Moc05g12190.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g12190.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr5: 9532090 .. 9532464 (-)
Sequence length	375
RNA-Seq Expression	Moc05g12190.1
Synteny	Moc05g12190.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAATGAGAGTATCTCCAATGTGAGGGGAATTGGAGATGTTTGTTTGAAGACAGGCAAAGGGGTCAAGTTTGGCCTACGAGACGACAGGTATATTCCTAGCTTCATATATAATTTGTTATCTGTAGGGAAACTAGATGACGATGGTTACAGTAGTGACTTTAGTGGGGGTTGCTGGAAGCTCAAGAGGGAATCCAGTGTGGTGGCAACATGCCACAAGATATCTTCTGTTTATGTGTCCGAGTTTGAGGTTGCCAGGGGATCTGAAAGACAGAGGATGCATAGTCTAGCTGCAAATGGTTCAAGGCGAGACTTAAAAGAATCAGCAGCATTGACAACCAAGACAGATCAGAAGAATCTGCCATCAACTTAA

mRNA sequence

ATGGGAAATGAGAGTATCTCCAATGTGAGGGGAATTGGAGATGTTTGTTTGAAGACAGGCAAAGGGGTCAAGTTTGGCCTACGAGACGACAGGTATATTCCTAGCTTCATATATAATTTGTTATCTGTAGGGAAACTAGATGACGATGGTTACAGTAGTGACTTTAGTGGGGGTTGCTGGAAGCTCAAGAGGGAATCCAGTGTGGTGGCAACATGCCACAAGATATCTTCTGTTTATGTGTCCGAGTTTGAGGTTGCCAGGGGATCTGAAAGACAGAGGATGCATAGTCTAGCTGCAAATGGTTCAAGGCGAGACTTAAAAGAATCAGCAGCATTGACAACCAAGACAGATCAGAAGAATCTGCCATCAACTTAA

Coding sequence (CDS)

ATGGGAAATGAGAGTATCTCCAATGTGAGGGGAATTGGAGATGTTTGTTTGAAGACAGGCAAAGGGGTCAAGTTTGGCCTACGAGACGACAGGTATATTCCTAGCTTCATATATAATTTGTTATCTGTAGGGAAACTAGATGACGATGGTTACAGTAGTGACTTTAGTGGGGGTTGCTGGAAGCTCAAGAGGGAATCCAGTGTGGTGGCAACATGCCACAAGATATCTTCTGTTTATGTGTCCGAGTTTGAGGTTGCCAGGGGATCTGAAAGACAGAGGATGCATAGTCTAGCTGCAAATGGTTCAAGGCGAGACTTAAAAGAATCAGCAGCATTGACAACCAAGACAGATCAGAAGAATCTGCCATCAACTTAA

Protein sequence

MGNESISNVRGIGDVCLKTGKGVKFGLRDDRYIPSFIYNLLSVGKLDDDGYSSDFSGGCWKLKRESSVVATCHKISSVYVSEFEVARGSERQRMHSLAANGSRRDLKESAALTTKTDQKNLPST

Homology

[Close]

BLAST of Moc05g12190.1 vs. NCBI nr
Match: RVW91307.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 94.7 bits (234), Expect = 5.8e-16
Identity = 42/88 (47.73%), Postives = 62/88 (70.45%), Query Frame = 0


Query: 1   MGNESISNVRGIGDVCLKTGKGVKFGLRDDRYIPSFIYNLLSVGKLDDDGYSSDFSGGCW 60
           MGNE++S + G+GD+CL+T  G K  LRD R++P    NL+S GKLDD+GY+++FS G W
Sbjct: 294 MGNENVSKIVGMGDICLETNTGCKLLLRDVRHVPDIRLNLISAGKLDDEGYNNNFSDGKW 353

Query: 61  KLKRESSVVATCHKISSVYVSEFEVARG 89
           KL + S VVA  +K  S+Y  + ++ +G
Sbjct: 354 KLSKGSLVVAKGNKTCSLYTVQAKICKG 381

[Close]

BLAST of Moc05g12190.1 vs. NCBI nr
Match: KAF7129225.1 (hypothetical protein RHSIM_Rhsim10G0050800 [Rhododendron simsii])

HSP 1 Score: 91.7 bits (226), Expect = 4.9e-15
Identity = 41/88 (46.59%), Postives = 61/88 (69.32%), Query Frame = 0


Query: 1   MGNESISNVRGIGDVCLKTGKGVKFGLRDDRYIPSFIYNLLSVGKLDDDGYSSDFSGGCW 60
           MGNE +S + G+GDVCL+T  G K  L+D R++P+   NL+S GKLDD+GY + F  G W
Sbjct: 330 MGNEGVSKIVGMGDVCLETNTGCKLLLKDVRHVPNIRLNLISAGKLDDEGYKNQFGDGKW 389

