Moc04g08560.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g08560.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	protein FAR-RED ELONGATED HYPOCOTYL 3-like
Location	chr4: 6169309 .. 6172215 (+)
Sequence length	1497
RNA-Seq Expression	Moc04g08560.1
Synteny	Moc04g08560.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACTCACCTATACGTACTGTCAACCCGCCATCTTCTGTACAATTTATGACTCCATTGACGGATAATGTTGTCCCATGCAATTTAGGCAAAGATGAACAAGAACACTTCAGTCAGTGGGATGATGTCGGAGGTGATGAGGACCATGAGTATGAGGATGAGGATGATGGTTACATAGGAACTGAGAATGAGGATGATGATTACATAGAAACTGAGAATAAGGAATGAATCTGATGACCTAGTTTGTGGCAGTGATCTATCCTCTAGAACACCTGTTGTTGAATTACAGTCTGTAAGTAGGAATGTCCTTTGTGCAACTACTAATAGTCAGCATGCATCCTTAGAACATATCGATAAAATTTGTAATAAGGATGATTTTATTGACGACATTGTAATTGGTAGTGTTTTTCGATCTAATGATGAATTACAATTTAAACTGGACGTTTTTGCTATCAATAGGAATTCTGAGTACAATGTTAAGAAATCTACTACAAAGCTATTATCTATACCATGCACGGAAGAGGGATGCAAATGGGCCCTACGTGCAAGAAGAATCAAAGGTTCGGATACCTTTCTCATCTCAACATTTTCTGAGAATCATAGTTGCGAACGACCGACACTTACACATGACAATCGACAAGCCGGTAGTTCGGTGGTGGGTCAGTTGATAAAGTCCAACTTTGAGGAGGTCAGCTGTCGTTACAAGCCTAAAGATATTATGAATGATATGCGAAAGAATTATGGTGTCAATGTCCGATATGAAAAGGCATGGTGAGCAAAAGAAGTCGCATTAGGCCTATTGATGAGATTGCCTAAAGAGTCGTACTATACTCTAAGTATAGAGAGGCTATGAAGACCGTGAATCAAGGAACAGTTTTCCACATGAAATTGGAGGACGACACATTCTTCAAGTACACATTCATGACCTTGGGATGCTCGATTAAGGGTTTTGGAAGTTGCATACGACCTATACTTATGATTGACGGGCACATCTGAAGGGGAAGTACAAGGGTTTGGTTTTTCGAGCGGGTTAAGATTTGTATAGGTGACATAAACGGTTTGGTTTTTGTATTTGACCGGCATCAAAGTATCACAAACTCCATGGTAACGGTGTTTCCTGATGCAACGCACGTCACATGTATGCATCATGTAGTGATGAAATTGAATGAGAGGTTTAGAAACGAGGGAATGTAAAAACTTTTCTATAAAGTAGCAAAGGTGTTCATGGTATCAAAGTTTCGCTACTATTGAGGCAAACTAACCGGATTCCCAAGAGTCTATAAATATTTGGAAGACATCAGATTCAACAAGTGGGCTCGTGCATATCAACCTGGAATGAGGTATAACCAAATGACCTCAAATCTTGCCAAATCCATGAATGCGATACTTGTTCATGCTCGTACTTTGCCAATAACAGCTCTGAAAATTGTCGAGCTCTATTACAACAATGGTTTTATGAGAGGCGGACAGCTGCCTCTAGTCGAGGAACAATTCTTACTAAATATGCAGATGATATTCTTAAAGAAGAGGCAGAATAAGCTCGATATCATCATGTCAGGCCAATTGATCGGTTCAAATTCAAAGTGCATGATGGTACGTCCAAGGTAAGTGTCAACCTGAATAGCAAGACCTGTACATGTAAACAATTTGACTATTTCGAGATTCCATTCTCTCACGCCATTAATGAGGCAGTTTTTCGAAACATTAGAGTGAATTCATTAGGTTCCAATAGGTACCGAATCGAAACCCTCATACTTGGTTACGTCGAATCCGTGTATCCACTCGGAGATGAGGAAGATTAGATTTTACTCGATGAATACGTGTCGAAGACGATTAAGCCACCAAAATTTGTTTCTCGTGTTGGACGTCGCCAAACTGTGTGAATACCATCAGTCGGGGAAGTCCGACAGTTACACAAATGCGGGCGATGTGGAAACGTTGGACACAACCGTAAGATGTGTAGGCAGCTGCTCCGAACAAAATGATATGGTTGTTATTGAATTTTGTTTTATTATAGTCGGAACTATGTGTGCTATGTAAATACTACTACATTATGGTTTTGCTGGCATTCAAATTATGTATTTTGTAGGTTCATTTCGGATTGCAAAAGAAATAGACTAGGTCAAGAATAATGCTTTTCAAATTCTGTCATAATTATCGGGCTCTATCTCGAGCGTGGTAGACCCCGATGTTGGCTCATTTTTTGGTTCTGTCAAAATTTTGGTTCAATCTCGGGCGAGTTGAAGCCCAAGGTTGGGTCATTTTCAGGTTCTGTCAAAATTCTCGGGCTTGATCTCGGGTGAGGTTGAACCAAAAGTTGGCATATTTTCACGTATTTCCATAATTCTCGACCAAATTATACTCGACCCCGACCGTAAAATTCAATGAGCTAAGAAAATAGAGATTCAATGATTAAATAGTTCGTACACTTGATTATTTCCGATAATAAAGTGATTACTAAATGATTACCAAATAGAGATTATAGAGAATATATTGAAAAATATTTCGTACAATTGATCACCAAACTGCTTTATTAGACCATAGCTGGAGGACAAATTGCCTCCTCAAGTATGACATATTGTTTTGTCTCAATGTTTATAAAGAAGTCCCTATTACATCATATTCAAAATACTTAACACAAAAAATGTCGCAGTCTCTACTACCAAACTACTGCGGTGCCAATGTAATCCTAAGAATTCGCCATGGTGTCATTGGTAGGTTTGGGCGTACCACGATGACCTGAGATTTATGCAGTAACGGCGGGATGACTGTGCGCATGACCTTCAGTTGCTACTCCAATGATGCATCTGAGGTAATAGACCTCAAGGAGTCCCAGACAACGATCTCACCTTCAACGGAGTCTATGCATATCATAACCCAATGGTTGCTGTTGACATTGAAGGGTAA

