Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. CTCCTCGCAGTTCTCCCTTTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT mRNA sequence CTCCTCGCAGTTCTCCCTTTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT Coding sequence (CDS) CTCCTCGCAGTTCTCCCTTTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT Protein sequence LLAVLPLTPTVDRNRTVSRRSKPNSR
Homology
BLAST of MS022859.1 vs. TAIR 10
Match: AT1G28135.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 42.0 bits (97), Expect = 8.7e-05 Identity = 21/26 (80.77%), Postives = 24/26 (92.31%), Query Frame = 0 Query: 1 LLAVLPLTPTVDRNRTVSRRSKPNSR 27 LLAVLPLTPTVDRNR VSR+SKP ++ Sbjct: 7 LLAVLPLTPTVDRNRNVSRQSKPRAQ 32
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
AT1G28135.1 | 8.7e-05 | 80.77 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..26 |
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Type |
MS022859 | MS022859 | gene |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
MS022859.1-cds | MS022859.1-cds-scaffold29:231333..231410 | CDS |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
MS022859.1 | MS022859.1-protein | polypeptide |
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