Moc03g04760.1 (mRNA) Bitter gourd (OHB3-1) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCATCGCCGCCACCGTCAGTGTTATCTCCGCCGCCGATGCCGTTAAACGCCGTCAGCCACAGTCTCTTTGGGGAATTGCCAAAACACGTTCAGATTTTGTGTGTGGTTGCTATGTTCCTCCTCGTTATACTCTACGTCTTCATTCTCAGGCTCATTCTCGACAGAAGCTGCGGATCCAACGGCGGAGAATTGCCGGAGGCGTTACCGCAGAAGAGGTTGCAGATTGAAGCTCCGATTTTCGCTTACGGCGGATCGGGCGACGACGACGAAGAATGTGCAATTTGCCTTAGCAAATTTGAACAAGGAGAGAAGTGCCGCAAAATGAGTAAGTGCGACCACGTGTTTCACCGGGACTGTATTGACCGGTGGCTGAAGGCGGAGCGCCACTGCCCGCTTTGCCGGACCAGTATTTGCATCGTCGTTCACGGTGGAGACAACATCGTCCCTCCAGCCGTCCCAAATGCTTGA ATGTCATCGCCGCCACCGTCAGTGTTATCTCCGCCGCCGATGCCGTTAAACGCCGTCAGCCACAGTCTCTTTGGGGAATTGCCAAAACACGTTCAGATTTTGTGTGTGGTTGCTATGTTCCTCCTCGTTATACTCTACGTCTTCATTCTCAGGCTCATTCTCGACAGAAGCTGCGGATCCAACGGCGGAGAATTGCCGGAGGCGTTACCGCAGAAGAGGTTGCAGATTGAAGCTCCGATTTTCGCTTACGGCGGATCGGGCGACGACGACGAAGAATGTGCAATTTGCCTTAGCAAATTTGAACAAGGAGAGAAGTGCCGCAAAATGAGTAAGTGCGACCACGTGTTTCACCGGGACTGTATTGACCGGTGGCTGAAGGCGGAGCGCCACTGCCCGCTTTGCCGGACCAGTATTTGCATCGTCGTTCACGGTGGAGACAACATCGTCCCTCCAGCCGTCCCAAATGCTTGA ATGTCATCGCCGCCACCGTCAGTGTTATCTCCGCCGCCGATGCCGTTAAACGCCGTCAGCCACAGTCTCTTTGGGGAATTGCCAAAACACGTTCAGATTTTGTGTGTGGTTGCTATGTTCCTCCTCGTTATACTCTACGTCTTCATTCTCAGGCTCATTCTCGACAGAAGCTGCGGATCCAACGGCGGAGAATTGCCGGAGGCGTTACCGCAGAAGAGGTTGCAGATTGAAGCTCCGATTTTCGCTTACGGCGGATCGGGCGACGACGACGAAGAATGTGCAATTTGCCTTAGCAAATTTGAACAAGGAGAGAAGTGCCGCAAAATGAGTAAGTGCGACCACGTGTTTCACCGGGACTGTATTGACCGGTGGCTGAAGGCGGAGCGCCACTGCCCGCTTTGCCGGACCAGTATTTGCATCGTCGTTCACGGTGGAGACAACATCGTCCCTCCAGCCGTCCCAAATGCTTGA MSSPPPSVLSPPPMPLNAVSHSLFGELPKHVQILCVVAMFLLVILYVFILRLILDRSCGSNGGELPEALPQKRLQIEAPIFAYGGSGDDDEECAICLSKFEQGEKCRKMSKCDHVFHRDCIDRWLKAERHCPLCRTSICIVVHGGDNIVPPAVPNA Homology
BLAST of Moc03g04760.1 vs. NCBI nr
Match: XP_022158251.1 (RING-H2 finger protein ATL1-like [Momordica charantia]) HSP 1 Score: 325.1 bits (832), Expect = 3.3e-85 Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0
BLAST of Moc03g04760.1 vs. NCBI nr
Match: XP_022158250.1 (E3 ubiquitin-protein ligase RING1-like [Momordica charantia]) HSP 1 Score: 146.0 bits (367), Expect = 2.8e-31 Identity = 68/142 (47.89%), Postives = 98/142 (69.01%), Query Frame = 0
BLAST of Moc03g04760.1 vs. NCBI nr
Match: XP_011659772.1 (RING-H2 finger protein ATL39 [Cucumis sativus]) HSP 1 Score: 145.6 bits (366), Expect = 3.6e-31 Identity = 77/140 (55.00%), Postives = 93/140 (66.43%), Query Frame = 0
BLAST of Moc03g04760.1 vs. NCBI nr
Match: XP_008457567.1 (PREDICTED: RING-H2 finger protein ATL63-like [Cucumis melo] >TYJ97405.1 RING-H2 finger protein ATL63-like [Cucumis melo var. makuwa]) HSP 1 Score: 137.5 bits (345), Expect = 9.8e-29 Identity = 72/151 (47.68%), Postives = 95/151 (62.91%), Query Frame = 0
BLAST of Moc03g04760.1 vs. NCBI nr
Match: KAA0067739.1 (RING-H2 finger protein ATL64-like [Cucumis melo var. makuwa]) HSP 1 Score: 137.5 bits (345), Expect = 9.8e-29 Identity = 71/149 (47.65%), Postives = 94/149 (63.09%), Query Frame = 0
BLAST of Moc03g04760.1 vs. ExPASy Swiss-Prot
Match: Q9P7E1 (Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBP4H10.07 PE=1 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 8.4e-15 Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 0