mRNA sequence

ATGCACTCACCTATACGTACTGTCAACCCGCCATCTTCTGTACAATTTATGACTCCATTGACGGATAATGTTGTCCCATGCAATTTAGGCAAAGATGAACAAGAACACTTCAGTCATGATCTATCCTCTAGAACACCTGTTGTTGAATTACAGTCTGTAAGTAGGAATGTCCTTTGTGCAACTACTAATAGTCAGCATGCATCCTTAGAACATATCGATAAAATTTGTAATAAGGATGATTTTATTGACGACATTGTAATTGGTAGTGTTTTTCGATCTAATGATGAATTACAATTTAAACTGGACGTTTTTGCTATCAATAGGAATTCTGAGTACAATGTTAAGAAATCTACTACAAAGCTATTATCTATACCATGCACGGAAGAGGGATGCAAATGGGCCCTACGTGCAAGAAGAATCAAAGGTTCGGATACCTTTCTCATCTCAACATTTTCTGAGAATCATAGTTGCGAACGACCGACACTTACACATGACAATCGACAAGCCGGTAGTTCGGTGGTGGGTCAGTTGATAAAGTCCAACTTTGAGGAGGTCAGCTGTCGTTACAAGCCTAAAGATATTATGAATGATATGCGAAAGAATTATGGTGTCAATGTCCGATATGAAAAGGCATGGGGAAGTACAAGGGTTTGGTTTTTCGAGCGGGTTAAGATTTGTATAGGTGACATAAACGGTTTGGTTTTTGTATTTGACCGGCATCAAAGTATCACAAACTCCATGGTAACGGTGTTTCCTGATGCAACGCACGTCACATGCAAACTAACCGGATTCCCAAGAGTCTATAAATATTTGGAAGACATCAGATTCAACAAGTGGGCTCGTGCATATCAACCTGGAATGAGGTATAACCAAATGACCTCAAATCTTGCCAAATCCATGAATGCGATACTTGTTCATGCTCGTACTTTGCCAATAACAGCTCTGAAAATTGTCGAGCTCTATTACAACAATGGTTTTATGAGAGGCGGACAGCTGCCTCTAGTCGAGGAACAATTCTTACTAAATATGCAGATGATATTCTTAAAGAAGAGGCAGAATAAGCTCGATATCATCATGTCAGGCCAATTGATCGGTTCAAATTCAAAGTGCATGATGGTTCCAATAGGTACCGAATCGAAACCCTCATACTTGGTTACGTCGAATCCGTGTATCCACTCGGAGATGAGGAAGATTAGATTTTACTCGATGAATACGTGTCGAAGACGATTAAGCCACCAAAATTTGTTTCTCGTGTTGGACGTCGCCAAACTGTGTGAATACCATCAGTCGGGGAAGTCCGACAGTTACACAAATGCGGGCGATGTGGAAACGTTGGACACAACCTCTCTACTACCAAACTACTGCGGTGCCAATGTAATCCTAAGAATTCGCCATGGTGTCATTGGTAGACCTCAAGGAGTCCCAGACAACGATCTCACCTTCAACGGAGTCTATGCATATCATAACCCAATGGTTGCTGTTGACATTGAAGGGTAA

Coding sequence (CDS)

ATGCACTCACCTATACGTACTGTCAACCCGCCATCTTCTGTACAATTTATGACTCCATTGACGGATAATGTTGTCCCATGCAATTTAGGCAAAGATGAACAAGAACACTTCAGTCATGATCTATCCTCTAGAACACCTGTTGTTGAATTACAGTCTGTAAGTAGGAATGTCCTTTGTGCAACTACTAATAGTCAGCATGCATCCTTAGAACATATCGATAAAATTTGTAATAAGGATGATTTTATTGACGACATTGTAATTGGTAGTGTTTTTCGATCTAATGATGAATTACAATTTAAACTGGACGTTTTTGCTATCAATAGGAATTCTGAGTACAATGTTAAGAAATCTACTACAAAGCTATTATCTATACCATGCACGGAAGAGGGATGCAAATGGGCCCTACGTGCAAGAAGAATCAAAGGTTCGGATACCTTTCTCATCTCAACATTTTCTGAGAATCATAGTTGCGAACGACCGACACTTACACATGACAATCGACAAGCCGGTAGTTCGGTGGTGGGTCAGTTGATAAAGTCCAACTTTGAGGAGGTCAGCTGTCGTTACAAGCCTAAAGATATTATGAATGATATGCGAAAGAATTATGGTGTCAATGTCCGATATGAAAAGGCATGGGGAAGTACAAGGGTTTGGTTTTTCGAGCGGGTTAAGATTTGTATAGGTGACATAAACGGTTTGGTTTTTGTATTTGACCGGCATCAAAGTATCACAAACTCCATGGTAACGGTGTTTCCTGATGCAACGCACGTCACATGCAAACTAACCGGATTCCCAAGAGTCTATAAATATTTGGAAGACATCAGATTCAACAAGTGGGCTCGTGCATATCAACCTGGAATGAGGTATAACCAAATGACCTCAAATCTTGCCAAATCCATGAATGCGATACTTGTTCATGCTCGTACTTTGCCAATAACAGCTCTGAAAATTGTCGAGCTCTATTACAACAATGGTTTTATGAGAGGCGGACAGCTGCCTCTAGTCGAGGAACAATTCTTACTAAATATGCAGATGATATTCTTAAAGAAGAGGCAGAATAAGCTCGATATCATCATGTCAGGCCAATTGATCGGTTCAAATTCAAAGTGCATGATGGTTCCAATAGGTACCGAATCGAAACCCTCATACTTGGTTACGTCGAATCCGTGTATCCACTCGGAGATGAGGAAGATTAGATTTTACTCGATGAATACGTGTCGAAGACGATTAAGCCACCAAAATTTGTTTCTCGTGTTGGACGTCGCCAAACTGTGTGAATACCATCAGTCGGGGAAGTCCGACAGTTACACAAATGCGGGCGATGTGGAAACGTTGGACACAACCTCTCTACTACCAAACTACTGCGGTGCCAATGTAATCCTAAGAATTCGCCATGGTGTCATTGGTAGACCTCAAGGAGTCCCAGACAACGATCTCACCTTCAACGGAGTCTATGCATATCATAACCCAATGGTTGCTGTTGACATTGAAGGGTAA

Protein sequence

MHSPIRTVNPPSSVQFMTPLTDNVVPCNLGKDEQEHFSHDLSSRTPVVELQSVSRNVLCATTNSQHASLEHIDKICNKDDFIDDIVIGSVFRSNDELQFKLDVFAINRNSEYNVKKSTTKLLSIPCTEEGCKWALRARRIKGSDTFLISTFSENHSCERPTLTHDNRQAGSSVVGQLIKSNFEEVSCRYKPKDIMNDMRKNYGVNVRYEKAWGSTRVWFFERVKICIGDINGLVFVFDRHQSITNSMVTVFPDATHVTCKLTGFPRVYKYLEDIRFNKWARAYQPGMRYNQMTSNLAKSMNAILVHARTLPITALKIVELYYNNGFMRGGQLPLVEEQFLLNMQMIFLKKRQNKLDIIMSGQLIGSNSKCMMVPIGTESKPSYLVTSNPCIHSEMRKIRFYSMNTCRRRLSHQNLFLVLDVAKLCEYHQSGKSDSYTNAGDVETLDTTSLLPNYCGANVILRIRHGVIGRPQGVPDNDLTFNGVYAYHNPMVAVDIEG

Homology

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BLAST of Moc04g08560.1 vs. NCBI nr
Match: XP_022154803.1 (uncharacterized protein LOC111021969 [Momordica charantia])

HSP 1 Score: 381.3 bits (978), Expect = 1.2e-101
Identity = 225/504 (44.64%), Postives = 261/504 (51.79%), Query Frame = 0


Query: 1   MHSPIRTVNPPSSVQFMTPLTDNVVPCNLGKDEQEHFSH--------------------- 60
           +HS IRTV+PPSSV+FMTPLTDNVVPCNLG DE EHF                       
Sbjct: 150 VHSSIRTVHPPSSVKFMTPLTDNVVPCNLGDDEHEHFGQWDDVGDDEDHEYRMVGDDLED 209

