PI0004672.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0004672.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr12: 15887028 .. 15887620 (-)
Sequence length	399
RNA-Seq Expression	PI0004672.1
Synteny	PI0004672.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGGAAATGGTAAAAGGGGTCCCATTAAAGAGAAAGATGAAGAGAATGCACATGATTTGGATCCACAAAAACAGGTAAGAAAAGAATGAAAAGAAAGGGGCGGATTTGGAGCCACAGGATGGGGTTTGAGAGGTCGATTTGAGGGTTTTGGGGACTGAACGAAGTGGAAGAAGACAAATTGGGAAAAGAAATTGTCGGATGAATGATAATGGGGATGGAGAAAATCATAGTAATTTGTGTTGTAATTGTCGAAGCAAAAGCAAAAGATTCAACAAATACAAAATTCCACTCCTTGGCTTAGGGTTTACTACTGCTTTTCCCCCCTTTTATTGATTCTCTGTTTAAAGTACAATCCTTAAGTACAATTCTTAAAGTAATGGAAAAGATTGTGGCTAGCTTTTTTCTAGTGATTAAAGTTGTTTTTCTTGTAACTTCAATTTGTGACCGCTACCGAAGAGCACCTTGTAGTAAGGTTGCTCATGTCTTTGCAACAATAGATATCAGACTTCCTTACATATTTACTTGTACCGTATCTTCCTCGAGTAAGGATCAAAAGAACTTCTTTGGTTTGAACTTTTTTCTGAACTAA

mRNA sequence

ATGATCGGAAATGGTAAAAGGGGTCCCATTAAAGAGAAAGATGAAGAGAATGCACATGATTTGGATCCACAAAAACAGGTCGATTTGAGGGTTTTGGGGACTGAACGAAGTGGAAGAAGACAAATTGGGAAAAGAAATTGTCGGATGAATGATAATGGGGATGGAGAAAATCATAGTAATTTGTTAATGGAAAAGATTGTGGCTAGCTTTTTTCTAGTGATTAAAGTTGTTTTTCTTGTAACTTCAATTTGTGACCGCTACCGAAGAGCACCTTGTAGTAAGGTTGCTCATGTCTTTGCAACAATAGATATCAGACTTCCTTACATATTTACTTGTACCGTATCTTCCTCGAGTAAGGATCAAAAGAACTTCTTTGGTTTGAACTTTTTTCTGAACTAA

Coding sequence (CDS)

ATGATCGGAAATGGTAAAAGGGGTCCCATTAAAGAGAAAGATGAAGAGAATGCACATGATTTGGATCCACAAAAACAGGTCGATTTGAGGGTTTTGGGGACTGAACGAAGTGGAAGAAGACAAATTGGGAAAAGAAATTGTCGGATGAATGATAATGGGGATGGAGAAAATCATAGTAATTTGTTAATGGAAAAGATTGTGGCTAGCTTTTTTCTAGTGATTAAAGTTGTTTTTCTTGTAACTTCAATTTGTGACCGCTACCGAAGAGCACCTTGTAGTAAGGTTGCTCATGTCTTTGCAACAATAGATATCAGACTTCCTTACATATTTACTTGTACCGTATCTTCCTCGAGTAAGGATCAAAAGAACTTCTTTGGTTTGAACTTTTTTCTGAACTAA

Protein sequence

MIGNGKRGPIKEKDEENAHDLDPQKQVDLRVLGTERSGRRQIGKRNCRMNDNGDGENHSNLLMEKIVASFFLVIKVVFLVTSICDRYRRAPCSKVAHVFATIDIRLPYIFTCTVSSSSKDQKNFFGLNFFLN

Homology

[Close]

BLAST of PI0004672.1 vs. ExPASy TrEMBL
Match: A0A0A0LTC1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173180 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 9.6e-31
Identity = 77/104 (74.04%), Postives = 85/104 (81.73%), Query Frame = 0


Query: 1   MIGNGKRGPIKEKDEENAHDLDPQKQVDLRVLGTERSGRRQIGKRNCRMNDNGDGENHSN 60
           M+G+GKRGPIKEKDEENAH LDPQKQ        ERSGRRQIGKRNCRMND+ D      
Sbjct: 1   MMGSGKRGPIKEKDEENAHYLDPQKQ------EIERSGRRQIGKRNCRMNDDEDEGRKKI 60

Query: 61  LLMEKIVASFFLVIKVVFLVTSICDRYRRAPCSKVAHVFATIDI 105
           ++MEKIVASFFLVIKVVFLVT ICDRY+ AP SKVAHVFAT++I
Sbjct: 61  IVMEKIVASFFLVIKVVFLVTLICDRYQIAPPSKVAHVFATVEI 98

[Close]

BLAST of PI0004672.1 vs. NCBI nr
Match: KGN64998.1 (hypothetical protein Csa_022732 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 2.0e-30
Identity = 77/104 (74.04%), Postives = 85/104 (81.73%), Query Frame = 0


Query: 1   MIGNGKRGPIKEKDEENAHDLDPQKQVDLRVLGTERSGRRQIGKRNCRMNDNGDGENHSN 60
           M+G+GKRGPIKEKDEENAH LDPQKQ        ERSGRRQIGKRNCRMND+ D      
Sbjct: 1   MMGSGKRGPIKEKDEENAHYLDPQKQ------EIERSGRRQIGKRNCRMNDDEDEGRKKI 60

Query: 61  LLMEKIVASFFLVIKVVFLVTSICDRYRRAPCSKVAHVFATIDI 105
           ++MEKIVASFFLVIKVVFLVT ICDRY+ AP SKVAHVFAT++I
Sbjct: 61  IVMEKIVASFFLVIKVVFLVTLICDRYQIAPPSKVAHVFATVEI 98

The following BLAST results are available for this feature:

BLAST of PI0004672.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0004672.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTC1	9.6e-31	74.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173180 PE=4 SV=1	[more]

BLAST of PI0004672.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64998.1	2.0e-30	74.04	hypothetical protein Csa_022732 [Cucumis sativus]	[more]

BLAST of PI0004672.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0004672	PI0004672	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0004672.1-exon	PI0004672.1-exon-chr12:15887028..15887242	exon
PI0004672.1-exon	PI0004672.1-exon-chr12:15887379..15887484	exon
PI0004672.1-exon	PI0004672.1-exon-chr12:15887543..15887620	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0004672.1-cds	PI0004672.1-cds-chr12:15887028..15887242	CDS
PI0004672.1-cds	PI0004672.1-cds-chr12:15887379..15887484	CDS
PI0004672.1-cds	PI0004672.1-cds-chr12:15887543..15887620	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0004672.1	PI0004672.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane