MS028466.1 (mRNA) Bitter gourd (TR) v1

Overview
NameMS028466.1
TypemRNA
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold41: 609563 .. 614473 (+)
Sequence length735
RNA-Seq ExpressionMS028466.1
SyntenyMS028466.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATGCTAGGTTTTTCTAACAACAATCCCATTCGGGTGGACACTTCTTCGGAGGATGGTCCTGCTTTTCCGGAGGGGCATCCCTTCAACGACAATGAGGACTACCTTCTTTCCACTGAGGAGGATGCCTCTTTGGAGGAGGAGGATTTCCTTCTTCCAATGGAGTGTGTCCCTCTACAGAGGAGAAAGACGAGGAAGGGGATGGGGCGGAGGACGGGCACGGCGAAGGTGAGGAGGGTGAACCTTCAAATGCAGCGACAGACTTTTTGGAGCTCGGGGTTCCCTCTTCCTGGGCTTCTCCACCCTTATGCAACTGATTAAGAACGAACTCGTTGCACGGGTCTGTGAACTCGAACGGGACCTCCTCGAGATGCGGGAGGAGTTCGTCGATGCCGAGAACGGTGGTCGCTTTGCTGTTGAGATGGTCTGGGAGGTCCTCAAAGGGATGGAGGAGACAGAGTAGGCCTACCAATCCTTGTTCCACACGGTGAGGCGTCTGGAGCTGTTTCAGGTTGGCTAGAGCAGACATATTATAGAAGGCCTGGATCTGTTTCGAATTGGCTTCATCCCTCGCTGGTGTACTATGAAGCTTAGGAACTTCCCCAATCTTACGCCGAAGGCACACTTAGCCGGATTTAATCTAATAACGTAGTGGCGCATGACCTGGAAGGCCTCAGAGAGGTCGCCCTTGTGTTGTTTTGCAGTCCGGCTCTTGACTAGCATATCGTCAACGTACATCTCCATGTTCTTTTTGATCTGCGACGCGAACATCTTGGTAACCATCCTTTGGTAGGTTGCTTCAGCGCTTTTTGATCTGAATGGCATGACCTTGTAGCAGAACAACCCTTGCTCAGTAATGAAAGAGGTGTGCTCCTGATCGACCGGATGCATTTTGATTTGGTTGTATCTCGAATAGGCGTCCATGAATGTCAATAACTCATGCCCCGCCGTGCCATCCATAAGCTGGTCGATTCATGGCAACGAAATCTATCCTTAGGGCAGCCTTGTTCAAATTGGTGAAATCTACGTACATTCGTCATTTCCCATTGGCCTTTTTTATCAGGACTACGTTGGATAGCTTGTCGGGGTAATGGACTTCTCGAACAAAATTAGCCTTCAATAGCTTGGCAAATTTTTTTGTTATGGTCGCATGGCGCGCGACATCCATCGTTCGCTTCTTTTGTCTCACTAGCTTCACACCCGAGTCCACGTTTAGCATGTGCACGGTGACCGAGGGGTCGATGTCGGGCATGTATTCGTGGGACTTGGTGAATATGTTAGTGTTTTTCTTGAGGAACTCGGCTAGACACTCCTTGTTGCTCGGCAACACAGCTCTCACATTGGTGGCTTTTTCAGGGCCTAGGATGGGCACAACCTCCCACTCCTCGACTGACGAAATGCTCTTTTCCAGTTCGGCGATTGAGTCGAAGGTATTTGCCTCCTGGGCATCCTTAGGAACCTCTCCGATCCCGAGGGAGCCAGGTTCGGGTTCGCTTGCGAGAGCGTAGACCATGCTAACAATTTTTTGTTTTTTCATAGTGGTGGCGTAACACTCCCGCGAGGCCCGCTGCTGTTCGTCCAATGTTCCCATCCTGTTAGGGGTGGAAAACTTTATTTTCTGGTGATAAGTGGACGTAACGGCCCTGAAGTGATGTATCGCTGGTCTCCCAAGGATGGCATTATAGGCCAAGGGACCATCTATCACCACGAATTCCTCTATTCGAGTGACAACTTCCTTTCCTTCCCCTAAGGTTAGGGGTAGTTCGATGCTGCCCTCAGGATGAACTCAATCGTTGGAGAAGCCGACCAGTGGAGATGCACGCCTCTTGAGCTTAGTGACATCCCACCCGAGTGCGCGTAAACGACCAAGGGTAGGACGCTTGCTGAGCTTCCTCCATCTACCAGCACCCAATGTATGGGTACGTGGTCGAGCCCGACAACGACAACAAGGGCGTCGTTGTGCTGCTAGAGCTGGGCATTCAACTCCTCGTCCACAAAGGTCACTGGTGGTCCTGGGTCGGCAGGTTTTACAGTTAGGACTTCCGACGTTTCGGGTTTCCCTCGGGCCTGTCGGGCTAGAGTCTTCAGCTTATTGCTGGATTCTCCCCTTGTCGGTCTTCCACTGATGGTGAGGATAGCAGGCGGGCAGTCGTCTTTCTTGGAGACTTTAGCTTCGGTTGCATTTTACCTCCGTTATACTTTCGTCTCCAGCGGCCCGGTTCCGAACCTTATTCGACGAACTCCTTCAGGTATCCTCTTTGGACCAGGGATTCGACCTGATCCTTGAGGTCTCTGCAATCGGCGGTGTCATGCCCATGGTCTCGATGGAATTTGCAATACTTGCTCCTGTCTTTCTTGGCGGGGTCGCTCATGGAGTGTTCCAGCTATTGCAATAGGTTGTTGATAGGGGTCCCATCGATTCGGGTAAGTATCTGATGTACTGGGATGCGAGTGGGGGTGTACTTTCCGTATCGCTTGGTCGGTCAGTCTTAGGGTCCGATCGAGTCTCGTTGGACTCTCTTCTCATAGTCGACTTTTCGATCGATTTCCCTTTAGTGTGACGAGACGCATCGTTCGACTTCTTATCCAAGAACTGGGCCGCAAGCATCTCCTCTCCAGCTATTGTTGTCCACGAATTATGTTACTAATTCTTATATTTGTGCAAGTATACACAATCGTCGCAGAAAGTAATAAAAAGTTCGAATCCACATAGTAAGTGCCCAAACACTCACTATTTACCCAAGAAATCAGTGTATTAAACTAACTAATTTTTCTTCTGAATATATGCTAAAATAAACAACAATGCAGGAGGTTTAAATGTATTTATAAACACACTTAAGAATCGCTAAAACTATCAAACATGAACAGCAAACGAATGATTTCTTATAAGAATAAGGGCATAAGAGGGAGAGAACCGTGACTTTTTCTTGCTACACTAACAATGTTGCAGCATTAATGAAGTGAAGCAGTGGTCAAACAGACAATGTGCTTTTCCAAACACCCTAGATTTTCTGCCATTAGGGTTCTTAGACAAACGATAACAGCATATATAAACAGATTTTAACCAAGCTAGGTGGTGCTTATCCCCAAGTTACCACACTCTAAACTCAATTAGACTCTAGCTCGAGATGAAGTTTTTTGCTCCCTAATACATTTTTCCAAAGGTTATTAAGAAGATATTTCAATATGATGATCAAACACATTGAAAATAGAGTGATACAACAACTTCAAATCAAAACACACTATCATTAATGCAAAACAACAAAGTTACAGCCCTTGAAATGAGTTCACAACATCTCATCCTTACACAAGGTGTTTAGCTAGACAATGCCATAAGAGGAATAAAAACAATACAAAGAGCTTAAAAGATGAAGAGAGGGAGCTGAAGATCAGCTCCTAACAAAAGTTCACGGCTTCTTTCTCGGCTGCAGTTGTCTGGTCTTCTTCTCCTCTTATCTTCCTCGAACGTTGGAGAGGTTTTCTTGAAGTAAGGGTTGAGTGATTTCAATAATGAAATGAAAAATGCCTTTTGTGTGTGGAGGCTTCTCTTCCTGTTGGCATTTATATCTGCCTTCGATTTTAGGGCAACAAAACAAGCCTTGTGGGGCCCAGCTCTCACTCATAATTGAAACCTCTAGTTACTGTAGTAAATTTTGTTGAGAAGTCTTTTCACTGCCAACTTGCTGCTTTTTGTCTCTTTTTTGACCTAATACTGTACATCATCAAAGCTACAGCAAAATGCTCAAAATTAGATCATTTATATAAATGTTAGCATTATATAGAAGAACCTTGATTTCTTTGCTAATTTAGGCATAACTCAATGAATAAGGGGACTAGATGAGGCTATCTTTAGCTATTTTATGCAAATTTTAGACACAAATAACTCTCTTTAGGAGAGTTATCAGCCATGTGACTGTTAATCCTAGCTGTGAGTTCGGTTATGGACCTAACAGGGTATTTGCCGAGTGACCGTACAAGCTTTCTTTCTTTGATGCCCTAGGAGACTACCCACAAGGCTACACTTTCATTACAGTTTGGTACTCGGAGCCTCTCATTCGAGAAGCGTGCGACATACACCTTCAGGTCCTCACCTGGTTTCTGTTTTATCGAGGAGATATAGGCCTCCGTTCGCCGGTTGGTACAGGAGTAGTGGAACTGGTCCACAAATTTGCTGGCCAGGCCCTAATAGCTTCCGACTGAATGTGGGGGCAAGTCCTGAAACCACTGTCGAGTAAGACCGATGAGAATTCTTGAGAAACCTCTACACTGTTCGACATCATTATACCCCGCTTGCCGCATCGCATTTGGTACGACGTGTCGTGGTCCACAAGGTCTGACGATCCATCATATTTGTTTAGTCGTGGTTCTTTAAACCGTTTAGGTAGATCCACGACCAAGATGTTGGTCGTGAAGGGTTCTTGGGCCGTCTTGGAGGGTTCGTACTAGATGGTGGGGCCGACGCCCCCAGCCCCTAATTCGAACTTTGCCTGGTTGAAGATCTCTTCCTTGACTCGATCCAGTTATTTCTGGGCGATCCCAACTTGGAAGGTACTCGACGTCTTGGTGCTGGTCTCCGAGTCCAGTCAAGGTACGGTTGGCCCGCGCTTGGAACGACCTCGGTTGAGTTTTTCCCGAAGATCTCCCGATCCTGCCAGAAGCCCTAGAGATGCCTGAGGGTCTTTGTTTCTAGGTCCTTCTTTAGTAATTCCCCTTCGACCGCACTTTCGTTTGGCAGGGGGAAAGTTTCACAGGTCTGGTCGCTCAAGATCTCGATCAACCTCCCCCTCCCTACCTGGTAAGTCATCTGGGTGTGTGCCGCTCTCATCTCGTTGCGAAACTCGGAACCCTTCTGGTGGGGATGTCCCGCCTTCCTCTTGCCGAAGTGTCCCATCGGGCAGAGTGTGTTGA

