Moc09g05590.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g05590.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	H/ACA ribonucleoprotein complex non-core subunit NAF1
Location	chr9: 4276812 .. 4278031 (-)
Sequence length	750
RNA-Seq Expression	Moc09g05590.1
Synteny	Moc09g05590.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTTTCTTCAAGTGTACTATTTATTCTTGACAATAACCTAATCAGATCACATCTCTTGAGCCTCGATTGGTGTGACTGCACTTACCCTAAAATTGTTTCTTGTCAGGTCTGAGCCAGTTGTGCAGGCGAGTGTTGAGGCTTCTGATAAGTCTAGGGATTTGAATTACATAATCGAGGAAGGGATATCAAAGGTTAGTTTGGTTACTGGAAGTGGAAGCACCGGGAACATTGATTTAGAGTGTCAAAAGGATGACATTGAAAGTGATGTTGAGTCTGAGGGCACAAGTTCAGCTACAACATCCAGTAGCAGTAGCCATGGCAGAGACAGCAATGATGAAAAAGATGACGAGGAAGAAAATGCATCATCTTCTAGTAGTGGCAACAGTAGTTGCGATGAAGAAGAAGAGGAGAATGAGTTCACTGTGAAAGCAGAGGGACGTGGAGAAATCGGTGAACTCGAAGAAGGTGAGATAAGGGACATTGACATTGAAGACGAAGAGGCTTCTGCAGATCAAATGGTTGCGTGGGATGGTGGTGATGGTGAGGACCTGGACATTGATGATGATGAAGAGGCTGGTGCTGTAGGAGGGCCAATTAGTTCTAAAAATGAGCTTAAGGTCCGTTTTTTTGTTTTCATCCTTGATGCTTGCTGGTAGTCTTTTGCACTTTGAGTAAACGGATGGAGGCTGGATTGGATGGTTGATTAGTAATCAGTATTATTGTATTGCTTCATTTTTGGCTTGTTTGCAGGTTCTTCCTCCAGTTCCTCAGGTGTATGCCACACTACAGCCACACCACCAGATTCTTCCTGTTGGAGTTGTTTTGTCAGTAAGCTCCTTCATTTTATTAGAATCATACGACAAATAATGCTCCAATTCTTCTATGTCTGCCCATTACATGGTTTTCCTTGCTCTTAATGAAGCTAAATAATCTATAAGAAGCGGGTTTTTTTAGATAAATATTAAATTCTATGTTCTGTTTCTACTTGTCAGATAATTGGCAGTCAAGTCATTGTAGAGGGTGTTGAGAAGCACAATCCTCTTAATGAAGGCTCTATCCTCTGGATAACTGAACTTAGATCTCCATTGGGGTTGGTAGATGAAATTTTTGGACCAGTAAAAAATCCTTATTATTCCGTAAGATACAATTCTGAAAGTGAAGTTCCTACAGGGATTTGTGGAGGCACTCACGTCTCTTTTGTTCTGGAGTTTGCTGA

mRNA sequence

ATGCTCTTTCTTCAAGTGTCTGAGCCAGTTGTGCAGGCGAGTGTTGAGGCTTCTGATAAGTCTAGGGATTTGAATTACATAATCGAGGAAGGGATATCAAAGGTTAGTTTGGTTACTGGAAGTGGAAGCACCGGGAACATTGATTTAGAGTGTCAAAAGGATGACATTGAAAGTGATGTTGAGTCTGAGGGCACAAGTTCAGCTACAACATCCAGTAGCAGTAGCCATGGCAGAGACAGCAATGATGAAAAAGATGACGAGGAAGAAAATGCATCATCTTCTAGTAGTGGCAACAGTAGTTGCGATGAAGAAGAAGAGGAGAATGAGTTCACTGTGAAAGCAGAGGGACGTGGAGAAATCGGTGAACTCGAAGAAGGTGAGATAAGGGACATTGACATTGAAGACGAAGAGGCTTCTGCAGATCAAATGGTTGCGTGGGATGGTGGTGATGGTGAGGACCTGGACATTGATGATGATGAAGAGGCTGGTGCTGTAGGAGGGCCAATTAGTTCTAAAAATGAGCTTAAGGTTCTTCCTCCAGTTCCTCAGGTGTATGCCACACTACAGCCACACCACCAGATTCTTCCTGTTGGAGTTGTTTTGTCAATAATTGGCAGTCAAGTCATTGTAGAGGGTGTTGAGAAGCACAATCCTCTTAATGAAGGCTCTATCCTCTGGATAACTGAACTTAGATCTCCATTGGGGGATTTGTGGAGGCACTCACGTCTCTTTTGTTCTGGAGTTTGCTGA

Coding sequence (CDS)

ATGCTCTTTCTTCAAGTGTCTGAGCCAGTTGTGCAGGCGAGTGTTGAGGCTTCTGATAAGTCTAGGGATTTGAATTACATAATCGAGGAAGGGATATCAAAGGTTAGTTTGGTTACTGGAAGTGGAAGCACCGGGAACATTGATTTAGAGTGTCAAAAGGATGACATTGAAAGTGATGTTGAGTCTGAGGGCACAAGTTCAGCTACAACATCCAGTAGCAGTAGCCATGGCAGAGACAGCAATGATGAAAAAGATGACGAGGAAGAAAATGCATCATCTTCTAGTAGTGGCAACAGTAGTTGCGATGAAGAAGAAGAGGAGAATGAGTTCACTGTGAAAGCAGAGGGACGTGGAGAAATCGGTGAACTCGAAGAAGGTGAGATAAGGGACATTGACATTGAAGACGAAGAGGCTTCTGCAGATCAAATGGTTGCGTGGGATGGTGGTGATGGTGAGGACCTGGACATTGATGATGATGAAGAGGCTGGTGCTGTAGGAGGGCCAATTAGTTCTAAAAATGAGCTTAAGGTTCTTCCTCCAGTTCCTCAGGTGTATGCCACACTACAGCCACACCACCAGATTCTTCCTGTTGGAGTTGTTTTGTCAATAATTGGCAGTCAAGTCATTGTAGAGGGTGTTGAGAAGCACAATCCTCTTAATGAAGGCTCTATCCTCTGGATAACTGAACTTAGATCTCCATTGGGGGATTTGTGGAGGCACTCACGTCTCTTTTGTTCTGGAGTTTGCTGA

Protein sequence

MLFLQVSEPVVQASVEASDKSRDLNYIIEEGISKVSLVTGSGSTGNIDLECQKDDIESDVESEGTSSATTSSSSSHGRDSNDEKDDEEENASSSSSGNSSCDEEEEENEFTVKAEGRGEIGELEEGEIRDIDIEDEEASADQMVAWDGGDGEDLDIDDDEEAGAVGGPISSKNELKVLPPVPQVYATLQPHHQILPVGVVLSIIGSQVIVEGVEKHNPLNEGSILWITELRSPLGDLWRHSRLFCSGVC

Homology

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BLAST of Moc09g05590.1 vs. NCBI nr
Match: XP_022150383.1 (H/ACA ribonucleoprotein complex non-core subunit NAF1-like [Momordica charantia])

HSP 1 Score: 367.9 bits (943), Expect = 7.1e-98
Identity = 203/230 (88.26%), Postives = 215/230 (93.48%), Query Frame = 0


Query: 6   VSEPVVQASVEASDKSRDLNYIIEEGISKVSLVTGSGSTGNIDLECQKDDIESDVESEGT 65
           VS PVVQAS+EASDKSRDLN IIEEG+SKVSLVTGSGSTGNIDLEC+KD+ ESDVESEGT
Sbjct: 98  VSVPVVQASIEASDKSRDLNGIIEEGMSKVSLVTGSGSTGNIDLECRKDESESDVESEGT 157

Query: 66  SSATTSSSSSHGRDSNDEKDDEEENASSSSSGNSSCDEEEEENEFTVKAEGRGEIGELEE 125
           SSATTSSSSSHGR  NDEKD+EEEN+SSSSS +SSCD+EEEEN+FT+KAEG GEIGELEE
Sbjct: 158 SSATTSSSSSHGRGRNDEKDEEEENSSSSSSDDSSCDDEEEENKFTMKAEGHGEIGELEE 217

