Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATAGCCAAGGAGTGGATATGTCACCAAATGACATGTTAGGAACACGTGCAGGTCGATCAAGTGAAGGACGAAATTGTTCAAGTGGAAGTAAGTGGAAACGAGGTGGCCAACATTATGAAATAGTGGAGGTGATCAGGAATGAAATGGACTTTGCAAACGATCAATTAAAGGCAATTGCAGATTGGCCAAAAGAAAAGTGTGCAACAGAGGTCGAATTGCGTGCTGAAGTCGTGAAACAATTGCAAGATTTCCCTGAACTACAGAGCCGAGATAGAATAAAGCTTATGCGAATCATATTTCGTAGTGTGGATGACATAGAGGGATTCTTGTCAGTTCCAACAGAACTTAAATTGGAGTATTGCAATATTCTCTTGGAAGAAAATGTTTGA
mRNA sequence
ATGTATAGCCAAGGAGTGGATATGTCACCAAATGACATGTTAGGAACACGTGCAGGTCGATCAAGTGAAGGACGAAATTGTTCAAGTGGAAGTAAGTGGAAACGAGGTGGCCAACATTATGAAATAGTGGAGGTGATCAGGAATGAAATGGACTTTGCAAACGATCAATTAAAGGCAATTGCAGATTGGCCAAAAGAAAAGTGTGCAACAGAGGTCGAATTGCGTGCTGAAGTCGTGAAACAATTGCAAGATTTCCCTGAACTACAGAGCCGAGATAGAATAAAGCTTATGCGAATCATATTTCGTAGTGTGGATGACATAGAGGGATTCTTGTCAGTTCCAACAGAACTTAAATTGGAGTATTGCAATATTCTCTTGGAAGAAAATGTTTGA
Coding sequence (CDS)
ATGTATAGCCAAGGAGTGGATATGTCACCAAATGACATGTTAGGAACACGTGCAGGTCGATCAAGTGAAGGACGAAATTGTTCAAGTGGAAGTAAGTGGAAACGAGGTGGCCAACATTATGAAATAGTGGAGGTGATCAGGAATGAAATGGACTTTGCAAACGATCAATTAAAGGCAATTGCAGATTGGCCAAAAGAAAAGTGTGCAACAGAGGTCGAATTGCGTGCTGAAGTCGTGAAACAATTGCAAGATTTCCCTGAACTACAGAGCCGAGATAGAATAAAGCTTATGCGAATCATATTTCGTAGTGTGGATGACATAGAGGGATTCTTGTCAGTTCCAACAGAACTTAAATTGGAGTATTGCAATATTCTCTTGGAAGAAAATGTTTGA
Protein sequence
MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAIADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRIIFRSVDDIEGFLSVPTELKLEYCNILLEENV
Homology
BLAST of PI0003729 vs. ExPASy TrEMBL
Match:
A0A5A7SQU2 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold472G00070 PE=3 SV=1)
HSP 1 Score: 192.6 bits (488), Expect = 1.0e-45
Identity = 94/127 (74.02%), Postives = 113/127 (88.98%), Query Frame = 0
Query: 1 MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAI 60
MYSQGV MSP++M G RAG++SE +NCSSGSK K+G +HYE VEVI++ ++F NDQLKAI
Sbjct: 370 MYSQGVHMSPDEMFGIRAGQASERKNCSSGSKRKQGSKHYETVEVIKSAIEFGNDQLKAI 429
Query: 61 ADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRIIFRSVDDIEGFLSVPTELKLE 120
A+WPKEK ATEVELRAEV+KQLQD PELQSRDR KL++I+FRSV+ IEGFLS+PTE KLE
Sbjct: 430 ANWPKEKRATEVELRAEVMKQLQDIPELQSRDRAKLIQILFRSVEAIEGFLSIPTERKLE 489
Query: 121 YCNILLE 128
YCNILL+
Sbjct: 490 YCNILLQ 496
BLAST of PI0003729 vs. ExPASy TrEMBL
Match:
A0A0A0KFW0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G116150 PE=4 SV=1)
HSP 1 Score: 192.6 bits (488), Expect = 1.0e-45
Identity = 97/130 (74.62%), Postives = 111/130 (85.38%), Query Frame = 0
Query: 1 MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAI 60
MYSQG+DM P++MLGTR +SSEGRNCSSGSK K GGQHYE V+VI NEM+ NDQLKAI
Sbjct: 1 MYSQGLDMPPDEMLGTR--QSSEGRNCSSGSKRKHGGQHYEAVDVISNEMEVRNDQLKAI 60
Query: 61 ADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRIIFRSVDDIEGFLSVPTELKLE 120
A+W KEK ATEVEL EVVKQLQD EL++RDR+KLM+IIF VDDIEGFLS PT+LKLE
Sbjct: 61 ANWSKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQIIFHMVDDIEGFLSCPTKLKLE 120
Query: 121 YCNILLEENV 131
YC +LLE+NV
Sbjct: 121 YCRVLLEDNV 128
BLAST of PI0003729 vs. ExPASy TrEMBL
Match:
A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)
HSP 1 Score: 187.2 bits (474), Expect = 4.4e-44
Identity = 93/130 (71.54%), Postives = 112/130 (86.15%), Query Frame = 0
Query: 1 MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAI 60
MYSQGV MSP++M G RAG++SE RNCSS SK KRG + YE VEVIR+ M+F N+QLKAI
Sbjct: 177 MYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAI 236
Query: 61 ADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRIIFRSVDDIEGFLSVPTELKLE 120
ADWPKEK A EVE+RA+VVKQLQD P+L+S+DR KLM+I+FRS++ IEGFLS+PTELKLE
Sbjct: 237 ADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLE 296
Query: 121 YCNILLEENV 131
YCNILL+ V
Sbjct: 297 YCNILLQNIV 306
BLAST of PI0003729 vs. ExPASy TrEMBL
Match:
A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)
HSP 1 Score: 187.2 bits (474), Expect = 4.4e-44
Identity = 93/130 (71.54%), Postives = 112/130 (86.15%), Query Frame = 0
Query: 1 MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAI 60
MYSQGV MSP++M G RAG++SE RNCSS SK KRG + YE VEVIR+ M+F N+QLKAI
Sbjct: 177 MYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAI 236
Query: 61 ADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRIIFRSVDDIEGFLSVPTELKLE 120
ADWPKEK A EVE+RA+VVKQLQD P+L+S+DR KLM+I+FRS++ IEGFLS+PTELKLE
Sbjct: 237 ADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLE 296
Query: 121 YCNILLEENV 131
YCNILL+ V
Sbjct: 297 YCNILLQNIV 306
BLAST of PI0003729 vs. ExPASy TrEMBL
Match:
A0A5D3CT52 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5G00400 PE=4 SV=1)
HSP 1 Score: 184.5 bits (467), Expect = 2.8e-43
Identity = 93/127 (73.23%), Postives = 106/127 (83.46%), Query Frame = 0
Query: 1 MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAI 60
MYSQGV MS N+M G R G++SE RNCSSGSK KRG +HYE VEVIR+ M+F NDQLK I
Sbjct: 1 MYSQGVYMSQNEMFGIRVGQASERRNCSSGSKRKRGSEHYETVEVIRSAMEFGNDQLKTI 60
Query: 61 ADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRIIFRSVDDIEGFLSVPTELKLE 120
A+WPKEK TEVELRAEVVKQLQ+ EL SRDR KLM+I+F SV+ IEGFLS+P ELKLE
Sbjct: 61 ANWPKEKRVTEVELRAEVVKQLQNILELPSRDRAKLMQILFHSVEAIEGFLSIPIELKLE 120
Query: 121 YCNILLE 128
YCNILL+
Sbjct: 121 YCNILLQ 127
BLAST of PI0003729 vs. NCBI nr
Match:
KAA0033290.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])
HSP 1 Score: 192.6 bits (488), Expect = 2.1e-45
Identity = 94/127 (74.02%), Postives = 113/127 (88.98%), Query Frame = 0
Query: 1 MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAI 60
MYSQGV MSP++M G RAG++SE +NCSSGSK K+G +HYE VEVI++ ++F NDQLKAI
Sbjct: 370 MYSQGVHMSPDEMFGIRAGQASERKNCSSGSKRKQGSKHYETVEVIKSAIEFGNDQLKAI 429
Query: 61 ADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRIIFRSVDDIEGFLSVPTELKLE 120
A+WPKEK ATEVELRAEV+KQLQD PELQSRDR KL++I+FRSV+ IEGFLS+PTE KLE
Sbjct: 430 ANWPKEKRATEVELRAEVMKQLQDIPELQSRDRAKLIQILFRSVEAIEGFLSIPTERKLE 489
Query: 121 YCNILLE 128
YCNILL+
Sbjct: 490 YCNILLQ 496
BLAST of PI0003729 vs. NCBI nr
Match:
KAE8646815.1 (hypothetical protein Csa_005367, partial [Cucumis sativus])
HSP 1 Score: 191.4 bits (485), Expect = 4.8e-45
Identity = 96/129 (74.42%), Postives = 110/129 (85.27%), Query Frame = 0
Query: 1 MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAI 60
MYSQG+DM P++MLGTR +SSEGRNCSSGSK K GGQHYE V+VI NEM+ NDQLKAI
Sbjct: 1 MYSQGLDMPPDEMLGTR--QSSEGRNCSSGSKRKHGGQHYEAVDVISNEMEVRNDQLKAI 60
Query: 61 ADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRIIFRSVDDIEGFLSVPTELKLE 120
A+W KEK ATEVEL EVVKQLQD EL++RDR+KLM+IIF VDDIEGFLS PT+LKLE
Sbjct: 61 ANWSKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQIIFHMVDDIEGFLSCPTKLKLE 120
Query: 121 YCNILLEEN 130
YC +LLE+N
Sbjct: 121 YCRVLLEDN 127
BLAST of PI0003729 vs. NCBI nr
Match:
XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 187.2 bits (474), Expect = 9.0e-44
Identity = 93/130 (71.54%), Postives = 112/130 (86.15%), Query Frame = 0
Query: 1 MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAI 60
MYSQGV MSP++M G RAG++SE RNCSS SK KRG + YE VEVIR+ M+F N+QLKAI
Sbjct: 177 MYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAI 236
Query: 61 ADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRIIFRSVDDIEGFLSVPTELKLE 120
ADWPKEK A EVE+RA+VVKQLQD P+L+S+DR KLM+I+FRS++ IEGFLS+PTELKLE
Sbjct: 237 ADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLE 296
Query: 121 YCNILLEENV 131
YCNILL+ V
Sbjct: 297 YCNILLQNIV 306
BLAST of PI0003729 vs. NCBI nr
Match:
KAA0031678.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 184.5 bits (467), Expect = 5.8e-43
Identity = 92/130 (70.77%), Postives = 110/130 (84.62%), Query Frame = 0
Query: 1 MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAI 60
+YSQGV MS +++ G RAG++SE RN SSGSK KRG +HYE+VEVI + +F NDQLK I
Sbjct: 134 IYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVISSATEFGNDQLKTI 193
Query: 61 ADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRIIFRSVDDIEGFLSVPTELKLE 120
DWPKEK ATEVELR EVVKQLQD P+L+S+DR KLM+I+FRSV+ IEGFLS+PT+LKLE
Sbjct: 194 TDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLE 253
Query: 121 YCNILLEENV 131
YCNILLE NV
Sbjct: 254 YCNILLENNV 263
BLAST of PI0003729 vs. NCBI nr
Match:
KAA0066604.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK14214.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 184.5 bits (467), Expect = 5.8e-43
Identity = 93/127 (73.23%), Postives = 106/127 (83.46%), Query Frame = 0
Query: 1 MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAI 60
MYSQGV MS N+M G R G++SE RNCSSGSK KRG +HYE VEVIR+ M+F NDQLK I
Sbjct: 1 MYSQGVYMSQNEMFGIRVGQASERRNCSSGSKRKRGSEHYETVEVIRSAMEFGNDQLKTI 60
Query: 61 ADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRIIFRSVDDIEGFLSVPTELKLE 120
A+WPKEK TEVELRAEVVKQLQ+ EL SRDR KLM+I+F SV+ IEGFLS+P ELKLE
Sbjct: 61 ANWPKEKRVTEVELRAEVVKQLQNILELPSRDRAKLMQILFHSVEAIEGFLSIPIELKLE 120
Query: 121 YCNILLE 128
YCNILL+
Sbjct: 121 YCNILLQ 127
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7SQU2 | 1.0e-45 | 74.02 | Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... | [more] |
A0A0A0KFW0 | 1.0e-45 | 74.62 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G116150 PE=4 SV=1 | [more] |
A0A5A7U0H7 | 4.4e-44 | 71.54 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S3B4L3 | 4.4e-44 | 71.54 | uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... | [more] |
A0A5D3CT52 | 2.8e-43 | 73.23 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
KAA0033290.1 | 2.1e-45 | 74.02 | putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nucleas... | [more] |
KAE8646815.1 | 4.8e-45 | 74.42 | hypothetical protein Csa_005367, partial [Cucumis sativus] | [more] |
XP_008441954.1 | 9.0e-44 | 71.54 | PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret... | [more] |
KAA0031678.1 | 5.8e-43 | 70.77 | retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon p... | [more] |
KAA0066604.1 | 5.8e-43 | 73.23 | retrotransposon protein [Cucumis melo var. makuwa] >TYK14214.1 retrotransposon p... | [more] |
Match Name | E-value | Identity | Description | |