mRNA sequence

ATGGAGATGCTAGGTTTTTCTAACAACAATCCCATTCGGGTGGACACTTCTTCGGAGGATGGTCCTGCTTTTCCGGAGGGGCATCCCTTCAACGACAATGAGGACTACCTTCTTTCCACTGAGGAGGATGCCTCTTTGGAGGAGGAGGATTTCCTTCTTCCAATGGAGTGTGTCCCTCTACAGAGGAGAAAGACGAGGAAGGGGATGGGGCGGAGGACGGGCACGGCGAAGAACGAACTCGTTGCACGGGTCTGTGAACTCGAACGGGACCTCCTCGAGATGCGGGAGGAGTTCGTCGATGCCGAGAACGGTGGTCGCTTTGCTGTTGAGATGGTTGTTGATAGGGGTCCCATCGATTCGGGTAAGTATCTGATGTACTGGGATGCGAGTGGGGGTGTACTTTCCGTATCGCTTGGTCGGTCAGTCTTAGGGTCCGATCGAGTCTCGTTGGACTCTCTTCTCATAGTCGACTTTTCGATCGATTTCCCTTTAGTTTATTTCTGGGCGATCCCAACTTGGAAGGTACTCGACGTCTTGGTGCTGGTCTCCGAGTCCAGTCAAGGGGGAAAGTTTCACAGGTCTGGTCGCTCAAGATCTCGATCAACCTCCCCCTCCCTACCTGGTAAGTCATCTGGGTGTGTGCCGCTCTCATCTCGTTGCGAAACTCGGAACCCTTCTGGTGGGGATGTCCCGCCTTCCTCTTGCCGAAGTGTCCCATCGGGCAGAGTGTGTTGA

Coding sequence (CDS)

ATGGAGATGCTAGGTTTTTCTAACAACAATCCCATTCGGGTGGACACTTCTTCGGAGGATGGTCCTGCTTTTCCGGAGGGGCATCCCTTCAACGACAATGAGGACTACCTTCTTTCCACTGAGGAGGATGCCTCTTTGGAGGAGGAGGATTTCCTTCTTCCAATGGAGTGTGTCCCTCTACAGAGGAGAAAGACGAGGAAGGGGATGGGGCGGAGGACGGGCACGGCGAAGAACGAACTCGTTGCACGGGTCTGTGAACTCGAACGGGACCTCCTCGAGATGCGGGAGGAGTTCGTCGATGCCGAGAACGGTGGTCGCTTTGCTGTTGAGATGGTTGTTGATAGGGGTCCCATCGATTCGGGTAAGTATCTGATGTACTGGGATGCGAGTGGGGGTGTACTTTCCGTATCGCTTGGTCGGTCAGTCTTAGGGTCCGATCGAGTCTCGTTGGACTCTCTTCTCATAGTCGACTTTTCGATCGATTTCCCTTTAGTTTATTTCTGGGCGATCCCAACTTGGAAGGTACTCGACGTCTTGGTGCTGGTCTCCGAGTCCAGTCAAGGGGGAAAGTTTCACAGGTCTGGTCGCTCAAGATCTCGATCAACCTCCCCCTCCCTACCTGGTAAGTCATCTGGGTGTGTGCCGCTCTCATCTCGTTGCGAAACTCGGAACCCTTCTGGTGGGGATGTCCCGCCTTCCTCTTGCCGAAGTGTCCCATCGGGCAGAGTGTGTTGA

Protein sequence

MEMLGFSNNNPIRVDTSSEDGPAFPEGHPFNDNEDYLLSTEEDASLEEEDFLLPMECVPLQRRKTRKGMGRRTGTAKNELVARVCELERDLLEMREEFVDAENGGRFAVEMVVDRGPIDSGKYLMYWDASGGVLSVSLGRSVLGSDRVSLDSLLIVDFSIDFPLVYFWAIPTWKVLDVLVLVSESSQGGKFHRSGRSRSRSTSPSLPGKSSGCVPLSSRCETRNPSGGDVPPSSCRSVPSGRVC
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 188..233
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 188..244

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MS028466MS028466gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MS028466.1-cdsMS028466.1-cds-scaffold41:609563..609793CDS
MS028466.1-cdsMS028466.1-cds-scaffold41:609888..609989CDS
MS028466.1-cdsMS028466.1-cds-scaffold41:611962..612122CDS
MS028466.1-cdsMS028466.1-cds-scaffold41:614086..614153CDS
MS028466.1-cdsMS028466.1-cds-scaffold41:614301..614473CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MS028466.1MS028466.1-proteinpolypeptide