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PI0003842.1 (mRNA) Melon (PI 482460) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGGTGGAATATCAAATCTCTCGATACTCAACTATGGCAGTGGAAGTAGATACAGATCTTCTGATGTTGACAAAAATCCCGAAGCATCCATCACCAATCGAACTAATTGGCTTGCTCTTCACCCTACGTCGCCGTTTCAACCACTTTCAGGTGTTAGAGAATGGTGAACGACAATTAATAGAGGAACGAGAAATATCAAAAGTTCCTCTATGTGACCACCAATTCCCCGTTGAAATCTTTAATGGAGACAACAATTCTCTATTCCAATACCTTTGTTGTAGCTTCGAAAACTACGAATCTAAGATAGATGCAGAGGTAGTCGCAAGTGTCCTAATCGAGCAGTGGATTGATATAAGGGACCAAGTGAATTCGAGAAGCTGCGATAAAATATTTTCAATGGCAGTAAATTTAACAATTACAGATGTTGTGGTTCGATATGTTATTGGCGATGATGGCAACACATTTGGTGGAGAAGATTTTAGTGTGGTTCCAGCATGCGACAAAACAGTTAAGAAGATGTTGAAGAGATTGGAAATGAGAGACGAAGATAAAAGAATTTGTGTGATATGTTTGGATGAAGTTAAGAAAAAGAAGAATGGAAGATGTTTGGAAATGCCTTGTTTACATGTATTTCATGGGGAATGCATTGAAAATTGGTTGAAAAATAGTCATTGTTGTCCAATTTGTAGATTTGAAATGCCAGTGAAATTTTTGGAAACGTGA ATGGAGGTGGAATATCAAATCTCTCGATACTCAACTATGGCAGTGGAAGTAGATACAGATCTTCTGATGTTGACAAAAATCCCGAAGCATCCATCACCAATCGAACTAATTGGCTTGCTCTTCACCCTACGTCGCCGTTTCAACCACTTTCAGGTGTTAGAGAATGGTGAACGACAATTAATAGAGGAACGAGAAATATCAAAAGTTCCTCTATGTGACCACCAATTCCCCGTTGAAATCTTTAATGGAGACAACAATTCTCTATTCCAATACCTTTGTTGTAGCTTCGAAAACTACGAATCTAAGATAGATGCAGAGGTAGTCGCAAGTGTCCTAATCGAGCAGTGGATTGATATAAGGGACCAAGTGAATTCGAGAAGCTGCGATAAAATATTTTCAATGGCAGTAAATTTAACAATTACAGATGTTGTGGTTCGATATGTTATTGGCGATGATGGCAACACATTTGGTGGAGAAGATTTTAGTGTGGTTCCAGCATGCGACAAAACAGTTAAGAAGATGTTGAAGAGATTGGAAATGAGAGACGAAGATAAAAGAATTTGTGTGATATGTTTGGATGAAGTTAAGAAAAAGAAGAATGGAAGATGTTTGGAAATGCCTTGTTTACATGTATTTCATGGGGAATGCATTGAAAATTGGTTGAAAAATAGTCATTGTTGTCCAATTTGTAGATTTGAAATGCCAGTGAAATTTTTGGAAACGTGA ATGGAGGTGGAATATCAAATCTCTCGATACTCAACTATGGCAGTGGAAGTAGATACAGATCTTCTGATGTTGACAAAAATCCCGAAGCATCCATCACCAATCGAACTAATTGGCTTGCTCTTCACCCTACGTCGCCGTTTCAACCACTTTCAGGTGTTAGAGAATGGTGAACGACAATTAATAGAGGAACGAGAAATATCAAAAGTTCCTCTATGTGACCACCAATTCCCCGTTGAAATCTTTAATGGAGACAACAATTCTCTATTCCAATACCTTTGTTGTAGCTTCGAAAACTACGAATCTAAGATAGATGCAGAGGTAGTCGCAAGTGTCCTAATCGAGCAGTGGATTGATATAAGGGACCAAGTGAATTCGAGAAGCTGCGATAAAATATTTTCAATGGCAGTAAATTTAACAATTACAGATGTTGTGGTTCGATATGTTATTGGCGATGATGGCAACACATTTGGTGGAGAAGATTTTAGTGTGGTTCCAGCATGCGACAAAACAGTTAAGAAGATGTTGAAGAGATTGGAAATGAGAGACGAAGATAAAAGAATTTGTGTGATATGTTTGGATGAAGTTAAGAAAAAGAAGAATGGAAGATGTTTGGAAATGCCTTGTTTACATGTATTTCATGGGGAATGCATTGAAAATTGGTTGAAAAATAGTCATTGTTGTCCAATTTGTAGATTTGAAATGCCAGTGAAATTTTTGGAAACGTGA MEVEYQISRYSTMAVEVDTDLLMLTKIPKHPSPIELIGLLFTLRRRFNHFQVLENGERQLIEEREISKVPLCDHQFPVEIFNGDNNSLFQYLCCSFENYESKIDAEVVASVLIEQWIDIRDQVNSRSCDKIFSMAVNLTITDVVVRYVIGDDGNTFGGEDFSVVPACDKTVKKMLKRLEMRDEDKRICVICLDEVKKKKNGRCLEMPCLHVFHGECIENWLKNSHCCPICRFEMPVKFLET Homology
BLAST of PI0003842.1 vs. ExPASy Swiss-Prot
Match: Q9LQX2 (E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana OX=3702 GN=MPSR1 PE=1 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 7.4e-10 Identity = 28/49 (57.14%), Postives = 34/49 (69.39%), Query Frame = 0
BLAST of PI0003842.1 vs. ExPASy Swiss-Prot
Match: Q9SNB6 (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 2.1e-09 Identity = 29/74 (39.19%), Postives = 43/74 (58.11%), Query Frame = 0
BLAST of PI0003842.1 vs. ExPASy Swiss-Prot
Match: Q9P0P0 (E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens OX=9606 GN=RNF181 PE=1 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 2.8e-09 Identity = 29/77 (37.66%), Postives = 45/77 (58.44%), Query Frame = 0
BLAST of PI0003842.1 vs. ExPASy Swiss-Prot
Match: Q3T0W3 (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus OX=9913 GN=RNF181 PE=2 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 2.4e-08 Identity = 28/77 (36.36%), Postives = 43/77 (55.84%), Query Frame = 0
BLAST of PI0003842.1 vs. ExPASy Swiss-Prot
Match: Q08109 (ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HRD1 PE=1 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 5.3e-08 Identity = 26/72 (36.11%), Postives = 40/72 (55.56%), Query Frame = 0
BLAST of PI0003842.1 vs. ExPASy TrEMBL
Match: A0A0A0L236 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G419590 PE=4 SV=1) HSP 1 Score: 418.3 bits (1074), Expect = 2.2e-113 Identity = 199/235 (84.68%), Postives = 219/235 (93.19%), Query Frame = 0
BLAST of PI0003842.1 vs. ExPASy TrEMBL
Match: A0A5A7SNF1 (RING finger protein 141-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00770 PE=4 SV=1) HSP 1 Score: 416.8 bits (1070), Expect = 6.3e-113 Identity = 195/235 (82.98%), Postives = 217/235 (92.34%), Query Frame = 0
BLAST of PI0003842.1 vs. ExPASy TrEMBL
Match: A0A1S4E0Q9 (RING finger protein 141-like OS=Cucumis melo OX=3656 GN=LOC103495859 PE=4 SV=1) HSP 1 Score: 416.8 bits (1070), Expect = 6.3e-113 Identity = 195/235 (82.98%), Postives = 217/235 (92.34%), Query Frame = 0
BLAST of PI0003842.1 vs. ExPASy TrEMBL
Match: A0A6J1GK53 (ERAD-associated E3 ubiquitin-protein ligase HRD1-like OS=Cucurbita moschata OX=3662 GN=LOC111455016 PE=4 SV=1) HSP 1 Score: 295.8 bits (756), Expect = 1.6e-76 Identity = 147/238 (61.76%), Postives = 183/238 (76.89%), Query Frame = 0
BLAST of PI0003842.1 vs. ExPASy TrEMBL
Match: A0A6J1I8N9 (ERAD-associated E3 ubiquitin-protein ligase HRD1-like OS=Cucurbita maxima OX=3661 GN=LOC111471014 PE=4 SV=1) HSP 1 Score: 289.3 bits (739), Expect = 1.5e-74 Identity = 145/238 (60.92%), Postives = 181/238 (76.05%), Query Frame = 0
