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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGATCGGAAATGGTAAAAGGGGTCCCATTAAAGAGAAAGATGAAGAGAATGCACATGATTTGGATCCACAAAAACAGGTAAGAAAAGAATGAAAAGAAAGGGGCGGATTTGGAGCCACAGGATGGGGTTTGAGAGGTCGATTTGAGGGTTTTGGGGACTGAACGAAGTGGAAGAAGACAAATTGGGAAAAGAAATTGTCGGATGAATGATAATGGGGATGGAGAAAATCATAGTAATTTGTGTTGTAATTGTCGAAGCAAAAGCAAAAGATTCAACAAATACAAAATTCCACTCCTTGGCTTAGGGTTTACTACTGCTTTTCCCCCCTTTTATTGATTCTCTGTTTAAAGTACAATCCTTAAGTACAATTCTTAAAGTAATGGAAAAGATTGTGGCTAGCTTTTTTCTAGTGATTAAAGTTGTTTTTCTTGTAACTTCAATTTGTGACCGCTACCGAAGAGCACCTTGTAGTAAGGTTGCTCATGTCTTTGCAACAATAGATATCAGACTTCCTTACATATTTACTTGTACCGTATCTTCCTCGAGTAAGGATCAAAAGAACTTCTTTGGTTTGAACTTTTTTCTGAACTAA mRNA sequence ATGATCGGAAATGGTAAAAGGGGTCCCATTAAAGAGAAAGATGAAGAGAATGCACATGATTTGGATCCACAAAAACAGGTCGATTTGAGGGTTTTGGGGACTGAACGAAGTGGAAGAAGACAAATTGGGAAAAGAAATTGTCGGATGAATGATAATGGGGATGGAGAAAATCATAGTAATTTGTTAATGGAAAAGATTGTGGCTAGCTTTTTTCTAGTGATTAAAGTTGTTTTTCTTGTAACTTCAATTTGTGACCGCTACCGAAGAGCACCTTGTAGTAAGGTTGCTCATGTCTTTGCAACAATAGATATCAGACTTCCTTACATATTTACTTGTACCGTATCTTCCTCGAGTAAGGATCAAAAGAACTTCTTTGGTTTGAACTTTTTTCTGAACTAA Coding sequence (CDS) ATGATCGGAAATGGTAAAAGGGGTCCCATTAAAGAGAAAGATGAAGAGAATGCACATGATTTGGATCCACAAAAACAGGTCGATTTGAGGGTTTTGGGGACTGAACGAAGTGGAAGAAGACAAATTGGGAAAAGAAATTGTCGGATGAATGATAATGGGGATGGAGAAAATCATAGTAATTTGTTAATGGAAAAGATTGTGGCTAGCTTTTTTCTAGTGATTAAAGTTGTTTTTCTTGTAACTTCAATTTGTGACCGCTACCGAAGAGCACCTTGTAGTAAGGTTGCTCATGTCTTTGCAACAATAGATATCAGACTTCCTTACATATTTACTTGTACCGTATCTTCCTCGAGTAAGGATCAAAAGAACTTCTTTGGTTTGAACTTTTTTCTGAACTAA Protein sequence MIGNGKRGPIKEKDEENAHDLDPQKQVDLRVLGTERSGRRQIGKRNCRMNDNGDGENHSNLLMEKIVASFFLVIKVVFLVTSICDRYRRAPCSKVAHVFATIDIRLPYIFTCTVSSSSKDQKNFFGLNFFLN
Homology
BLAST of PI0004672 vs. ExPASy TrEMBL
Match: A0A0A0LTC1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173180 PE=4 SV=1) HSP 1 Score: 142.9 bits (359), Expect = 9.6e-31 Identity = 77/104 (74.04%), Postives = 85/104 (81.73%), Query Frame = 0
Query: 1 MIGNGKRGPIKEKDEENAHDLDPQKQVDLRVLGTERSGRRQIGKRNCRMNDNGDGENHSN 60
M+G+GKRGPIKEKDEENAH LDPQKQ ERSGRRQIGKRNCRMND+ D
Sbjct: 1 MMGSGKRGPIKEKDEENAHYLDPQKQ------EIERSGRRQIGKRNCRMNDDEDEGRKKI 60
Query: 61 LLMEKIVASFFLVIKVVFLVTSICDRYRRAPCSKVAHVFATIDI 105
++MEKIVASFFLVIKVVFLVT ICDRY+ AP SKVAHVFAT++I
Sbjct: 61 IVMEKIVASFFLVIKVVFLVTLICDRYQIAPPSKVAHVFATVEI 98
BLAST of PI0004672 vs. NCBI nr
Match: KGN64998.1 (hypothetical protein Csa_022732 [Cucumis sativus]) HSP 1 Score: 142.9 bits (359), Expect = 2.0e-30 Identity = 77/104 (74.04%), Postives = 85/104 (81.73%), Query Frame = 0
Query: 1 MIGNGKRGPIKEKDEENAHDLDPQKQVDLRVLGTERSGRRQIGKRNCRMNDNGDGENHSN 60
M+G+GKRGPIKEKDEENAH LDPQKQ ERSGRRQIGKRNCRMND+ D
Sbjct: 1 MMGSGKRGPIKEKDEENAHYLDPQKQ------EIERSGRRQIGKRNCRMNDDEDEGRKKI 60
Query: 61 LLMEKIVASFFLVIKVVFLVTSICDRYRRAPCSKVAHVFATIDI 105
++MEKIVASFFLVIKVVFLVT ICDRY+ AP SKVAHVFAT++I
Sbjct: 61 IVMEKIVASFFLVIKVVFLVTLICDRYQIAPPSKVAHVFATVEI 98
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LTC1 | 9.6e-31 | 74.04 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173180 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KGN64998.1 | 2.0e-30 | 74.04 | hypothetical protein Csa_022732 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 7..23 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..23 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
|