Query: 61  ----------------------DLSSRTPVVELQSVSRNVLCATTNSQHASLEHIDKICN 120
                                 D S RTPVVE+QSVSRN  CAT    HASLE +D I  
Sbjct: 210 DDDYQEIESEDDNEADEPVYDGDPSLRTPVVEVQSVSRNAPCATVEGVHASLEQMDTIGC 269

Query: 121 KDDFIDDIVIGSVFRSNDELQFKLDVFAINRNSEYNVKKSTTKLLSIPCTEEGCKWALRA 180
            DD +DDI +GS+FRS DEL+F L VFAI +N E+ VKKST  LLS+ C EEGC+WALRA
Sbjct: 270 DDDLVDDIALGSLFRSKDELRFTLAVFAIQKNFEFQVKKSTRSLLSVACKEEGCRWALRA 329

Query: 181 RRIKGSDTFLISTFSENHSCERPTLTHDNRQAGSSVVGQLIKSNFEEVSCRYKPKDIMND 240
           R+IKGSDTFLISTFSE+H  ER TL HD++QAGS VVGQLIK+N E++S RY+P+DI+ D
Sbjct: 330 RKIKGSDTFLISTFSEDHIHERETLRHDHKQAGSWVVGQLIKTNLEDISRRYRPRDIITD 389

Query: 241 MRKNYGVNVRYEKAWGSTRV---------------------------------------- 300
           MR+NYGVN RYEK W +  V                                        
Sbjct: 390 MRRNYGVNTRYEKTWRAREVALSLLMGSPKESYTTLHKYGAALKAANVGTVFQIKLEDDT 449

Query: 301 ------------------------------------------------------------ 316
                                                                       
Sbjct: 450 YFKYAFMALGCSIRGFGSCIRQVLVVDGAHLKGKYRGVLLTASSVDGNNQIYPLAFGVVD 509

[Close]

BLAST of Moc04g08560.1 vs. NCBI nr
Match: XP_022157237.1 (protein FAR-RED ELONGATED HYPOCOTYL 3-like [Momordica charantia])

HSP 1 Score: 339.0 bits (868), Expect = 7.1e-89
Identity = 197/390 (50.51%), Postives = 216/390 (55.38%), Query Frame = 0


Query: 72  IDKICNKDDFIDDIVIGSVFRSNDELQFKLDVFAINRNSEYNVKKSTTKLLSIPCTEEGC 131
           +D I N+D F+ DI +GSVFRS DEL+FKL VFAI +N EY VKKSTTKLLS+ CTE GC
Sbjct: 1   MDTIGNEDGFVHDIAVGSVFRSKDELRFKLAVFAITKNFEYKVKKSTTKLLSVACTENGC 60

Query: 132 KWALRARRIKGSDTFLISTFSENHSCERPTLTHDNRQAGSSVVGQLIKSNFEEVSCRYKP 191
           KWALR RRIKGS+TFLISTFSENHSCER TL HD+RQAGS VVGQLIKSNFEEVS RY+P
Sbjct: 61  KWALRVRRIKGSNTFLISTFSENHSCERSTLAHDHRQAGSWVVGQLIKSNFEEVSRRYRP 120

Query: 192 KDIMNDMRKNYGVNVRYEKA-----------WGSTR------------------------ 251
           KDI+NDM+KNYGVNVRYEKA            GS R                        
Sbjct: 121 KDIVNDMQKNYGVNVRYEKARRAKEVALGLLMGSPRESYSTLHKYGEALKAVNEGTVFHM 180

Query: 252 ------------------------------------------------------------ 311
                                                                       
Sbjct: 181 KLEDDTFFKYAFMALGCSIRGFGSCIRPILVVDGAHLKGKYKGVLLTASSIDGNNQIYHL 240

Query: 312 -------------VWFFERVKICIGDINGLVFVFDRHQSITNSMVTVFPDATHVTC---- 316
                         WF ERVKICIGDINGLVF+ DRHQSITNS+ TVFPDA HVTC    
Sbjct: 241 AFGVVDKARDDSWTWFIERVKICIGDINGLVFISDRHQSITNSVATVFPDAAHVTCMHHL 300

[Close]

BLAST of Moc04g08560.1 vs. NCBI nr
Match: XP_022154930.1 (uncharacterized protein LOC111022077 [Momordica charantia])

HSP 1 Score: 241.9 bits (616), Expect = 1.2e-59
Identity = 152/417 (36.45%), Postives = 193/417 (46.28%), Query Frame = 0


Query: 46  PVVELQSVSRNVLCATTNS-QHASLEHIDKICNKDDFIDDIVIGSVFRSNDELQFKLDVF 105
           PV E+QSVS N    T       S ++I     K D + DIV+G +FRS DEL+FKL V 
Sbjct: 84  PVFEVQSVSANACTHTVQELPRCSTQNITSTDAK-DCVGDIVVGGIFRSKDELRFKLLVL 143

Query: 106 AINRNSEYNVKKSTTKLLSIPCTEEGCKWALRARRIKGSDTFLISTFSENHSCERPTLTH 165
           A+  N E+ VKKST  L  + C E GCKW L A RI+G+D+F IS +++ H+C +  L H
Sbjct: 144 AMKLNFEFRVKKSTKTLYIVGCIEVGCKWGLHANRIRGADSFTISKYTDVHNCTQEVLNH 203

Query: 166 DNRQAGSSVVGQLIKSNFEEVSCRYKPKDIMNDMRKNYGVNVRYEKAWGSTRV------- 225
           D+RQA S VVGQL+K+N E+VS  Y+PKDIM DMRK YGVN+RYEKAW +  V       
Sbjct: 204 DHRQARSWVVGQLLKANLEDVSRLYRPKDIMTDMRKQYGVNIRYEKAWRAKEVALNILVG 263

Query: 226 ------------------------------------------------------------ 285
                                                                       
Sbjct: 264 SPKESYNCLRRYEEALKVVNTGTIFEMELEEDKYFKYAFMALGCCIRGFSSCIRPVLVID 323

Query: 286 -----------------------------------------WFFERVKICIGDINGLVFV 316
                                                    WF ER+K CIG+++GL+FV
Sbjct: 324 GAHLKGKYKGVILTASSVDGNNQIYPIAFGIVDIESBASWSWFLERLKHCIGEVDGLLFV 383

[Close]

BLAST of Moc04g08560.1 vs. NCBI nr
Match: XP_022156943.1 (protein FAR-RED ELONGATED HYPOCOTYL 3-like [Momordica charantia])

HSP 1 Score: 240.0 bits (611), Expect = 4.5e-59
Identity = 142/409 (34.72%), Postives = 189/409 (46.21%), Query Frame = 0


Query: 53  VSRNVLCATTNSQHASLEHIDKICNKDDFIDDIVIGSVFRSNDELQFKLDVFAINRNSEY 112
           +S N  C       + L     I NK D++ +I +  +FRS ++L+FKL V A+  N E+
Sbjct: 1   MSGNAPCQIVEEAVSHLMQNIIIANKSDYVCEIAVKGIFRSKEKLRFKLSVLAMKPNFEF 60

Query: 113 NVKKSTTKLLSIPCTEEGCKWALRARRIKGSDTFLISTFSENHSCERPTLTHDNRQAGSS 172
            VKKST  L ++ CT++GCKW LR + I+  D+F+IS F++ H C+R  L HD+RQA S 
Sbjct: 61  KVKKSTKTLYTVGCTKQGCKWGLRVKSIREGDSFIISKFNDVHKCKRDVLNHDHRQAQSW 120

Query: 173 VVGQLIKSNFEEVSCRYKPKDIMNDMRKNYGVNVRYEKAWGSTRV--------------- 232
           VVGQL+KSN E+VS +Y+PKDI+NDMRKNYGVN+RYEKAW +  V               
Sbjct: 121 VVGQLLKSNLEDVSRQYRPKDIINDMRKNYGVNIRYEKAWRAKNVCLNLLMGSPKHSYTL 180

Query: 233 ------------------------------------------------------------ 292
                                                                       
Sbjct: 181 LRKYGEALKVVNASIIFEVELEEDKYFNYAFMALGCCIRGFSSCIRPVLVIDDAHLKGKY 240

Query: 293 ---------------------------------WFFERVKICIGDINGLVFVFDRHQSIT 316
                                            WF   VK CIG+++GL+FV D+H  IT
Sbjct: 241 RGVIHIVFSVDDNNQIYPIAFGIVDRESDQSWTWFLNMVKTCIGEVDGLLFVSDQHVCIT 300

[Close]

BLAST of Moc04g08560.1 vs. NCBI nr
Match: XP_022156802.1 (uncharacterized protein LOC111023635 [Momordica charantia])

HSP 1 Score: 196.1 bits (497), Expect = 7.4e-46
Identity = 118/357 (33.05%), Postives = 154/357 (43.14%), Query Frame = 0


Query: 77  NKDDFIDDIVIGSVFRSNDELQFKLDVFAINRNSEYNVKKSTTKLLSIPCTEEGCKWALR 136
           N  DFI +I +  +FRS +EL+FKL V A+  N ++ VKKST  L ++ CTE+GCKW LR
Sbjct: 180 NGSDFIGEIAVKGIFRSKEELRFKLSVLAMKLNFKFKVKKSTKTLFTVGCTEQGCKWGLR 239