BLAST of Moc03g04760.1 vs. ExPASy Swiss-Prot
Match: Q8RXX9 (E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2) HSP 1 Score: 73.9 bits (180), Expect = 1.7e-12 Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 0
BLAST of Moc03g04760.1 vs. ExPASy Swiss-Prot
Match: Q9SRM0 (RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 2.3e-12 Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 0
BLAST of Moc03g04760.1 vs. ExPASy Swiss-Prot
Match: P93823 (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 5.1e-12 Identity = 56/178 (31.46%), Postives = 87/178 (48.88%), Query Frame = 0
BLAST of Moc03g04760.1 vs. ExPASy Swiss-Prot
Match: Q9LRB7 (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 5.1e-12 Identity = 30/88 (34.09%), Postives = 50/88 (56.82%), Query Frame = 0
BLAST of Moc03g04760.1 vs. ExPASy TrEMBL
Match: A0A6J1E0E9 (RING-H2 finger protein ATL1-like OS=Momordica charantia OX=3673 GN=LOC111024786 PE=4 SV=1) HSP 1 Score: 325.1 bits (832), Expect = 1.6e-85 Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0
BLAST of Moc03g04760.1 vs. ExPASy TrEMBL
Match: A0A0A0K790 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G387140 PE=4 SV=1) HSP 1 Score: 146.0 bits (367), Expect = 1.3e-31 Identity = 80/150 (53.33%), Postives = 100/150 (66.67%), Query Frame = 0
BLAST of Moc03g04760.1 vs. ExPASy TrEMBL
Match: A0A6J1DVB5 (RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC111024784 PE=3 SV=1) HSP 1 Score: 146.0 bits (367), Expect = 1.3e-31 Identity = 68/142 (47.89%), Postives = 98/142 (69.01%), Query Frame = 0
BLAST of Moc03g04760.1 vs. ExPASy TrEMBL
Match: A0A5D3BG26 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002250 PE=3 SV=1) HSP 1 Score: 137.5 bits (345), Expect = 4.8e-29 Identity = 72/151 (47.68%), Postives = 95/151 (62.91%), Query Frame = 0
BLAST of Moc03g04760.1 vs. ExPASy TrEMBL
Match: A0A5A7VRG5 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00590 PE=3 SV=1) HSP 1 Score: 137.5 bits (345), Expect = 4.8e-29 Identity = 71/149 (47.65%), Postives = 94/149 (63.09%), Query Frame = 0
BLAST of Moc03g04760.1 vs. TAIR 10
Match: AT3G05200.1 (RING/U-box superfamily protein ) HSP 1 Score: 73.9 bits (180), Expect = 1.2e-13 Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 0
BLAST of Moc03g04760.1 vs. TAIR 10
Match: AT3G11110.1 (RING/U-box superfamily protein ) HSP 1 Score: 73.6 bits (179), Expect = 1.6e-13 Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 0
BLAST of Moc03g04760.1 vs. TAIR 10
Match: AT1G04360.1 (RING/U-box superfamily protein ) HSP 1 Score: 72.4 bits (176), Expect = 3.6e-13 Identity = 56/178 (31.46%), Postives = 87/178 (48.88%), Query Frame = 0
BLAST of Moc03g04760.1 vs. TAIR 10
Match: AT2G47560.1 (RING/U-box superfamily protein ) HSP 1 Score: 72.4 bits (176), Expect = 3.6e-13 Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 0
BLAST of Moc03g04760.1 vs. TAIR 10
Match: AT3G62690.1 (AtL5 ) HSP 1 Score: 72.0 bits (175), Expect = 4.7e-13 Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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