PI0003729.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0003729.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr03: 12272664 .. 12273056 (-)
Sequence length	393
RNA-Seq Expression	PI0003729.1
Synteny	PI0003729.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATAGCCAAGGAGTGGATATGTCACCAAATGACATGTTAGGAACACGTGCAGGTCGATCAAGTGAAGGACGAAATTGTTCAAGTGGAAGTAAGTGGAAACGAGGTGGCCAACATTATGAAATAGTGGAGGTGATCAGGAATGAAATGGACTTTGCAAACGATCAATTAAAGGCAATTGCAGATTGGCCAAAAGAAAAGTGTGCAACAGAGGTCGAATTGCGTGCTGAAGTCGTGAAACAATTGCAAGATTTCCCTGAACTACAGAGCCGAGATAGAATAAAGCTTATGCGAATCATATTTCGTAGTGTGGATGACATAGAGGGATTCTTGTCAGTTCCAACAGAACTTAAATTGGAGTATTGCAATATTCTCTTGGAAGAAAATGTTTGA

mRNA sequence

ATGTATAGCCAAGGAGTGGATATGTCACCAAATGACATGTTAGGAACACGTGCAGGTCGATCAAGTGAAGGACGAAATTGTTCAAGTGGAAGTAAGTGGAAACGAGGTGGCCAACATTATGAAATAGTGGAGGTGATCAGGAATGAAATGGACTTTGCAAACGATCAATTAAAGGCAATTGCAGATTGGCCAAAAGAAAAGTGTGCAACAGAGGTCGAATTGCGTGCTGAAGTCGTGAAACAATTGCAAGATTTCCCTGAACTACAGAGCCGAGATAGAATAAAGCTTATGCGAATCATATTTCGTAGTGTGGATGACATAGAGGGATTCTTGTCAGTTCCAACAGAACTTAAATTGGAGTATTGCAATATTCTCTTGGAAGAAAATGTTTGA

Coding sequence (CDS)

ATGTATAGCCAAGGAGTGGATATGTCACCAAATGACATGTTAGGAACACGTGCAGGTCGATCAAGTGAAGGACGAAATTGTTCAAGTGGAAGTAAGTGGAAACGAGGTGGCCAACATTATGAAATAGTGGAGGTGATCAGGAATGAAATGGACTTTGCAAACGATCAATTAAAGGCAATTGCAGATTGGCCAAAAGAAAAGTGTGCAACAGAGGTCGAATTGCGTGCTGAAGTCGTGAAACAATTGCAAGATTTCCCTGAACTACAGAGCCGAGATAGAATAAAGCTTATGCGAATCATATTTCGTAGTGTGGATGACATAGAGGGATTCTTGTCAGTTCCAACAGAACTTAAATTGGAGTATTGCAATATTCTCTTGGAAGAAAATGTTTGA

Protein sequence

MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAIADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRIIFRSVDDIEGFLSVPTELKLEYCNILLEENV

Homology

[Close]

BLAST of PI0003729.1 vs. ExPASy TrEMBL
Match: A0A5A7SQU2 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold472G00070 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.0e-45
Identity = 94/127 (74.02%), Postives = 113/127 (88.98%), Query Frame = 0


Query: 1   MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAI 60
           MYSQGV MSP++M G RAG++SE +NCSSGSK K+G +HYE VEVI++ ++F NDQLKAI
Sbjct: 370 MYSQGVHMSPDEMFGIRAGQASERKNCSSGSKRKQGSKHYETVEVIKSAIEFGNDQLKAI 429

Query: 61  ADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRIIFRSVDDIEGFLSVPTELKLE 120
           A+WPKEK ATEVELRAEV+KQLQD PELQSRDR KL++I+FRSV+ IEGFLS+PTE KLE
Sbjct: 430 ANWPKEKRATEVELRAEVMKQLQDIPELQSRDRAKLIQILFRSVEAIEGFLSIPTERKLE 489

Query: 121 YCNILLE 128
           YCNILL+
Sbjct: 490 YCNILLQ 496

[Close]

BLAST of PI0003729.1 vs. ExPASy TrEMBL
Match: A0A0A0KFW0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G116150 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.0e-45
Identity = 97/130 (74.62%), Postives = 111/130 (85.38%), Query Frame = 0


Query: 1   MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAI 60
           MYSQG+DM P++MLGTR  +SSEGRNCSSGSK K GGQHYE V+VI NEM+  NDQLKAI
Sbjct: 1   MYSQGLDMPPDEMLGTR--QSSEGRNCSSGSKRKHGGQHYEAVDVISNEMEVRNDQLKAI 60

