Moc05g09720.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g09720.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr5: 7563896 .. 7564398 (+)
Sequence length	384
RNA-Seq Expression	Moc05g09720.1
Synteny	Moc05g09720.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGGGGATGATCTTTCTTCTCCACTGGTTTCTGTGATGGTGGATGGTGGTCGGGTATTGGGGATCTCCCCGTTAGATGTTGACCATGTTGTTGTGGTTGGCAAAATCAAAACCAACGTTGTTATGTATGGTCTGTGGCTTAGTCATTTCGACATTTTGAAGAGTTATCAGGCACAGAATTGGAGATGACACCCACCTGCAATCTCTTGGGATGACTCTTTATCTCTGTTTCATCTTGGATCAGAGAACTTCCATGGTCCAATGGTAAGGAAGACGGAGCAATAGGTGGGCAACGACGAAGGTGCAGTGGCAATAGGTCAAACACCATTTTGGAATATGGGGATGGTATTGGTCTTAATTATATTAAGATTTGTGACCAGCATGATTTAGGAAATTTGCCTAATCTTTCCTTATCTGTCATGGTGGAGAATATAAAAGCAACTTTGGAGGCAATTATTTCTGTTCCAATTGTGAATAAGGATGTCATGCACCATTTCTGA

mRNA sequence

ATGTTCGGGGATGATCTTTCTTCTCCACTGGTTTCTGTGATGGTGGATGGTGGTCGGGTATTGGGGATCTCCCCGTTAGATGTTGACCATGTTGTTGTGGTTGGCAAAATCAAAACCAACGTTGTTATAGAACTTCCATGGTCCAATGGTAAGGAAGACGGAGCAATAGGTGGGCAACGACGAAGGTGCAGTGGCAATAGGTCAAACACCATTTTGGAATATGGGGATGGTATTGGTCTTAATTATATTAAGATTTGTGACCAGCATGATTTAGGAAATTTGCCTAATCTTTCCTTATCTGTCATGGTGGAGAATATAAAAGCAACTTTGGAGGCAATTATTTCTGTTCCAATTGTGAATAAGGATGTCATGCACCATTTCTGA

Coding sequence (CDS)

ATGTTCGGGGATGATCTTTCTTCTCCACTGGTTTCTGTGATGGTGGATGGTGGTCGGGTATTGGGGATCTCCCCGTTAGATGTTGACCATGTTGTTGTGGTTGGCAAAATCAAAACCAACGTTGTTATAGAACTTCCATGGTCCAATGGTAAGGAAGACGGAGCAATAGGTGGGCAACGACGAAGGTGCAGTGGCAATAGGTCAAACACCATTTTGGAATATGGGGATGGTATTGGTCTTAATTATATTAAGATTTGTGACCAGCATGATTTAGGAAATTTGCCTAATCTTTCCTTATCTGTCATGGTGGAGAATATAAAAGCAACTTTGGAGGCAATTATTTCTGTTCCAATTGTGAATAAGGATGTCATGCACCATTTCTGA

Protein sequence

MFGDDLSSPLVSVMVDGGRVLGISPLDVDHVVVVGKIKTNVVIELPWSNGKEDGAIGGQRRRCSGNRSNTILEYGDGIGLNYIKICDQHDLGNLPNLSLSVMVENIKATLEAIISVPIVNKDVMHHF

Homology

[Close]

BLAST of Moc05g09720.1 vs. NCBI nr
Match: XP_022159860.1 (uncharacterized protein LOC111026150 [Momordica charantia])

HSP 1 Score: 58.2 bits (139), Expect = 6.2e-05
Identity = 45/119 (37.82%), Postives = 59/119 (49.58%), Query Frame = 0


Query: 14  MVDGGRVLGISPLDVDHVVVVGKIKTNVVIELPWSN-----------------GKEDGAI 73
           M D   +  ISPLD +  VVV KIK N+V+  PW                    ++ G  
Sbjct: 1   MADSDWMSEISPLDANSAVVVDKIKANIVMYGPWHRHHDVLKSYHAQNWTRMMEQKVGDD 60

Query: 74  GGQRRRCSGNRSNTILEYGDGIGLNYIKICDQHDLGNLPNLSLSVMVENIKATLEAIIS 116
           GG     +  +SNT+L   + I LN ++I  QHD GNL N SL V VE+ K T + IIS
Sbjct: 61  GG----AATIKSNTVLGSVEVINLNCLEIPCQHDFGNLSNPSLPVTVED-KTTFDTIIS 114

[Close]

BLAST of Moc05g09720.1 vs. ExPASy TrEMBL
Match: A0A6J1DZZ2 (uncharacterized protein LOC111026150 OS=Momordica charantia OX=3673 GN=LOC111026150 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.0e-05
Identity = 45/119 (37.82%), Postives = 59/119 (49.58%), Query Frame = 0


Query: 14  MVDGGRVLGISPLDVDHVVVVGKIKTNVVIELPWSN-----------------GKEDGAI 73
           M D   +  ISPLD +  VVV KIK N+V+  PW                    ++ G  
Sbjct: 1   MADSDWMSEISPLDANSAVVVDKIKANIVMYGPWHRHHDVLKSYHAQNWTRMMEQKVGDD 60

Query: 74  GGQRRRCSGNRSNTILEYGDGIGLNYIKICDQHDLGNLPNLSLSVMVENIKATLEAIIS 116
           GG     +  +SNT+L   + I LN ++I  QHD GNL N SL V VE+ K T + IIS
Sbjct: 61  GG----AATIKSNTVLGSVEVINLNCLEIPCQHDFGNLSNPSLPVTVED-KTTFDTIIS 114

The following BLAST results are available for this feature:

BLAST of Moc05g09720.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159860.1	6.2e-05	37.82	uncharacterized protein LOC111026150 [Momordica charantia]	[more]

BLAST of Moc05g09720.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g09720.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DZZ2	3.0e-05	37.82	uncharacterized protein LOC111026150 OS=Momordica charantia OX=3673 GN=LOC111026...	[more]

BLAST of Moc05g09720.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc05g09720	Moc05g09720	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc05g09720.1.exon1	Moc05g09720.1.exon1	exon
Moc05g09720.1.exon2	Moc05g09720.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc05g09720.1	cds.Moc05g09720.1	CDS
cds.Moc05g09720.1	cds.Moc05g09720.1_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc05g09720.1	Moc05g09720.1-protein	polypeptide