Query: 126 GEIRDIDIEDEEASADQMVAWDGGDGEDLDIDDDEEAGAVGGPISSKNELKVLPPVPQVY 185
           GEIRD++ EDEEAS DQMVAWD GDG D DIDDDEE G  GGPISSKNELKVLPPVPQVY
Sbjct: 218 GEIRDVEDEDEEASTDQMVAWD-GDGGDPDIDDDEEVGVEGGPISSKNELKVLPPVPQVY 277

Query: 186 ATLQPHHQILPVGVVLSIIGSQVIVEGVEKHNPLNEGSILWITELRSPLG 236
           ATLQPHHQILPVGVVLSIIGSQVIVEGVEKHNPLNEGSILWITELRSPLG
Sbjct: 278 ATLQPHHQILPVGVVLSIIGSQVIVEGVEKHNPLNEGSILWITELRSPLG 326

[Close]

BLAST of Moc09g05590.1 vs. NCBI nr
Match: XP_022149469.1 (H/ACA ribonucleoprotein complex non-core subunit NAF1-like [Momordica charantia] >XP_022149470.1 H/ACA ribonucleoprotein complex non-core subunit NAF1-like [Momordica charantia])

HSP 1 Score: 360.9 bits (925), Expect = 8.7e-96
Identity = 199/230 (86.52%), Postives = 213/230 (92.61%), Query Frame = 0


Query: 6   VSEPVVQASVEASDKSRDLNYIIEEGISKVSLVTGSGSTGNIDLECQKDDIESDVESEGT 65
           VS PVVQAS+EASDKSRDLN IIEEG+SKVSLVTGSGSTGNIDLEC+KD+ ESDVESEGT
Sbjct: 98  VSVPVVQASIEASDKSRDLNGIIEEGMSKVSLVTGSGSTGNIDLECRKDESESDVESEGT 157

Query: 66  SSATTSSSSSHGRDSNDEKDDEEENASSSSSGNSSCDEEEEENEFTVKAEGRGEIGELEE 125
           SSATTSSSSSHGR  NDEKD+EEEN+SSSSS +SSCD+EEEEN+FT+KAEG GEIGELEE
Sbjct: 158 SSATTSSSSSHGRGRNDEKDEEEENSSSSSSDDSSCDDEEEENKFTMKAEGHGEIGELEE 217

Query: 126 GEIRDIDIEDEEASADQMVAWDGGDGEDLDIDDDEEAGAVGGPISSKNELKVLPPVPQVY 185
           GEIRD++ EDEEAS DQMVAWD GDG D DIDDDEE G  GGPISSKNELKVLPPVPQVY
Sbjct: 218 GEIRDVEDEDEEASTDQMVAWD-GDGGDPDIDDDEEVGVEGGPISSKNELKVLPPVPQVY 277

Query: 186 ATLQPHHQILPVGVVLSIIGSQVIVEGVEKHNPLNEGSILWITELRSPLG 236
           ATLQP HQI+PVGVVLSIIG+QVIVEGVEKHNPLNEGSILWITE RSPLG
Sbjct: 278 ATLQPQHQIIPVGVVLSIIGNQVIVEGVEKHNPLNEGSILWITETRSPLG 326

[Close]

BLAST of Moc09g05590.1 vs. NCBI nr
Match: KAG6604811.1 (H/ACA ribonucleoprotein complex non-core subunit NAF1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 283.9 bits (725), Expect = 1.4e-72
Identity = 164/228 (71.93%), Postives = 191/228 (83.77%), Query Frame = 0


Query: 8   EPVVQASVEASDKSRDLNYIIEEGISKVSLVTGSGSTGNIDLECQKDDIESDVESEGTSS 67
           +P+ QA  EA  KS DLN IIEEG+SKVSLV   GSTGNI+ + ++DD ESDVESEGTSS
Sbjct: 97  QPIAQAEGEACGKSTDLNCIIEEGMSKVSLVIDGGSTGNIESDSREDDDESDVESEGTSS 156

Query: 68  ATTSSSSSHGRDSNDEKDDEEENASSSSSGNSSCDEEEEENEFTVKAEGRGEIGELEEGE 127
           A+TSS SS    S+D++ DEEE++SSSSSG+SSCD++ E  E +VKA+   EIGELEEGE
Sbjct: 157 ASTSSDSSSSSGSSDDEKDEEESSSSSSSGDSSCDDDVETEENSVKADVHTEIGELEEGE 216

Query: 128 IRDIDIEDEEASADQMVAWDGGDGEDLDIDDDEEAGAVGGPISSKNELKVLPPVPQVYAT 187
           I D D ED+EASAD MVAWD GDGE+L  D+++EAG  GGPISSKNELKVLPPVPQV+AT
Sbjct: 217 ISDADNEDKEASADDMVAWD-GDGEEL--DEEDEAGPEGGPISSKNELKVLPPVPQVHAT 276

Query: 188 LQPHHQILPVGVVLSIIGSQVIVEGVEKHNPLNEGSILWITELRSPLG 236
           LQPHHQ++PVGVVLSIIGSQVIVEGVEKHNPLNEGSILW+T  RSPLG
Sbjct: 277 LQPHHQMVPVGVVLSIIGSQVIVEGVEKHNPLNEGSILWLTVARSPLG 321

[Close]

BLAST of Moc09g05590.1 vs. NCBI nr
Match: XP_023533326.1 (H/ACA ribonucleoprotein complex non-core subunit NAF1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 283.9 bits (725), Expect = 1.4e-72
Identity = 164/228 (71.93%), Postives = 191/228 (83.77%), Query Frame = 0


Query: 8   EPVVQASVEASDKSRDLNYIIEEGISKVSLVTGSGSTGNIDLECQKDDIESDVESEGTSS 67
           +P+ QA  EA  KS DLN IIEEG+SKVSLV   GSTGNI+ + ++DD +SDVESEGTSS
Sbjct: 95  QPIAQAEGEACGKSTDLNCIIEEGMSKVSLVIDGGSTGNIESDSREDDDDSDVESEGTSS 154

Query: 68  ATTSSSSSHGRDSNDEKDDEEENASSSSSGNSSCDEEEEENEFTVKAEGRGEIGELEEGE 127
           A+TSS SS    S+D++ DEEE++SSSSSG+SSCD++ E  E +VKA+   EIGELEEGE
Sbjct: 155 ASTSSDSSSSSGSSDDEKDEEESSSSSSSGDSSCDDDVETEENSVKADVHTEIGELEEGE 214

Query: 128 IRDIDIEDEEASADQMVAWDGGDGEDLDIDDDEEAGAVGGPISSKNELKVLPPVPQVYAT 187
           I D D ED+EASAD MVAWD GDGE+L  D++EEAG  GGPISSKNELKVLPPVPQV+AT
Sbjct: 215 ISDADNEDKEASADDMVAWD-GDGEEL--DEEEEAGPEGGPISSKNELKVLPPVPQVHAT 274

Query: 188 LQPHHQILPVGVVLSIIGSQVIVEGVEKHNPLNEGSILWITELRSPLG 236
           LQPHHQ++PVGVVLSIIGSQVIVEGVEKHNPLNEGSILW+T  RSPLG
Sbjct: 275 LQPHHQMVPVGVVLSIIGSQVIVEGVEKHNPLNEGSILWLTVARSPLG 319

[Close]

BLAST of Moc09g05590.1 vs. NCBI nr
Match: KAG7034929.1 (H/ACA ribonucleoprotein complex non-core subunit NAF1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 283.9 bits (725), Expect = 1.4e-72
Identity = 164/228 (71.93%), Postives = 191/228 (83.77%), Query Frame = 0


Query: 8   EPVVQASVEASDKSRDLNYIIEEGISKVSLVTGSGSTGNIDLECQKDDIESDVESEGTSS 67
           +P+ QA  EA  KS DLN IIEEG+SKVSLV   GSTGNI+ + ++DD ESDVESEGTSS
Sbjct: 97  QPIAQAEGEACGKSTDLNCIIEEGMSKVSLVIDGGSTGNIESDSREDDDESDVESEGTSS 156

Query: 68  ATTSSSSSHGRDSNDEKDDEEENASSSSSGNSSCDEEEEENEFTVKAEGRGEIGELEEGE 127
           A+TSS SS    S+D++ DEEE++SSSSSG+SSCD++ E  E +VKA+   EIGELEEGE
Sbjct: 157 ASTSSDSSSSSGSSDDEKDEEESSSSSSSGDSSCDDDVETEENSVKADVHTEIGELEEGE 216

Query: 128 IRDIDIEDEEASADQMVAWDGGDGEDLDIDDDEEAGAVGGPISSKNELKVLPPVPQVYAT 187
           I D D ED+EASAD MVAWD GDGE+L  D+++EAG  GGPISSKNELKVLPPVPQV+AT
Sbjct: 217 ISDADNEDKEASADDMVAWD-GDGEEL--DEEDEAGPEGGPISSKNELKVLPPVPQVHAT 276

Query: 188 LQPHHQILPVGVVLSIIGSQVIVEGVEKHNPLNEGSILWITELRSPLG 236
           LQPHHQ++PVGVVLSIIGSQVIVEGVEKHNPLNEGSILW+T  RSPLG
Sbjct: 277 LQPHHQMVPVGVVLSIIGSQVIVEGVEKHNPLNEGSILWLTVARSPLG 321

[Close]

BLAST of Moc09g05590.1 vs. ExPASy TrEMBL
Match: A0A6J1D9A9 (H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Momordica charantia OX=3673 GN=LOC111018557 PE=3 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 3.5e-98
Identity = 203/230 (88.26%), Postives = 215/230 (93.48%), Query Frame = 0


Query: 6   VSEPVVQASVEASDKSRDLNYIIEEGISKVSLVTGSGSTGNIDLECQKDDIESDVESEGT 65
           VS PVVQAS+EASDKSRDLN IIEEG+SKVSLVTGSGSTGNIDLEC+KD+ ESDVESEGT
Sbjct: 98  VSVPVVQASIEASDKSRDLNGIIEEGMSKVSLVTGSGSTGNIDLECRKDESESDVESEGT 157

Query: 66  SSATTSSSSSHGRDSNDEKDDEEENASSSSSGNSSCDEEEEENEFTVKAEGRGEIGELEE 125
           SSATTSSSSSHGR  NDEKD+EEEN+SSSSS +SSCD+EEEEN+FT+KAEG GEIGELEE
Sbjct: 158 SSATTSSSSSHGRGRNDEKDEEEENSSSSSSDDSSCDDEEEENKFTMKAEGHGEIGELEE 217

Query: 126 GEIRDIDIEDEEASADQMVAWDGGDGEDLDIDDDEEAGAVGGPISSKNELKVLPPVPQVY 185
           GEIRD++ EDEEAS DQMVAWD GDG D DIDDDEE G  GGPISSKNELKVLPPVPQVY
Sbjct: 218 GEIRDVEDEDEEASTDQMVAWD-GDGGDPDIDDDEEVGVEGGPISSKNELKVLPPVPQVY 277

Query: 186 ATLQPHHQILPVGVVLSIIGSQVIVEGVEKHNPLNEGSILWITELRSPLG 236
           ATLQPHHQILPVGVVLSIIGSQVIVEGVEKHNPLNEGSILWITELRSPLG
Sbjct: 278 ATLQPHHQILPVGVVLSIIGSQVIVEGVEKHNPLNEGSILWITELRSPLG 326

[Close]

BLAST of Moc09g05590.1 vs. ExPASy TrEMBL
Match: A0A6J1D5T5 (H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Momordica charantia OX=3673 GN=LOC111017890 PE=3 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 4.2e-96
Identity = 199/230 (86.52%), Postives = 213/230 (92.61%), Query Frame = 0


Query: 6   VSEPVVQASVEASDKSRDLNYIIEEGISKVSLVTGSGSTGNIDLECQKDDIESDVESEGT 65
           VS PVVQAS+EASDKSRDLN IIEEG+SKVSLVTGSGSTGNIDLEC+KD+ ESDVESEGT
Sbjct: 98  VSVPVVQASIEASDKSRDLNGIIEEGMSKVSLVTGSGSTGNIDLECRKDESESDVESEGT 157

Query: 66  SSATTSSSSSHGRDSNDEKDDEEENASSSSSGNSSCDEEEEENEFTVKAEGRGEIGELEE 125
           SSATTSSSSSHGR  NDEKD+EEEN+SSSSS +SSCD+EEEEN+FT+KAEG GEIGELEE
Sbjct: 158 SSATTSSSSSHGRGRNDEKDEEEENSSSSSSDDSSCDDEEEENKFTMKAEGHGEIGELEE 217

Query: 126 GEIRDIDIEDEEASADQMVAWDGGDGEDLDIDDDEEAGAVGGPISSKNELKVLPPVPQVY 185
           GEIRD++ EDEEAS DQMVAWD GDG D DIDDDEE G  GGPISSKNELKVLPPVPQVY
Sbjct: 218 GEIRDVEDEDEEASTDQMVAWD-GDGGDPDIDDDEEVGVEGGPISSKNELKVLPPVPQVY 277

Query: 186 ATLQPHHQILPVGVVLSIIGSQVIVEGVEKHNPLNEGSILWITELRSPLG 236
           ATLQP HQI+PVGVVLSIIG+QVIVEGVEKHNPLNEGSILWITE RSPLG
Sbjct: 278 ATLQPQHQIIPVGVVLSIIGNQVIVEGVEKHNPLNEGSILWITETRSPLG 326

[Close]

BLAST of Moc09g05590.1 vs. ExPASy TrEMBL
Match: A0A6J1G6M0 (H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Cucurbita moschata OX=3662 GN=LOC111451307 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 1.5e-72
Identity = 164/228 (71.93%), Postives = 190/228 (83.33%), Query Frame = 0


Query: 8   EPVVQASVEASDKSRDLNYIIEEGISKVSLVTGSGSTGNIDLECQKDDIESDVESEGTSS 67
           +P  QA  EA  KS DLN IIEEG+SKVSLV   GSTGNI+ + ++DD ESDVESEGTSS
Sbjct: 97  QPTAQAEGEACGKSTDLNCIIEEGMSKVSLVIDGGSTGNIESDSREDDDESDVESEGTSS 156

Query: 68  ATTSSSSSHGRDSNDEKDDEEENASSSSSGNSSCDEEEEENEFTVKAEGRGEIGELEEGE 127
           A+TSS SS    S+D++ DEEE++SSSSSG+SSCD++ E  E +VKA+   EIGELEEGE
Sbjct: 157 ASTSSDSSSSSGSSDDEKDEEESSSSSSSGDSSCDDDVETEENSVKADVHTEIGELEEGE 216

Query: 128 IRDIDIEDEEASADQMVAWDGGDGEDLDIDDDEEAGAVGGPISSKNELKVLPPVPQVYAT 187
           I D D ED+EASAD MVAWD GDGE+L  D+++EAG  GGPISSKNELKVLPPVPQV+AT
Sbjct: 217 ISDADNEDKEASADDMVAWD-GDGEEL--DEEDEAGPEGGPISSKNELKVLPPVPQVHAT 276

Query: 188 LQPHHQILPVGVVLSIIGSQVIVEGVEKHNPLNEGSILWITELRSPLG 236
           LQPHHQ++PVGVVLSIIGSQVIVEGVEKHNPLNEGSILW+T  RSPLG
Sbjct: 277 LQPHHQMVPVGVVLSIIGSQVIVEGVEKHNPLNEGSILWLTVARSPLG 321

[Close]

BLAST of Moc09g05590.1 vs. ExPASy TrEMBL
Match: A0A6J1I505 (H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Cucurbita maxima OX=3661 GN=LOC111469679 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 2.1e-71
Identity = 165/229 (72.05%), Postives = 190/229 (82.97%), Query Frame = 0


Query: 8   EPVVQASVEASDKSRDLNYIIEEGISKVSLVTGSGSTGNIDLECQKDDIESDVESEGTSS 67
           +P+ QA  EA  KS DLN IIEEG+SKVSLV   GSTGNI+ + ++DD ESD ESEGTSS
Sbjct: 95  QPIAQAGGEACAKSTDLNCIIEEGMSKVSLVIDGGSTGNIESDSREDDDESDAESEGTSS 154

Query: 68  ATTSS-SSSHGRDSNDEKDDEEENASSSSSGNSSCDEEEEENEFTVKAEGRGEIGELEEG 127
           A+TSS SSS    S+D KDD+EE++SSSSSG+SSC ++ E  E +VKA+   EIGELEEG
Sbjct: 155 ASTSSDSSSSSGSSDDGKDDDEESSSSSSSGDSSCHDDVETKENSVKADVHTEIGELEEG 214

Query: 128 EIRDIDIEDEEASADQMVAWDGGDGEDLDIDDDEEAGAVGGPISSKNELKVLPPVPQVYA 187
           EI D D ED+EASAD MVAWD GDGE+L  D++EEAG  GGPISSKNELKVLPPVPQV+A
Sbjct: 215 EISDADNEDKEASADDMVAWD-GDGEEL--DEEEEAGPEGGPISSKNELKVLPPVPQVHA 274

Query: 188 TLQPHHQILPVGVVLSIIGSQVIVEGVEKHNPLNEGSILWITELRSPLG 236
           TLQPHHQ++PVGVVLSIIGSQVIVEGVEKHNPLNEGSILW+T  RSPLG
Sbjct: 275 TLQPHHQMVPVGVVLSIIGSQVIVEGVEKHNPLNEGSILWLTVARSPLG 320

[Close]

BLAST of Moc09g05590.1 vs. ExPASy TrEMBL
Match: A0A5A7TE26 (H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold234G00720 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 6.8e-70
Identity = 162/231 (70.13%), Postives = 189/231 (81.82%), Query Frame = 0


Query: 11  VQASVEASDKSRDLNYIIEEGISKVSLVTGSGSTGNIDLECQKDDIESDVESEGTSSATT 70
           +QAS EA   S DLN IIEEG+SKVSLV   G T  ++LE + DD ESDVESEGTSS +T
Sbjct: 106 MQASGEACSNSTDLNSIIEEGMSKVSLVLDGGCTSKVELESEVDDGESDVESEGTSSVST 165

Query: 71  SSSSSHGRDSNDEKDDEEENASSSSSGNSSCDEEEEENEFTVKAEGRGEIGELEEGEIRD 130
           SSSSS G  S++E ++EEE++SSSSSG    D ++EE E+ V+AEG+ EIGELEEGEIRD
Sbjct: 166 SSSSSSGGSSDNEVEEEEESSSSSSSG----DYDDEEEEYIVEAEGKREIGELEEGEIRD 225

Query: 131 IDIEDEEASADQMVAWDGGDGEDLDIDD------DEEAGAVGGPISSKNELKVLPPVPQV 190
            D EDEEASAD MVAWD  DGEDLD DD      +EEAGA GGPI+SKNELKVLPPVPQV
Sbjct: 226 ADDEDEEASADDMVAWD-NDGEDLDGDDEDLDGEEEEAGAEGGPITSKNELKVLPPVPQV 285

Query: 191 YATLQPHHQILPVGVVLSIIGSQVIVEGVEKHNPLNEGSILWITELRSPLG 236
           +ATLQPHH++LPVGVVLS++G+QVIVEG+EKHNPL+EGSILWITE RSPLG
Sbjct: 286 HATLQPHHKMLPVGVVLSMLGNQVIVEGIEKHNPLSEGSILWITEARSPLG 331

[Close]

BLAST of Moc09g05590.1 vs. TAIR 10
Match: AT1G03530.1 (nuclear assembly factor 1 )

HSP 1 Score: 135.2 bits (339), Expect = 7.3e-32
Identity = 104/258 (40.31%), Postives = 143/258 (55.43%), Query Frame = 0


Query: 7   SEPVVQASVEASDKSRDLN------------YIIEEGISKVSLVTGSGSTGNIDLECQKD 66
           +EPVV +    +  + DL+              IE G+ KVSL        + + + + D
Sbjct: 185 TEPVVVSDASVACPTMDLDESGLKKTDEGLACSIEVGLEKVSLAVDDDEKSD-EAKGEMD 244

Query: 67  DIESDVESEGTSSATTSSSSSHGRDSNDEKDDEEENASSSSSGNSSCDEEEEENEFTVKA 126
             ES+ E+  +S++++ SSSS   +S++++ D+EEN            ++EE+ E  V  
Sbjct: 245 SAESESETSSSSASSSDSSSSEEEESDEDESDKEEN------------KKEEKFEHMVVG 304

Query: 127 EGRGEIGELEEGEIR-------DIDIEDEEASAD----------QMVAWDGGDGEDLDID 186
           +     GELEEGEI        D DIEDE+   D          +MVAW   + +DL + 
Sbjct: 305 KEDDLAGELEEGEIENLDEENGDDDIEDEDDDDDDDDDDDDDVNEMVAWSNDEDDDLGLQ 364

Query: 187 DDEEAGAVGGPISSKNELKVLPPVPQVYATLQPHHQILPVGVVLSIIGSQVIVEGVEKHN 236
             E       PI SKNELK LPPVP V  TL+PHH  LPVGVVLS++ +QVIVEG+EKH+
Sbjct: 365 TKE-------PIRSKNELKELPPVPPVDVTLEPHHATLPVGVVLSVMSAQVIVEGMEKHS 422

The following BLAST results are available for this feature:

BLAST of Moc09g05590.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150383.1	7.1e-98	88.26	H/ACA ribonucleoprotein complex non-core subunit NAF1-like [Momordica charantia]	[more]
XP_022149469.1	8.7e-96	86.52	H/ACA ribonucleoprotein complex non-core subunit NAF1-like [Momordica charantia]...	[more]
KAG6604811.1	1.4e-72	71.93	H/ACA ribonucleoprotein complex non-core subunit NAF1, partial [Cucurbita argyro...	[more]
XP_023533326.1	1.4e-72	71.93	H/ACA ribonucleoprotein complex non-core subunit NAF1 [Cucurbita pepo subsp. pep...	[more]
KAG7034929.1	1.4e-72	71.93	H/ACA ribonucleoprotein complex non-core subunit NAF1, partial [Cucurbita argyro...	[more]

BLAST of Moc09g05590.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g05590.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D9A9	3.5e-98	88.26	H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Momordica charantia OX=...	[more]
A0A6J1D5T5	4.2e-96	86.52	H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Momordica charantia OX=...	[more]
A0A6J1G6M0	1.5e-72	71.93	H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Cucurbita moschata OX=3...	[more]
A0A6J1I505	2.1e-71	72.05	H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Cucurbita maxima OX=366...	[more]
A0A5A7TE26	6.8e-70	70.13	H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Cucumis melo var. makuw...	[more]

BLAST of Moc09g05590.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03530.1	7.3e-32	40.31	nuclear assembly factor 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038664	H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain	GENE3D	2.40.10.230	Probable tRNA pseudouridine synthase domain	coord: 166..238 e-value: 2.3E-12 score: 48.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..76
IPR040309	H/ACA ribonucleoprotein complex non-core subunit Naf1	PANTHER	PTHR31633	H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1	coord: 14..235

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc09g05590	Moc09g05590	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc09g05590.1.exon5	Moc09g05590.1.exon5	exon
Moc09g05590.1.exon4	Moc09g05590.1.exon4	exon
Moc09g05590.1.exon3	Moc09g05590.1.exon3	exon
Moc09g05590.1.exon2	Moc09g05590.1.exon2	exon
Moc09g05590.1.exon1	Moc09g05590.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc09g05590.1	cds.Moc09g05590.1_5	CDS
cds.Moc09g05590.1	cds.Moc09g05590.1_4	CDS
cds.Moc09g05590.1	cds.Moc09g05590.1_3	CDS
cds.Moc09g05590.1	cds.Moc09g05590.1_2	CDS
cds.Moc09g05590.1	cds.Moc09g05590.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc09g05590.1	Moc09g05590.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000493	box H/ACA snoRNP assembly
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0001522	pseudouridine synthesis
cellular_component	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding