Moc06g06490.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview
NameMoc06g06490.1
TypemRNA
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein LOC111025272
Locationchr6: 4716122 .. 4719523 (+)
Sequence length1101
RNA-Seq ExpressionMoc06g06490.1
SyntenyMoc06g06490.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCAGCGCTGGAAAATGCAAAGTCATTCCATTTCCATTAGCGTTACGCGACGCGTCGGGGGTTTGGCCAGGCGTTGGCCCGAATTTGGCGGCAAAATGTATACAACTACAATTTACAAACGCATTTTTCAATTTTTATAATTTTATGGGATTTGTAGATTGATGAGCTATTTTAAGATCCTAATTACATAAAAGGATGGAATGTATAGAATTTACACATTTGTCATGTATCAACCTTATTTATGAGGGTATCCATCACATAAATTACTTAAATACCCTAATGTATCTACAAATTAATTTTTAATTCATTTAAAGATGCAAAATTGATTAATTGGAAGGTTATAATTTGGATCTCATAATTTAAGGTTAATGATACTTTCCAAAATAGATTAAAAATCAAAAAAATTAAAAAGAAAACCCTAAATTAACCAAATTTGAAAACCCCCCAAAAATCCCCAAATCCCGTCTAAAACGTCCAACGATTTTTTTTCTCCGCATTTTACGCTTCCTCCGTCTGCGGTAGTCTATGGGTTGTGTAACCGTTCGTCGGTCGTCGTCTTCCTTGTCCGCCGTGACTGTTCCGGTCTGACTTCGCCGCGTTCGTCGGAAGCTGTATCGGTAAGTTTCCAGCCGTCGTCTTTGCTTTGTCTGCTTCAATTTCCGTCTGCACAATTCGTCTGTGTACTTCCGTCATTGTTGAAATGCTTCAGTTATATCCCATTTGCCGTATTCGTAGGTTTCAGACCTCCATTTACCGTCGGAGAACGAAATTTTGCAGGCGACATTTGAGGCGACATTCCAATAGTAAGGTGATGCATTCTGAATCGATTTCGTATATATGCGTATATATTGTATATATGTGTATATAGCTTATATTTGTAATTATGTTATAGTTACTAGTATATAAGGCGACATTCCAATATTGTATATATGTGTATATAACTGAATCGATTTCAAATTTCTGGTTTTCTGGAACTTCTAAAATGATTTGTTGTTTTGGTAATTTCTTGAAGGTGTGTCAATGGTGCTTTTTTTCATATGATTTATAAATTTGTCAAGTTGTTATTATAAAGTGGTTCATTTGGTGATTGGATATTCTTTGTTGTAGATTAAATTATGAACATAAATGATTTTGAAGTATTTGTTTGTATATATGTGAATATATTGTATATGAGGTATAAATTGTATACTTAATTGAATATCGTTTATTTGCCTATGGAAAATGAATTGTGTTTATGTATTCATGCTCCTTGGAATGACCTTATCCAAAGTTTAGGTTGTGAAGACTGCGTTATTTCCAATTGTTTTCTGATTTATGATTACGTTAATTGAAGCAGAATATATTGAATATATGGGGATATATTCATTATATTAATATAAATCTTATATATCTTACTGATAAGTTAAGAGAGTCGTTCATATTTTTATATGGGAATATATATACCCATATATTGTATATATGGGTATATAACTTATATTTGTATTCGTTTTATAGTTACTAGTATATAAGATATGTTAACAATCTCAGTCCATTCAAATATTTGGGTTTCTGGAACTTCTAAAATGATTTGTTGTTTTGGTAATTGCTTGAAGGTGTGCCAATGGTGCTTACATTCATATGCTTTATGAATGTGTCAAGTTGTTGTTATAAAGTGGTTCATTTGGTGATTGGATATTCTTTGATGTAGATTAAATTATAAACATAAATGATTCTGAAGTATTTGTTTGTATATATGGGAATATATTTTGTATGAGGTATAAATTGTATACATAATCGAAGATCGTTTATATGAGGAATATATTTAGTATTTTCCATGGTTTATGTAGGTATATATTTGTTTGATTACATTAACATGGTGAAGTGCAAGGGTGTACCAAAACAGAAAGAAATAAGAAGAAGTAATAGGTTAATGAACCAATCTGGCAGCAAGAAGAACAAAGAACCTTTATATGTTAAACTTAGCGAAGAGGTATGCAATACTGCTTATTATATTATTTCGAAGAATTATGTAGGTTGCAATATTTTGACAATTTTCAATCGGTGTGCTCTTAGGAGAGCACTGAGGAAGAAAAGAATGTAAAGGAAGCTCAAACATCGAAGTCGGCATTTTACAATAATTTGTTTGGTAATATGCCACGTTATGCTAAATACTCGAAAATATTCATTTCACCTAAACGAGAGGACATAATTGAGAGTGAAGTTAGTAGATGCGAACCTACAGTTGAGTTTCCAAGTGAAGAAGAAGAAGTCGTGGGAACTCAAATAGTTCCTGTTGTGGTAATACATATGGATATTTTTTATATTCACTCTTTGAAAAGATACACAATCGTTAACCATTATATGCATATATGTATATGATATTTACAGGTGCGTGCCGATCAACCTCGTATTGAGGAAATAACAGAGGAAAAAGTAATACTAGATAGTGTGGATGATAGAAAAGGGAAGAGGAAAGAGAGAGAAGAATTTGAGGTATTGAAGCATTATTATTAGTCCTATCTTTTCAAATAACATTCTAATTTGAATTTTGAAAAATGCAGGAGGACGAAATCTCAATAATTGAAAGATTGGAAAAATTGAAAAGGGGTGTGGGAAGAGCAAAGAACGTGTCGGGAATTAAGGGGAAGAAGAAAAAAGATGATACGATCAAAGAAAAGGTGATTATGGTAATTTTGAAATGCTTCTACGTCTAAATTTTTTTTCTTATGGATATTGATTATATTAATCTTGATTGAATTACAGAATGAAGTGTGGATGCAAGGATAAAAGGAAAAAAGAGAGATATGATAAAGGTAAATGTCATTTTATGCTATGATTCAGTATATTGTCAAGGAGTCGAAATATGTGATCTTATTTGTTATAAATTGAATCGTGCAGGACAAGGAGAACATCTCTAAAAATGATATTATATCGGAGAATGGAGACATGTACATCTATGATGTAAGTATTCGAATTAAGATCGTTGATAACTAATATGCTATTAGATGCCAATGAATATGCCGTTGGATGTATTGGTCTGTTCAATGTAAAGGGATATTGTTGTATATAATATATAGAATATTCTTAAATAGTGTCAACCAAGTTGCTGATGCATAATGCTTGCTCTGGTTCTATCATTGCTGCATATAAAGTTATGTTATATGTATATACAAATATTTTGATGTGCAGTTGAGAGGAACAGGTCCGTTCAAGAAAGGGGAGAATGGAAAAATGATTCCAATATTGAAAGATCAGGAAGTTGAACCATTGAGACGAACAAAACGTAGAGTGGTGATGCCTTCTAAGGTTCATAGATCACCATACACTACAAAGTTTGGTTCAGCTGAAGATCATAAATCAAAGCTATCAAGCATTGAAGATTTTGATGCTCCAACTTTCAACCTGTTATCACAACTTTGA

mRNA sequence

ATGCGCAGCGCTGGAAAATGCAAAGTCATTCCATTTCCATTAGCGTTACGCGACGCGTCGGGGGTTTGGCCAGGCGTTGGCCCGAATTTGGCGGCAAAATTCTATGGGTTGTGTAACCGTTCGTCGGTCGTCGTCTTCCTTGTCCGCCGTGACTGTTCCGGTCTGACTTCGCCGCGTTCGTCGGAAGCTGTATCGGTAAGTTTCCAGCCGTCGTCTTTGCTTTGTCTGCTTCAATTTCCGTCTGCACAATTCGTCTGTGTACTTCCGTCATTGTTGAAATGCTTCAGTTATATCCCATTTGCCGTATTCGTAGGTATATATTTGTTTGATTACATTAACATGGTGAAGTGCAAGGGTGTACCAAAACAGAAAGAAATAAGAAGAAGTAATAGGTTAATGAACCAATCTGGCAGCAAGAAGAACAAAGAACCTTTATATGTTAAACTTAGCGAAGAGGAGAGCACTGAGGAAGAAAAGAATGTAAAGGAAGCTCAAACATCGAAGTCGGCATTTTACAATAATTTGTTTGGTAATATGCCACGTTATGCTAAATACTCGAAAATATTCATTTCACCTAAACGAGAGGACATAATTGAGAGTGAAGTTAGTAGATGCGAACCTACAGTTGAGTTTCCAAGTGAAGAAGAAGAAGTCGTGGGAACTCAAATAGTTCCTGTTGTGGAGGACGAAATCTCAATAATTGAAAGATTGGAAAAATTGAAAAGGGGTGTGGGAAGAGCAAAGAACGTGTCGGGAATTAAGGGGAAGAAGAAAAAAGATGATACGATCAAAGAAAAGGTGATTATGGACAAGGAGAACATCTCTAAAAATGATATTATATCGGAGAATGGAGACATGTACATCTATGATTTGAGAGGAACAGGTCCGTTCAAGAAAGGGGAGAATGGAAAAATGATTCCAATATTGAAAGATCAGGAAGTTGAACCATTGAGACGAACAAAACGTAGAGTGGTGATGCCTTCTAAGGTTCATAGATCACCATACACTACAAAGTTTGGTTCAGCTGAAGATCATAAATCAAAGCTATCAAGCATTGAAGATTTTGATGCTCCAACTTTCAACCTGTTATCACAACTTTGA

Coding sequence (CDS)

ATGCGCAGCGCTGGAAAATGCAAAGTCATTCCATTTCCATTAGCGTTACGCGACGCGTCGGGGGTTTGGCCAGGCGTTGGCCCGAATTTGGCGGCAAAATTCTATGGGTTGTGTAACCGTTCGTCGGTCGTCGTCTTCCTTGTCCGCCGTGACTGTTCCGGTCTGACTTCGCCGCGTTCGTCGGAAGCTGTATCGGTAAGTTTCCAGCCGTCGTCTTTGCTTTGTCTGCTTCAATTTCCGTCTGCACAATTCGTCTGTGTACTTCCGTCATTGTTGAAATGCTTCAGTTATATCCCATTTGCCGTATTCGTAGGTATATATTTGTTTGATTACATTAACATGGTGAAGTGCAAGGGTGTACCAAAACAGAAAGAAATAAGAAGAAGTAATAGGTTAATGAACCAATCTGGCAGCAAGAAGAACAAAGAACCTTTATATGTTAAACTTAGCGAAGAGGAGAGCACTGAGGAAGAAAAGAATGTAAAGGAAGCTCAAACATCGAAGTCGGCATTTTACAATAATTTGTTTGGTAATATGCCACGTTATGCTAAATACTCGAAAATATTCATTTCACCTAAACGAGAGGACATAATTGAGAGTGAAGTTAGTAGATGCGAACCTACAGTTGAGTTTCCAAGTGAAGAAGAAGAAGTCGTGGGAACTCAAATAGTTCCTGTTGTGGAGGACGAAATCTCAATAATTGAAAGATTGGAAAAATTGAAAAGGGGTGTGGGAAGAGCAAAGAACGTGTCGGGAATTAAGGGGAAGAAGAAAAAAGATGATACGATCAAAGAAAAGGTGATTATGGACAAGGAGAACATCTCTAAAAATGATATTATATCGGAGAATGGAGACATGTACATCTATGATTTGAGAGGAACAGGTCCGTTCAAGAAAGGGGAGAATGGAAAAATGATTCCAATATTGAAAGATCAGGAAGTTGAACCATTGAGACGAACAAAACGTAGAGTGGTGATGCCTTCTAAGGTTCATAGATCACCATACACTACAAAGTTTGGTTCAGCTGAAGATCATAAATCAAAGCTATCAAGCATTGAAGATTTTGATGCTCCAACTTTCAACCTGTTATCACAACTTTGA

Protein sequence

MRSAGKCKVIPFPLALRDASGVWPGVGPNLAAKFYGLCNRSSVVVFLVRRDCSGLTSPRSSEAVSVSFQPSSLLCLLQFPSAQFVCVLPSLLKCFSYIPFAVFVGIYLFDYINMVKCKGVPKQKEIRRSNRLMNQSGSKKNKEPLYVKLSEEESTEEEKNVKEAQTSKSAFYNNLFGNMPRYAKYSKIFISPKREDIIESEVSRCEPTVEFPSEEEEVVGTQIVPVVEDEISIIERLEKLKRGVGRAKNVSGIKGKKKKDDTIKEKVIMDKENISKNDIISENGDMYIYDLRGTGPFKKGENGKMIPILKDQEVEPLRRTKRRVVMPSKVHRSPYTTKFGSAEDHKSKLSSIEDFDAPTFNLLSQL
Homology
[Close]
BLAST of Moc06g06490.1 vs. NCBI nr
Match: XP_022158806.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025272 [Momordica charantia])

HSP 1 Score: 167.2 bits (422), Expect = 2.7e-37
Identity = 91/124 (73.39%), Postives = 103/124 (83.06%), Query Frame = 0 

Query: 153 ESTEEEKNVKEAQTSKSAFYNNLFGNMPRYAKYSKIFISPKREDIIESEVSRCEPTVEFP 212
           ES EEEK   +AQTSK AFYNNLFGNMPRY KYS I ISP++EDIIE++V+RCEPTVEFP
Sbjct: 721 ESAEEEKKGNDAQTSKPAFYNNLFGNMPRYEKYSPIIISPEQEDIIETQVTRCEPTVEFP 780

Query: 213 SEEEEVVGTQIVPVVEDEISIIERLEKLKRGVGRAKNVSGIKGKKKKDDTIKEKVIMDKE 272
           + E+EV+GTQ+VP+VEDEI IIERLE LKRGVGR KNVS IKGKKK DDTIKEK    K+
Sbjct: 781 N-EDEVIGTQVVPLVEDEIPIIERLENLKRGVGRVKNVSEIKGKKKTDDTIKEKKFGRKD 840

Query: 273 NISK 277
              K
Sbjct: 841 KRKK 843

[Close]
BLAST of Moc06g06490.1 vs. ExPASy TrEMBL
Match: A0A6J1E220 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025272 OS=Momordica charantia OX=3673 GN=LOC111025272 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.3e-37
Identity = 91/124 (73.39%), Postives = 103/124 (83.06%), Query Frame = 0 

Query: 153 ESTEEEKNVKEAQTSKSAFYNNLFGNMPRYAKYSKIFISPKREDIIESEVSRCEPTVEFP 212
           ES EEEK   +AQTSK AFYNNLFGNMPRY KYS I ISP++EDIIE++V+RCEPTVEFP
Sbjct: 721 ESAEEEKKGNDAQTSKPAFYNNLFGNMPRYEKYSPIIISPEQEDIIETQVTRCEPTVEFP 780

Query: 213 SEEEEVVGTQIVPVVEDEISIIERLEKLKRGVGRAKNVSGIKGKKKKDDTIKEKVIMDKE 272
           + E+EV+GTQ+VP+VEDEI IIERLE LKRGVGR KNVS IKGKKK DDTIKEK    K+
Sbjct: 781 N-EDEVIGTQVVPLVEDEIPIIERLENLKRGVGRVKNVSEIKGKKKTDDTIKEKKFGRKD 840

Query: 273 NISK 277
              K
Sbjct: 841 KRKK 843

The following BLAST results are available for this feature:
BLAST of Moc06g06490.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022158806.12.7e-3773.39LOW QUALITY PROTEIN: uncharacterized protein LOC111025272 [Momordica charantia][more]
BLAST of Moc06g06490.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc06g06490.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E2201.3e-3773.39LOW QUALITY PROTEIN: uncharacterized protein LOC111025272 OS=Momordica charantia... [more]
BLAST of Moc06g06490.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 147..167
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..163
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 133..163

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Moc06g06490Moc06g06490gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Moc06g06490.1.exon1Moc06g06490.1.exon1exon
Moc06g06490.1.exon2Moc06g06490.1.exon2exon
Moc06g06490.1.exon3Moc06g06490.1.exon3exon
Moc06g06490.1.exon4Moc06g06490.1.exon4exon
Moc06g06490.1.exon5Moc06g06490.1.exon5exon
Moc06g06490.1.exon6Moc06g06490.1.exon6exon
Moc06g06490.1.exon7Moc06g06490.1.exon7exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Moc06g06490.1cds.Moc06g06490.1CDS
cds.Moc06g06490.1cds.Moc06g06490.1_2CDS
cds.Moc06g06490.1cds.Moc06g06490.1_3CDS
cds.Moc06g06490.1cds.Moc06g06490.1_4CDS
cds.Moc06g06490.1cds.Moc06g06490.1_5CDS
cds.Moc06g06490.1cds.Moc06g06490.1_6CDS
cds.Moc06g06490.1cds.Moc06g06490.1_7CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Moc06g06490.1Moc06g06490.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004386 helicase activity