MIGRADIEGSKSNVAMNAWLPQASYPCDVPPQPNSPPDNVFRPDRPAERALXVGSARRAS 60

Query: 61  LMSKKRGSAPLPFHGISKITLKVVVFHFRLSAPTYPTPLKSFHKVGLESSSTGSSFPADS 120
           L SKKRGSAPLP HGISKITLKVVVFHF LS+PTY TPLK+FHKVGLES STGS FPA S
Sbjct: 61  LGSKKRGSAPLPIHGISKITLKVVVFHFCLSSPTYTTPLKTFHKVGLESRSTGSCFPAVS 120

Query: 121 AKPVPLAVVSLDSRQGQWESR 132
           AKPVP AVVSLDSRQGQWESR
Sbjct: 121 AKPVPFAVVSLDSRQGQWESR 141

[Close]

BLAST of PI0007033.1 vs. NCBI nr
Match: KAG6385698.1 (hypothetical protein SASPL_154573 [Salvia splendens])

HSP 1 Score: 229.9 bits (585), Expect = 1.2e-56
Identity = 125/191 (65.45%), Postives = 126/191 (65.97%), Query Frame = 0


Query: 1   MIGRADIEGSKSNVAMNAWLPQASYPC--------------------------------- 60
           MIGRA+IEGSKSNVAMNAWLPQASYPC                                 
Sbjct: 95  MIGRANIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSLGHAFTVRIRTGNQNQ 154

Query: 61  ---------------------------DVPPQPNSPPDNVFRPDWPAEASLMSKKRGSAP 120
                                      DVPPQPNSPPDNVFRPDWP EASL SKKRG AP
Sbjct: 155 TSFYPSVLHEISVLVELILGHLRYLLTDVPPQPNSPPDNVFRPDWPTEASLGSKKRGDAP 214

Query: 121 LPFHGISKITLKVVVFHFRLSAPTYPTPLKSFHKVGLESSSTGSSFPADSAKPVPLAVVS 132
           LP HGISKITLKVVVFHFRLSAPTYPTPLKSFHKV LESSSTGSSFPADSAKPVPLAVVS
Sbjct: 215 LPIHGISKITLKVVVFHFRLSAPTYPTPLKSFHKVRLESSSTGSSFPADSAKPVPLAVVS 274

[Close]

BLAST of PI0007033.1 vs. NCBI nr
Match: KAG6382934.1 (hypothetical protein SASPL_157332 [Salvia splendens])

HSP 1 Score: 229.6 bits (584), Expect = 1.6e-56
Identity = 126/191 (65.97%), Postives = 126/191 (65.97%), Query Frame = 0


Query: 1    MIGRADIEGSKSNVAMNAWLPQASYPC--------------------------------- 60
            MIGRADIEGSKSNVAMNAWLPQASYPC                                 
Sbjct: 2854 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSLGHAFTVRIRTGNQNQ 2913

Query: 61   ---------------------------DVPPQPNSPPDNVFRPDWPAEASLMSKKRGSAP 120
                                       DVPPQPNSPPDNVFRPD P EASL SKKRG AP
Sbjct: 2914 TSFYPSVLHEISVLVELILGHLRYLLTDVPPQPNSPPDNVFRPDRPTEASLGSKKRGDAP 2973

Query: 121  LPFHGISKITLKVVVFHFRLSAPTYPTPLKSFHKVGLESSSTGSSFPADSAKPVPLAVVS 132
            LP HGISKITLKVVVFHFRLSAPTYPTPLKSFHKVGLESSSTGSSFPADSAKPVPLAVVS
Sbjct: 2974 LPIHGISKITLKVVVFHFRLSAPTYPTPLKSFHKVGLESSSTGSSFPADSAKPVPLAVVS 3033

[Close]

BLAST of PI0007033.1 vs. NCBI nr
Match: KAG6383036.1 (hypothetical protein SASPL_157226 [Salvia splendens])

HSP 1 Score: 229.6 bits (584), Expect = 1.6e-56
Identity = 126/191 (65.97%), Postives = 126/191 (65.97%), Query Frame = 0


Query: 1    MIGRADIEGSKSNVAMNAWLPQASYPC--------------------------------- 60
            MIGRADIEGSKSNVAMNAWLPQASYPC                                 
Sbjct: 2406 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSLGHAFTVRIRTGNQNQ 2465

Query: 61   ---------------------------DVPPQPNSPPDNVFRPDWPAEASLMSKKRGSAP 120
                                       DVPPQPNSPPDNVFRPD P EASL SKKRG AP
Sbjct: 2466 TSFYPSVLHEISVLVELILGHLRYLLTDVPPQPNSPPDNVFRPDRPTEASLGSKKRGDAP 2525

Query: 121  LPFHGISKITLKVVVFHFRLSAPTYPTPLKSFHKVGLESSSTGSSFPADSAKPVPLAVVS 132
            LP HGISKITLKVVVFHFRLSAPTYPTPLKSFHKVGLESSSTGSSFPADSAKPVPLAVVS
Sbjct: 2526 LPIHGISKITLKVVVFHFRLSAPTYPTPLKSFHKVGLESSSTGSSFPADSAKPVPLAVVS 2585

The following BLAST results are available for this feature:

BLAST of PI0007033.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0007033.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UI06	2.2e-59	68.06	Putative senescence-associated protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A2G2UZC4	2.4e-58	85.11	Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_34294 PE=4 SV=1	[more]
A0A2N9EWQ3	1.3e-56	68.68	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11088 PE=4 SV=1	[more]
A0A2N9G3N9	2.9e-56	65.97	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21586 PE=4 SV=1	[more]
A0A2N9GDY6	2.9e-56	65.97	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25510 PE=4 SV=1	[more]

BLAST of PI0007033.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053171.1	4.5e-59	68.06	putative senescence-associated protein [Cucumis melo var. makuwa]	[more]
PHT26094.1	5.0e-58	85.11	hypothetical protein CQW23_34294 [Capsicum baccatum]	[more]
KAG6385698.1	1.2e-56	65.45	hypothetical protein SASPL_154573 [Salvia splendens]	[more]
KAG6382934.1	1.6e-56	65.97	hypothetical protein SASPL_157332 [Salvia splendens]	[more]
KAG6383036.1	1.6e-56	65.97	hypothetical protein SASPL_157226 [Salvia splendens]	[more]

BLAST of PI0007033.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33047:SF22	SENESCENCE-ASSOCIATED PROTEIN	coord: 28..130 coord: 1..27
None	No IPR available	PANTHER	PTHR33047	PROTEIN TAR1	coord: 28..130
None	No IPR available	PANTHER	PTHR33047	PROTEIN TAR1	coord: 1..27

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0007033	PI0007033	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0007033.1-exon	PI0007033.1-exon-chr10:7467..7548	exon
PI0007033.1-exon	PI0007033.1-exon-chr10:7727..8040	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0007033.1-cds	PI0007033.1-cds-chr10:7467..7548	CDS
PI0007033.1-cds	PI0007033.1-cds-chr10:7727..8040	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0007033.1	PI0007033.1-protein	polypeptide