BLAST of PI0003842.1 vs. NCBI nr
Match: XP_011654386.1 (RING finger protein 141 [Cucumis sativus] >KGN54667.1 hypothetical protein Csa_012982 [Cucumis sativus]) HSP 1 Score: 418.3 bits (1074), Expect = 4.5e-113 Identity = 199/235 (84.68%), Postives = 219/235 (93.19%), Query Frame = 0
BLAST of PI0003842.1 vs. NCBI nr
Match: XP_016901804.1 (PREDICTED: RING finger protein 141-like [Cucumis melo] >KAA0025781.1 RING finger protein 141-like [Cucumis melo var. makuwa] >TYK09674.1 RING finger protein 141-like protein [Cucumis melo var. makuwa]) HSP 1 Score: 416.8 bits (1070), Expect = 1.3e-112 Identity = 195/235 (82.98%), Postives = 217/235 (92.34%), Query Frame = 0
BLAST of PI0003842.1 vs. NCBI nr
Match: KAG6571896.1 (E3 ubiquitin-protein ligase MPSR1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 298.1 bits (762), Expect = 6.7e-77 Identity = 149/238 (62.61%), Postives = 183/238 (76.89%), Query Frame = 0
BLAST of PI0003842.1 vs. NCBI nr
Match: XP_023511497.1 (ERAD-associated E3 ubiquitin-protein ligase HRD1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 297.7 bits (761), Expect = 8.8e-77 Identity = 148/238 (62.18%), Postives = 184/238 (77.31%), Query Frame = 0
BLAST of PI0003842.1 vs. NCBI nr
Match: XP_022952293.1 (ERAD-associated E3 ubiquitin-protein ligase HRD1-like [Cucurbita moschata] >KAG7011584.1 HRD1, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 295.8 bits (756), Expect = 3.3e-76 Identity = 147/238 (61.76%), Postives = 183/238 (76.89%), Query Frame = 0
BLAST of PI0003842.1 vs. TAIR 10
Match: AT3G14970.1 (RING/U-box superfamily protein ) HSP 1 Score: 73.6 bits (179), Expect = 2.5e-13 Identity = 47/157 (29.94%), Postives = 84/157 (53.50%), Query Frame = 0
BLAST of PI0003842.1 vs. TAIR 10
Match: AT3G15740.1 (RING/U-box superfamily protein ) HSP 1 Score: 70.1 bits (170), Expect = 2.8e-12 Identity = 38/99 (38.38%), Postives = 53/99 (53.54%), Query Frame = 0
BLAST of PI0003842.1 vs. TAIR 10
Match: AT1G21960.1 (RING/U-box superfamily protein ) HSP 1 Score: 67.0 bits (162), Expect = 2.3e-11 Identity = 41/157 (26.11%), Postives = 77/157 (49.04%), Query Frame = 0
BLAST of PI0003842.1 vs. TAIR 10
Match: AT1G14200.1 (RING/U-box superfamily protein ) HSP 1 Score: 66.6 bits (161), Expect = 3.1e-11 Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 0
BLAST of PI0003842.1 vs. TAIR 10
Match: AT1G26800.1 (RING/U-box superfamily protein ) HSP 1 Score: 65.9 bits (159), Expect = 5.2e-11 Identity = 28/49 (57.14%), Postives = 34/49 (69.39%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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