Query: 61  ADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRIIFRSVDDIEGFLSVPTELKLE 120
           A+W KEK ATEVEL  EVVKQLQD  EL++RDR+KLM+IIF  VDDIEGFLS PT+LKLE
Sbjct: 61  ANWSKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQIIFHMVDDIEGFLSCPTKLKLE 120

Query: 121 YCNILLEENV 131
           YC +LLE+NV
Sbjct: 121 YCRVLLEDNV 128

[Close]

BLAST of PI0003729.1 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 4.4e-44
Identity = 93/130 (71.54%), Postives = 112/130 (86.15%), Query Frame = 0


Query: 1   MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAI 60
           MYSQGV MSP++M G RAG++SE RNCSS SK KRG + YE VEVIR+ M+F N+QLKAI
Sbjct: 177 MYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAI 236

Query: 61  ADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRIIFRSVDDIEGFLSVPTELKLE 120
           ADWPKEK A EVE+RA+VVKQLQD P+L+S+DR KLM+I+FRS++ IEGFLS+PTELKLE
Sbjct: 237 ADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLE 296

Query: 121 YCNILLEENV 131
           YCNILL+  V
Sbjct: 297 YCNILLQNIV 306

[Close]

BLAST of PI0003729.1 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 4.4e-44
Identity = 93/130 (71.54%), Postives = 112/130 (86.15%), Query Frame = 0


Query: 1   MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAI 60
           MYSQGV MSP++M G RAG++SE RNCSS SK KRG + YE VEVIR+ M+F N+QLKAI
Sbjct: 177 MYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAI 236

Query: 61  ADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRIIFRSVDDIEGFLSVPTELKLE 120
           ADWPKEK A EVE+RA+VVKQLQD P+L+S+DR KLM+I+FRS++ IEGFLS+PTELKLE
Sbjct: 237 ADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLE 296

Query: 121 YCNILLEENV 131
           YCNILL+  V
Sbjct: 297 YCNILLQNIV 306

[Close]

BLAST of PI0003729.1 vs. ExPASy TrEMBL
Match: A0A5D3CT52 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5G00400 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.8e-43
Identity = 93/127 (73.23%), Postives = 106/127 (83.46%), Query Frame = 0


Query: 1   MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAI 60
           MYSQGV MS N+M G R G++SE RNCSSGSK KRG +HYE VEVIR+ M+F NDQLK I
Sbjct: 1   MYSQGVYMSQNEMFGIRVGQASERRNCSSGSKRKRGSEHYETVEVIRSAMEFGNDQLKTI 60

Query: 61  ADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRIIFRSVDDIEGFLSVPTELKLE 120
           A+WPKEK  TEVELRAEVVKQLQ+  EL SRDR KLM+I+F SV+ IEGFLS+P ELKLE
Sbjct: 61  ANWPKEKRVTEVELRAEVVKQLQNILELPSRDRAKLMQILFHSVEAIEGFLSIPIELKLE 120

Query: 121 YCNILLE 128
           YCNILL+
Sbjct: 121 YCNILLQ 127

[Close]

BLAST of PI0003729.1 vs. NCBI nr
Match: KAA0033290.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 192.6 bits (488), Expect = 2.1e-45
Identity = 94/127 (74.02%), Postives = 113/127 (88.98%), Query Frame = 0


Query: 1   MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAI 60
           MYSQGV MSP++M G RAG++SE +NCSSGSK K+G +HYE VEVI++ ++F NDQLKAI
Sbjct: 370 MYSQGVHMSPDEMFGIRAGQASERKNCSSGSKRKQGSKHYETVEVIKSAIEFGNDQLKAI 429

Query: 61  ADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRIIFRSVDDIEGFLSVPTELKLE 120
           A+WPKEK ATEVELRAEV+KQLQD PELQSRDR KL++I+FRSV+ IEGFLS+PTE KLE
Sbjct: 430 ANWPKEKRATEVELRAEVMKQLQDIPELQSRDRAKLIQILFRSVEAIEGFLSIPTERKLE 489

Query: 121 YCNILLE 128
           YCNILL+
Sbjct: 490 YCNILLQ 496

[Close]

BLAST of PI0003729.1 vs. NCBI nr
Match: KAE8646815.1 (hypothetical protein Csa_005367, partial [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 4.8e-45
Identity = 96/129 (74.42%), Postives = 110/129 (85.27%), Query Frame = 0


Query: 1   MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAI 60
           MYSQG+DM P++MLGTR  +SSEGRNCSSGSK K GGQHYE V+VI NEM+  NDQLKAI
Sbjct: 1   MYSQGLDMPPDEMLGTR--QSSEGRNCSSGSKRKHGGQHYEAVDVISNEMEVRNDQLKAI 60

Query: 61  ADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRIIFRSVDDIEGFLSVPTELKLE 120
           A+W KEK ATEVEL  EVVKQLQD  EL++RDR+KLM+IIF  VDDIEGFLS PT+LKLE
Sbjct: 61  ANWSKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQIIFHMVDDIEGFLSCPTKLKLE 120

Query: 121 YCNILLEEN 130
           YC +LLE+N
Sbjct: 121 YCRVLLEDN 127

[Close]

BLAST of PI0003729.1 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 187.2 bits (474), Expect = 9.0e-44
Identity = 93/130 (71.54%), Postives = 112/130 (86.15%), Query Frame = 0


Query: 1   MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAI 60
           MYSQGV MSP++M G RAG++SE RNCSS SK KRG + YE VEVIR+ M+F N+QLKAI
Sbjct: 177 MYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAI 236

Query: 61  ADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRIIFRSVDDIEGFLSVPTELKLE 120
           ADWPKEK A EVE+RA+VVKQLQD P+L+S+DR KLM+I+FRS++ IEGFLS+PTELKLE
Sbjct: 237 ADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLE 296

Query: 121 YCNILLEENV 131
           YCNILL+  V
Sbjct: 297 YCNILLQNIV 306

[Close]

BLAST of PI0003729.1 vs. NCBI nr
Match: KAA0031678.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 184.5 bits (467), Expect = 5.8e-43
Identity = 92/130 (70.77%), Postives = 110/130 (84.62%), Query Frame = 0


Query: 1   MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAI 60
           +YSQGV MS +++ G RAG++SE RN SSGSK KRG +HYE+VEVI +  +F NDQLK I
Sbjct: 134 IYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVISSATEFGNDQLKTI 193

Query: 61  ADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRIIFRSVDDIEGFLSVPTELKLE 120
            DWPKEK ATEVELR EVVKQLQD P+L+S+DR KLM+I+FRSV+ IEGFLS+PT+LKLE
Sbjct: 194 TDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLE 253

Query: 121 YCNILLEENV 131
           YCNILLE NV
Sbjct: 254 YCNILLENNV 263

[Close]

BLAST of PI0003729.1 vs. NCBI nr
Match: KAA0066604.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK14214.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 184.5 bits (467), Expect = 5.8e-43
Identity = 93/127 (73.23%), Postives = 106/127 (83.46%), Query Frame = 0


Query: 1   MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAI 60
           MYSQGV MS N+M G R G++SE RNCSSGSK KRG +HYE VEVIR+ M+F NDQLK I
Sbjct: 1   MYSQGVYMSQNEMFGIRVGQASERRNCSSGSKRKRGSEHYETVEVIRSAMEFGNDQLKTI 60

Query: 61  ADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRIIFRSVDDIEGFLSVPTELKLE 120
           A+WPKEK  TEVELRAEVVKQLQ+  EL SRDR KLM+I+F SV+ IEGFLS+P ELKLE
Sbjct: 61  ANWPKEKRVTEVELRAEVVKQLQNILELPSRDRAKLMQILFHSVEAIEGFLSIPIELKLE 120

Query: 121 YCNILLE 128
           YCNILL+
Sbjct: 121 YCNILLQ 127

The following BLAST results are available for this feature:

BLAST of PI0003729.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0003729.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SQU2	1.0e-45	74.02	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A0A0KFW0	1.0e-45	74.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G116150 PE=4 SV=1	[more]
A0A5A7U0H7	4.4e-44	71.54	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B4L3	4.4e-44	71.54	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]
A0A5D3CT52	2.8e-43	73.23	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0003729.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033290.1	2.1e-45	74.02	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nucleas...	[more]
KAE8646815.1	4.8e-45	74.42	hypothetical protein Csa_005367, partial [Cucumis sativus]	[more]
XP_008441954.1	9.0e-44	71.54	PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret...	[more]
KAA0031678.1	5.8e-43	70.77	retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon p...	[more]
KAA0066604.1	5.8e-43	73.23	retrotransposon protein [Cucumis melo var. makuwa] >TYK14214.1 retrotransposon p...	[more]

BLAST of PI0003729.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0003729	PI0003729	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0003729.1-exon	PI0003729.1-exon-chr03:12272664..12273056	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0003729.1-cds	PI0003729.1-cds-chr03:12272664..12273056	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0003729.1	PI0003729.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding