Moc05g15990.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview
NameMoc05g15990.1
TypemRNA
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr5: 12052103 .. 12052956 (+)
Sequence length504
RNA-Seq ExpressionMoc05g15990.1
SyntenyMoc05g15990.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGGGAGTGGGGAAATGGTGAGTGGGGAAGTGGTGACTTCTCCCTCACTCTTCCTCCCTTATAAAAGGAAGGTTCTCCCCTTCTCGGTTTCCCGGTCGTCGGCTGATTGAGTTTTTGAAACTCCAACGAGAAAATCTCTCTCTCGGTCTCTTGGTCTCCCTCTCAATTATAAGATGGTTCCTATAAATCGAGTTCTTAACATCCAGAGGATAGCGAGGAAGGTCGGAGTTGATGTCTACATTGAAGAAGTGTCATCAAAGGTATGTTTCACTAACTTCCTTTTAATCATGCTTATGTATTTTCTTTGTTGTAATTCTAAATCAAGATCGAAGCACACACATTCACGCGCTTTCGCTGTGGGATTCGATCCCTTCACTATAAGTGTGGTAAATTTCACAGTTTATCGTTATTAGGTTCATGGGGATGCGTATCTTATGCTCCATTAATGGTGTTACGCTAGATATAGATACGCTAGTTTATCCTAGCCACATATGATTTTAAAGACTCCGAATTTGCCTATGACGTTGAATTTTGCAAGAACAAAATTCAAAAGATCGTAAAGGCATGGAACGCGGTTGTCAGAATTCAAAGTGCCCGATACCACAATAATGCATTTGAAGTGTACGAGCAATGGCATTCGAATAGGGGAAAAACTGCGGTTCTCCAACCAATCGACAAGAACGAAGAGAAGCTGCAGATTCTCACTGGAAGAGTTCTTACTGAGATGAGCCCAAATCAACCCACTCAGCGGAAGACTCGCATGATAGAATATGAGATACGAGAAAAGAACTCCAAATCGGCTAGACTGCAATTAGGATCAATCAAAGTCTACCTCAAAGCATTGAACTAG

mRNA sequence

ATGGCGGGGAGTGGGGAAATGGTGAGTGGGGAAGTGGTGACTTCTCCCTCACTCTTCCTCCCTTATAAAAGGAAGAGGATAGCGAGGAAGGTCGGAGTTGATGTCTACATTGAAGAAGTGTCATCAAAGTTTATCCTAGCCACATATGATTTTAAAGACTCCGAATTTGCCTATGACGTTGAATTTTGCAAGAACAAAATTCAAAAGATCGTAAAGGCATGGAACGCGGTTGTCAGAATTCAAAGTGCCCGATACCACAATAATGCATTTGAAGTGTACGAGCAATGGCATTCGAATAGGGGAAAAACTGCGGTTCTCCAACCAATCGACAAGAACGAAGAGAAGCTGCAGATTCTCACTGGAAGAGTTCTTACTGAGATGAGCCCAAATCAACCCACTCAGCGGAAGACTCGCATGATAGAATATGAGATACGAGAAAAGAACTCCAAATCGGCTAGACTGCAATTAGGATCAATCAAAGTCTACCTCAAAGCATTGAACTAG

Coding sequence (CDS)

ATGGCGGGGAGTGGGGAAATGGTGAGTGGGGAAGTGGTGACTTCTCCCTCACTCTTCCTCCCTTATAAAAGGAAGAGGATAGCGAGGAAGGTCGGAGTTGATGTCTACATTGAAGAAGTGTCATCAAAGTTTATCCTAGCCACATATGATTTTAAAGACTCCGAATTTGCCTATGACGTTGAATTTTGCAAGAACAAAATTCAAAAGATCGTAAAGGCATGGAACGCGGTTGTCAGAATTCAAAGTGCCCGATACCACAATAATGCATTTGAAGTGTACGAGCAATGGCATTCGAATAGGGGAAAAACTGCGGTTCTCCAACCAATCGACAAGAACGAAGAGAAGCTGCAGATTCTCACTGGAAGAGTTCTTACTGAGATGAGCCCAAATCAACCCACTCAGCGGAAGACTCGCATGATAGAATATGAGATACGAGAAAAGAACTCCAAATCGGCTAGACTGCAATTAGGATCAATCAAAGTCTACCTCAAAGCATTGAACTAG

Protein sequence

MAGSGEMVSGEVVTSPSLFLPYKRKRIARKVGVDVYIEEVSSKFILATYDFKDSEFAYDVEFCKNKIQKIVKAWNAVVRIQSARYHNNAFEVYEQWHSNRGKTAVLQPIDKNEEKLQILTGRVLTEMSPNQPTQRKTRMIEYEIREKNSKSARLQLGSIKVYLKALN
Homology
[Close]
BLAST of Moc05g15990.1 vs. NCBI nr
Match: XP_022150759.1 (uncharacterized protein LOC111018820 [Momordica charantia])

HSP 1 Score: 134.8 bits (338), Expect = 6.8e-28
Identity = 63/94 (67.02%), Postives = 77/94 (81.91%), Query Frame = 0 

Query: 43  KFILATYDFKDSEFAYDVEFCKNKIQKIVKAWNAVVRIQSARYHNNAFEVYEQWHSNRGK 102
           +FI AT+D ++SEFAYDV FCKNKIQ++VKAW A+VRIQS  YH+N FE YEQWHS+RGK
Sbjct: 256 QFIPATHDLRNSEFAYDVRFCKNKIQEVVKAWKAIVRIQSGNYHDNIFEGYEQWHSSRGK 315

Query: 103 TAVLQPIDKNEEKLQILTGRVLTEMSPNQPTQRK 137
           T VL   DK + KL++ TG +L+EMSPNQ TQRK
Sbjct: 316 TVVLLQTDKGKGKLEVPTGIILSEMSPNQSTQRK 349

[Close]
BLAST of Moc05g15990.1 vs. NCBI nr
Match: XP_022147190.1 (uncharacterized protein LOC111016201 [Momordica charantia])

HSP 1 Score: 133.7 bits (335), Expect = 1.5e-27
Identity = 61/94 (64.89%), Postives = 77/94 (81.91%), Query Frame = 0 

Query: 43  KFILATYDFKDSEFAYDVEFCKNKIQKIVKAWNAVVRIQSARYHNNAFEVYEQWHSNRGK 102
           +FI AT+D ++SEFAYD+ FCKNKIQ++VKAW  +VRIQS  YH+N FE YE+WHS+RGK
Sbjct: 364 QFIPATHDLRNSEFAYDIGFCKNKIQEVVKAWKTIVRIQSGNYHDNIFEGYEKWHSSRGK 423

Query: 103 TAVLQPIDKNEEKLQILTGRVLTEMSPNQPTQRK 137
           T VL P DK + KL++ T R+L+EMSPNQ TQRK
Sbjct: 424 TVVLLPTDKGKGKLEVPTRRILSEMSPNQSTQRK 457

[Close]
BLAST of Moc05g15990.1 vs. ExPASy TrEMBL
Match: A0A6J1DB13 (uncharacterized protein LOC111018820 OS=Momordica charantia OX=3673 GN=LOC111018820 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 3.3e-28
Identity = 63/94 (67.02%), Postives = 77/94 (81.91%), Query Frame = 0 

Query: 43  KFILATYDFKDSEFAYDVEFCKNKIQKIVKAWNAVVRIQSARYHNNAFEVYEQWHSNRGK 102
           +FI AT+D ++SEFAYDV FCKNKIQ++VKAW A+VRIQS  YH+N FE YEQWHS+RGK
Sbjct: 256 QFIPATHDLRNSEFAYDVRFCKNKIQEVVKAWKAIVRIQSGNYHDNIFEGYEQWHSSRGK 315

Query: 103 TAVLQPIDKNEEKLQILTGRVLTEMSPNQPTQRK 137
           T VL   DK + KL++ TG +L+EMSPNQ TQRK
Sbjct: 316 TVVLLQTDKGKGKLEVPTGIILSEMSPNQSTQRK 349

[Close]
BLAST of Moc05g15990.1 vs. ExPASy TrEMBL
Match: A0A6J1CZG4 (uncharacterized protein LOC111016201 OS=Momordica charantia OX=3673 GN=LOC111016201 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 7.4e-28
Identity = 61/94 (64.89%), Postives = 77/94 (81.91%), Query Frame = 0 

Query: 43  KFILATYDFKDSEFAYDVEFCKNKIQKIVKAWNAVVRIQSARYHNNAFEVYEQWHSNRGK 102
           +FI AT+D ++SEFAYD+ FCKNKIQ++VKAW  +VRIQS  YH+N FE YE+WHS+RGK
Sbjct: 364 QFIPATHDLRNSEFAYDIGFCKNKIQEVVKAWKTIVRIQSGNYHDNIFEGYEKWHSSRGK 423

Query: 103 TAVLQPIDKNEEKLQILTGRVLTEMSPNQPTQRK 137
           T VL P DK + KL++ T R+L+EMSPNQ TQRK
Sbjct: 424 TVVLLPTDKGKGKLEVPTRRILSEMSPNQSTQRK 457

The following BLAST results are available for this feature:
BLAST of Moc05g15990.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022150759.16.8e-2867.02uncharacterized protein LOC111018820 [Momordica charantia][more]
XP_022147190.11.5e-2764.89uncharacterized protein LOC111016201 [Momordica charantia][more]
BLAST of Moc05g15990.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc05g15990.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DB133.3e-2867.02uncharacterized protein LOC111018820 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A6J1CZG47.4e-2864.89uncharacterized protein LOC111016201 OS=Momordica charantia OX=3673 GN=LOC111016... [more]
BLAST of Moc05g15990.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Moc05g15990Moc05g15990gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Moc05g15990.1.exon1Moc05g15990.1.exon1exon
Moc05g15990.1.exon2Moc05g15990.1.exon2exon
Moc05g15990.1.exon3Moc05g15990.1.exon3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Moc05g15990.1cds.Moc05g15990.1CDS
cds.Moc05g15990.1cds.Moc05g15990.1_2CDS
cds.Moc05g15990.1cds.Moc05g15990.1_3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Moc05g15990.1Moc05g15990.1-proteinpolypeptide