Query: 137 ARRIKGSDTFLISTFSENHSCERPTLTHDNRQAGSSVVGQLIKSNFEEVSCRYKPKDIMN 196
           A+ I+G D+F+IS F++ H C+R  L HD+RQA S VVGQL+KSN E+VS +Y+PKDI+N
Sbjct: 240 AKSIQGGDSFIISKFNDFHKCKREVLNHDHRQARSWVVGQLVKSNVEDVSRQYRPKDIIN 299

Query: 197 DMRKNYGVNVRYEKAWGSTRV--------------------------------------- 256
           DMR+NYGVN+RYEKAW +  V                                       
Sbjct: 300 DMRRNYGVNIRYEKAWRAKNVALNLLMGPPKHSYTLLRKYGEALKAVNSCTVFGVELEED 359

Query: 257 ------------------------------------------------------------ 288
                                                                       
Sbjct: 360 KYFKYAFMALSCCIRGLSSCIRPVLVIDGAHLKGKYRGVILIASXVDGNNQXYPLAFGLV 419

[Close]

BLAST of Moc04g08560.1 vs. ExPASy TrEMBL
Match: A0A6J1DLB0 (uncharacterized protein LOC111021969 OS=Momordica charantia OX=3673 GN=LOC111021969 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 6.0e-102
Identity = 225/504 (44.64%), Postives = 261/504 (51.79%), Query Frame = 0


Query: 1   MHSPIRTVNPPSSVQFMTPLTDNVVPCNLGKDEQEHFSH--------------------- 60
           +HS IRTV+PPSSV+FMTPLTDNVVPCNLG DE EHF                       
Sbjct: 150 VHSSIRTVHPPSSVKFMTPLTDNVVPCNLGDDEHEHFGQWDDVGDDEDHEYRMVGDDLED 209

Query: 61  ----------------------DLSSRTPVVELQSVSRNVLCATTNSQHASLEHIDKICN 120
                                 D S RTPVVE+QSVSRN  CAT    HASLE +D I  
Sbjct: 210 DDDYQEIESEDDNEADEPVYDGDPSLRTPVVEVQSVSRNAPCATVEGVHASLEQMDTIGC 269

Query: 121 KDDFIDDIVIGSVFRSNDELQFKLDVFAINRNSEYNVKKSTTKLLSIPCTEEGCKWALRA 180
            DD +DDI +GS+FRS DEL+F L VFAI +N E+ VKKST  LLS+ C EEGC+WALRA
Sbjct: 270 DDDLVDDIALGSLFRSKDELRFTLAVFAIQKNFEFQVKKSTRSLLSVACKEEGCRWALRA 329

Query: 181 RRIKGSDTFLISTFSENHSCERPTLTHDNRQAGSSVVGQLIKSNFEEVSCRYKPKDIMND 240
           R+IKGSDTFLISTFSE+H  ER TL HD++QAGS VVGQLIK+N E++S RY+P+DI+ D
Sbjct: 330 RKIKGSDTFLISTFSEDHIHERETLRHDHKQAGSWVVGQLIKTNLEDISRRYRPRDIITD 389

Query: 241 MRKNYGVNVRYEKAWGSTRV---------------------------------------- 300
           MR+NYGVN RYEK W +  V                                        
Sbjct: 390 MRRNYGVNTRYEKTWRAREVALSLLMGSPKESYTTLHKYGAALKAANVGTVFQIKLEDDT 449

Query: 301 ------------------------------------------------------------ 316
                                                                       
Sbjct: 450 YFKYAFMALGCSIRGFGSCIRQVLVVDGAHLKGKYRGVLLTASSVDGNNQIYPLAFGVVD 509

[Close]

BLAST of Moc04g08560.1 vs. ExPASy TrEMBL
Match: A0A6J1DU12 (protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Momordica charantia OX=3673 GN=LOC111023994 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 3.4e-89
Identity = 197/390 (50.51%), Postives = 216/390 (55.38%), Query Frame = 0


Query: 72  IDKICNKDDFIDDIVIGSVFRSNDELQFKLDVFAINRNSEYNVKKSTTKLLSIPCTEEGC 131
           +D I N+D F+ DI +GSVFRS DEL+FKL VFAI +N EY VKKSTTKLLS+ CTE GC
Sbjct: 1   MDTIGNEDGFVHDIAVGSVFRSKDELRFKLAVFAITKNFEYKVKKSTTKLLSVACTENGC 60

Query: 132 KWALRARRIKGSDTFLISTFSENHSCERPTLTHDNRQAGSSVVGQLIKSNFEEVSCRYKP 191
           KWALR RRIKGS+TFLISTFSENHSCER TL HD+RQAGS VVGQLIKSNFEEVS RY+P
Sbjct: 61  KWALRVRRIKGSNTFLISTFSENHSCERSTLAHDHRQAGSWVVGQLIKSNFEEVSRRYRP 120

Query: 192 KDIMNDMRKNYGVNVRYEKA-----------WGSTR------------------------ 251
           KDI+NDM+KNYGVNVRYEKA            GS R                        
Sbjct: 121 KDIVNDMQKNYGVNVRYEKARRAKEVALGLLMGSPRESYSTLHKYGEALKAVNEGTVFHM 180

Query: 252 ------------------------------------------------------------ 311
                                                                       
Sbjct: 181 KLEDDTFFKYAFMALGCSIRGFGSCIRPILVVDGAHLKGKYKGVLLTASSIDGNNQIYHL 240

Query: 312 -------------VWFFERVKICIGDINGLVFVFDRHQSITNSMVTVFPDATHVTC---- 316
                         WF ERVKICIGDINGLVF+ DRHQSITNS+ TVFPDA HVTC    
Sbjct: 241 AFGVVDKARDDSWTWFIERVKICIGDINGLVFISDRHQSITNSVATVFPDAAHVTCMHHL 300

[Close]

BLAST of Moc04g08560.1 vs. ExPASy TrEMBL
Match: A0A6J1DL12 (uncharacterized protein LOC111022077 OS=Momordica charantia OX=3673 GN=LOC111022077 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 5.7e-60
Identity = 152/417 (36.45%), Postives = 193/417 (46.28%), Query Frame = 0


Query: 46  PVVELQSVSRNVLCATTNS-QHASLEHIDKICNKDDFIDDIVIGSVFRSNDELQFKLDVF 105
           PV E+QSVS N    T       S ++I     K D + DIV+G +FRS DEL+FKL V 
Sbjct: 84  PVFEVQSVSANACTHTVQELPRCSTQNITSTDAK-DCVGDIVVGGIFRSKDELRFKLLVL 143

Query: 106 AINRNSEYNVKKSTTKLLSIPCTEEGCKWALRARRIKGSDTFLISTFSENHSCERPTLTH 165
           A+  N E+ VKKST  L  + C E GCKW L A RI+G+D+F IS +++ H+C +  L H
Sbjct: 144 AMKLNFEFRVKKSTKTLYIVGCIEVGCKWGLHANRIRGADSFTISKYTDVHNCTQEVLNH 203

Query: 166 DNRQAGSSVVGQLIKSNFEEVSCRYKPKDIMNDMRKNYGVNVRYEKAWGSTRV------- 225
           D+RQA S VVGQL+K+N E+VS  Y+PKDIM DMRK YGVN+RYEKAW +  V       
Sbjct: 204 DHRQARSWVVGQLLKANLEDVSRLYRPKDIMTDMRKQYGVNIRYEKAWRAKEVALNILVG 263

Query: 226 ------------------------------------------------------------ 285
                                                                       
Sbjct: 264 SPKESYNCLRRYEEALKVVNTGTIFEMELEEDKYFKYAFMALGCCIRGFSSCIRPVLVID 323

Query: 286 -----------------------------------------WFFERVKICIGDINGLVFV 316
                                                    WF ER+K CIG+++GL+FV
Sbjct: 324 GAHLKGKYKGVILTASSVDGNNQIYPIAFGIVDIESDASWSWFLERLKHCIGEVDGLLFV 383

[Close]

BLAST of Moc04g08560.1 vs. ExPASy TrEMBL
Match: A0A6J1DS25 (protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Momordica charantia OX=3673 GN=LOC111023776 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.2e-59
Identity = 142/409 (34.72%), Postives = 189/409 (46.21%), Query Frame = 0


Query: 53  VSRNVLCATTNSQHASLEHIDKICNKDDFIDDIVIGSVFRSNDELQFKLDVFAINRNSEY 112
           +S N  C       + L     I NK D++ +I +  +FRS ++L+FKL V A+  N E+
Sbjct: 1   MSGNAPCQIVEEAVSHLMQNIIIANKSDYVCEIAVKGIFRSKEKLRFKLSVLAMKPNFEF 60

Query: 113 NVKKSTTKLLSIPCTEEGCKWALRARRIKGSDTFLISTFSENHSCERPTLTHDNRQAGSS 172
            VKKST  L ++ CT++GCKW LR + I+  D+F+IS F++ H C+R  L HD+RQA S 
Sbjct: 61  KVKKSTKTLYTVGCTKQGCKWGLRVKSIREGDSFIISKFNDVHKCKRDVLNHDHRQAQSW 120

Query: 173 VVGQLIKSNFEEVSCRYKPKDIMNDMRKNYGVNVRYEKAWGSTRV--------------- 232
           VVGQL+KSN E+VS +Y+PKDI+NDMRKNYGVN+RYEKAW +  V               
Sbjct: 121 VVGQLLKSNLEDVSRQYRPKDIINDMRKNYGVNIRYEKAWRAKNVCLNLLMGSPKHSYTL 180

Query: 233 ------------------------------------------------------------ 292
                                                                       
Sbjct: 181 LRKYGEALKVVNASIIFEVELEEDKYFNYAFMALGCCIRGFSSCIRPVLVIDDAHLKGKY 240

Query: 293 ---------------------------------WFFERVKICIGDINGLVFVFDRHQSIT 316
                                            WF   VK CIG+++GL+FV D+H  IT
Sbjct: 241 RGVIHIVFSVDDNNQIYPIAFGIVDRESDQSWTWFLNMVKTCIGEVDGLLFVSDQHVCIT 300