Query: 61  KLKRESSVVATCHKISSVYVSEFEVARG 89
           KL + S VVA   K S++Y+ + ++++G
Sbjct: 390 KLSKGSLVVARGKKSSTLYLMQAKLSKG 417

[Close]

BLAST of Moc05g12190.1 vs. NCBI nr
Match: KAF7129546.1 (hypothetical protein RHSIM_Rhsim10G0154200 [Rhododendron simsii])

HSP 1 Score: 91.3 bits (225), Expect = 6.4e-15
Identity = 40/88 (45.45%), Postives = 60/88 (68.18%), Query Frame = 0


Query: 1   MGNESISNVRGIGDVCLKTGKGVKFGLRDDRYIPSFIYNLLSVGKLDDDGYSSDFSGGCW 60
           MGNE +S + G+GDVCL+T  G K  L+D R++P    NL+S GKLDD+GY + F  G W
Sbjct: 330 MGNEGVSKIVGMGDVCLETNTGCKLLLKDVRHVPDIRLNLISAGKLDDEGYKNQFGDGKW 389

Query: 61  KLKRESSVVATCHKISSVYVSEFEVARG 89
           KL + S +VA   K S++Y+ + ++++G
Sbjct: 390 KLSKGSLIVARGKKSSTLYLMQVKLSKG 417

[Close]

BLAST of Moc05g12190.1 vs. NCBI nr
Match: RVW84195.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 91.3 bits (225), Expect = 6.4e-15
Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 0


Query: 1   MGNESISNVRGIGDVCLKTGKGVKFGLRDDRYIPSFIYNLLSVGKLDDDGYSSDFSGGCW 60
           MGNE +S + G+GD+CL+T  G K  LRD R++P    NL+S GKLDD+GY+++FS G W
Sbjct: 301 MGNEDVSKIVGMGDICLETNTGCKLLLRDVRHVPDIRLNLISTGKLDDEGYNNNFSDGKW 360

Query: 61  KLKRESSVVATCHKISSVYVSEFEVAR 88
           KL + S VVA   K  S+Y  + ++ +
Sbjct: 361 KLSKGSLVVAKGKKTCSLYTVQAKICK 387

[Close]

BLAST of Moc05g12190.1 vs. NCBI nr
Match: RVW14266.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 91.3 bits (225), Expect = 6.4e-15
Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 0


Query: 1   MGNESISNVRGIGDVCLKTGKGVKFGLRDDRYIPSFIYNLLSVGKLDDDGYSSDFSGGCW 60
           MGNE +S + G+GD+CL+T  G K  LRD R++P    NL+S GKLDD+GY+++FS G W
Sbjct: 537 MGNEDVSKIVGMGDICLETNTGCKLLLRDVRHVPDIRLNLISTGKLDDEGYNNNFSDGKW 596

Query: 61  KLKRESSVVATCHKISSVYVSEFEVAR 88
           KL + S VVA   K  S+Y  + ++ +
Sbjct: 597 KLSKGSLVVAKGKKTCSLYTVQAKICK 623

[Close]

BLAST of Moc05g12190.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.2e-11
Identity = 35/88 (39.77%), Postives = 51/88 (57.95%), Query Frame = 0


Query: 1   MGNESISNVRGIGDVCLKTGKGVKFGLRDDRYIPSFIYNLLSVGKLDDDGYSSDFSGGCW 60
           MGN S S + GIGD+C+KT  G    L+D R++P    NL+S   LD DGY S F+   W
Sbjct: 324 MGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKW 383

Query: 61  KLKRESSVVATCHKISSVYVSEFEVARG 89
           +L + S V+A      ++Y +  E+ +G
Sbjct: 384 RLTKGSLVIAKGVARGTLYRTNAEICQG 411

[Close]

BLAST of Moc05g12190.1 vs. ExPASy TrEMBL
Match: A0A438I3N7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1722 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.8e-16
Identity = 42/88 (47.73%), Postives = 62/88 (70.45%), Query Frame = 0


Query: 1   MGNESISNVRGIGDVCLKTGKGVKFGLRDDRYIPSFIYNLLSVGKLDDDGYSSDFSGGCW 60
           MGNE++S + G+GD+CL+T  G K  LRD R++P    NL+S GKLDD+GY+++FS G W
Sbjct: 294 MGNENVSKIVGMGDICLETNTGCKLLLRDVRHVPDIRLNLISAGKLDDEGYNNNFSDGKW 353

Query: 61  KLKRESSVVATCHKISSVYVSEFEVARG 89
           KL + S VVA  +K  S+Y  + ++ +G
Sbjct: 354 KLSKGSLVVAKGNKTCSLYTVQAKICKG 381

[Close]

BLAST of Moc05g12190.1 vs. ExPASy TrEMBL
Match: A0A438BTH6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_4171 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.1e-15
Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 0


Query: 1   MGNESISNVRGIGDVCLKTGKGVKFGLRDDRYIPSFIYNLLSVGKLDDDGYSSDFSGGCW 60
           MGNE +S + G+GD+CL+T  G K  LRD R++P    NL+S GKLDD+GY+++FS G W
Sbjct: 537 MGNEDVSKIVGMGDICLETNTGCKLLLRDVRHVPDIRLNLISTGKLDDEGYNNNFSDGKW 596

Query: 61  KLKRESSVVATCHKISSVYVSEFEVAR 88
           KL + S VVA   K  S+Y  + ++ +
Sbjct: 597 KLSKGSLVVAKGKKTCSLYTVQAKICK 623

[Close]

BLAST of Moc05g12190.1 vs. ExPASy TrEMBL
Match: A0A438HI91 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1199 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.1e-15
Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 0


Query: 1   MGNESISNVRGIGDVCLKTGKGVKFGLRDDRYIPSFIYNLLSVGKLDDDGYSSDFSGGCW 60
           MGNE +S + G+GD+CL+T  G K  LRD R++P    NL+S GKLDD+GY+++FS G W
Sbjct: 301 MGNEDVSKIVGMGDICLETNTGCKLLLRDVRHVPDIRLNLISTGKLDDEGYNNNFSDGKW 360

Query: 61  KLKRESSVVATCHKISSVYVSEFEVAR 88
           KL + S VVA   K  S+Y  + ++ +
Sbjct: 361 KLSKGSLVVAKGKKTCSLYTVQAKICK 387

[Close]

BLAST of Moc05g12190.1 vs. ExPASy TrEMBL
Match: A0A438IBT7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_788 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.1e-15
Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 0


Query: 1   MGNESISNVRGIGDVCLKTGKGVKFGLRDDRYIPSFIYNLLSVGKLDDDGYSSDFSGGCW 60
           MGNE +S + G+GD+CL+T  G K  LRD R++P    NL+S GKLDD+GY+++FS G W
Sbjct: 271 MGNEDVSKIFGMGDICLETNTGCKLLLRDVRHVPDIRLNLISAGKLDDEGYNNNFSDGKW 330

Query: 61  KLKRESSVVATCHKISSVYVSEFEVAR 88
           KL + S VVA   K  S+Y  + ++ +
Sbjct: 331 KLSKGSLVVAKGKKTCSLYTVQAKICK 357

[Close]

BLAST of Moc05g12190.1 vs. ExPASy TrEMBL
Match: A0A438E432 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_810 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.1e-15
Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 0


Query: 1   MGNESISNVRGIGDVCLKTGKGVKFGLRDDRYIPSFIYNLLSVGKLDDDGYSSDFSGGCW 60
           MGNE +S + G+GD+CL+T  G K  LRD R++P    NL+S GKLDD+GY+++FS G W
Sbjct: 190 MGNEDVSKIVGMGDICLETNTGCKLLLRDVRHVPDIRLNLISAGKLDDEGYNNNFSDGKW 249

Query: 61  KLKRESSVVATCHKISSVYVSEFEVAR 88
           KL + S VVA   K  S+Y  + ++ +
Sbjct: 250 KLSKGSLVVAKGKKTCSLYTVQAKICK 276

The following BLAST results are available for this feature:

BLAST of Moc05g12190.1 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW91307.1	5.8e-16	47.73	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
KAF7129225.1	4.9e-15	46.59	hypothetical protein RHSIM_Rhsim10G0050800 [Rhododendron simsii]	[more]
KAF7129546.1	6.4e-15	45.45	hypothetical protein RHSIM_Rhsim10G0154200 [Rhododendron simsii]	[more]
RVW84195.1	6.4e-15	47.13	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW14266.1	6.4e-15	47.13	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of Moc05g12190.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.2e-11	39.77	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Moc05g12190.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438I3N7	2.8e-16	47.73	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438BTH6	3.1e-15	47.13	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438HI91	3.1e-15	47.13	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438IBT7	3.1e-15	47.13	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438E432	3.1e-15	47.13	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]

BLAST of Moc05g12190.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..124

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc05g12190	Moc05g12190	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc05g12190.1.exon1	Moc05g12190.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc05g12190.1	cds.Moc05g12190.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc05g12190.1	Moc05g12190.1-protein	polypeptide