[Close]

BLAST of Moc04g08560.1 vs. ExPASy TrEMBL
Match: A0A6J1DSY0 (uncharacterized protein LOC111023635 OS=Momordica charantia OX=3673 GN=LOC111023635 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 3.6e-46
Identity = 118/357 (33.05%), Postives = 154/357 (43.14%), Query Frame = 0


Query: 77  NKDDFIDDIVIGSVFRSNDELQFKLDVFAINRNSEYNVKKSTTKLLSIPCTEEGCKWALR 136
           N  DFI +I +  +FRS +EL+FKL V A+  N ++ VKKST  L ++ CTE+GCKW LR
Sbjct: 180 NGSDFIGEIAVKGIFRSKEELRFKLSVLAMKLNFKFKVKKSTKTLFTVGCTEQGCKWGLR 239

Query: 137 ARRIKGSDTFLISTFSENHSCERPTLTHDNRQAGSSVVGQLIKSNFEEVSCRYKPKDIMN 196
           A+ I+G D+F+IS F++ H C+R  L HD+RQA S VVGQL+KSN E+VS +Y+PKDI+N
Sbjct: 240 AKSIQGGDSFIISKFNDFHKCKREVLNHDHRQARSWVVGQLVKSNVEDVSRQYRPKDIIN 299

Query: 197 DMRKNYGVNVRYEKAWGSTRV--------------------------------------- 256
           DMR+NYGVN+RYEKAW +  V                                       
Sbjct: 300 DMRRNYGVNIRYEKAWRAKNVALNLLMGPPKHSYTLLRKYGEALKAVNSCTVFGVELEED 359

Query: 257 ------------------------------------------------------------ 288
                                                                       
Sbjct: 360 KYFKYAFMALSCCIRGLSSCIRPVLVIDGAHLKGKYRGVILIASXVDGNNQXYPLAFGLV 419

The following BLAST results are available for this feature:

BLAST of Moc04g08560.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154803.1	1.2e-101	44.64	uncharacterized protein LOC111021969 [Momordica charantia]	[more]
XP_022157237.1	7.1e-89	50.51	protein FAR-RED ELONGATED HYPOCOTYL 3-like [Momordica charantia]	[more]
XP_022154930.1	1.2e-59	36.45	uncharacterized protein LOC111022077 [Momordica charantia]	[more]
XP_022156943.1	4.5e-59	34.72	protein FAR-RED ELONGATED HYPOCOTYL 3-like [Momordica charantia]	[more]
XP_022156802.1	7.4e-46	33.05	uncharacterized protein LOC111023635 [Momordica charantia]	[more]

BLAST of Moc04g08560.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc04g08560.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DLB0	6.0e-102	44.64	uncharacterized protein LOC111021969 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A6J1DU12	3.4e-89	50.51	protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1DL12	5.7e-60	36.45	uncharacterized protein LOC111022077 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DS25	2.2e-59	34.72	protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1DSY0	3.6e-46	33.05	uncharacterized protein LOC111023635 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]

BLAST of Moc04g08560.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004332	Transposase, MuDR, plant	PFAM	PF03108	DBD_Tnp_Mut	coord: 86..148 e-value: 4.1E-8 score: 33.1
None	No IPR available	PANTHER	PTHR31973:SF106	OS09G0268600 PROTEIN	coord: 87..214
None	No IPR available	PANTHER	PTHR31973	POLYPROTEIN, PUTATIVE-RELATED	coord: 87..214

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc04g08560	Moc04g08560	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc04g08560.1.exon1	Moc04g08560.1.exon1	exon
Moc04g08560.1.exon2	Moc04g08560.1.exon2	exon
Moc04g08560.1.exon3	Moc04g08560.1.exon3	exon
Moc04g08560.1.exon4	Moc04g08560.1.exon4	exon
Moc04g08560.1.exon5	Moc04g08560.1.exon5	exon
Moc04g08560.1.exon6	Moc04g08560.1.exon6	exon
Moc04g08560.1.exon7	Moc04g08560.1.exon7	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc04g08560.1	cds.Moc04g08560.1	CDS
cds.Moc04g08560.1	cds.Moc04g08560.1_2	CDS
cds.Moc04g08560.1	cds.Moc04g08560.1_3	CDS
cds.Moc04g08560.1	cds.Moc04g08560.1_4	CDS
cds.Moc04g08560.1	cds.Moc04g08560.1_5	CDS
cds.Moc04g08560.1	cds.Moc04g08560.1_6	CDS
cds.Moc04g08560.1	cds.Moc04g08560.1_7	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc04g08560.1	Moc04g08560.1-protein	polypeptide