MS022859 (gene) Bitter gourd (TR) v1

Overview


Name	MS022859
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold29: 231333 .. 231410 (+)
RNA-Seq Expression	MS022859
Synteny	MS022859

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCTCGCAGTTCTCCCTTTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT

mRNA sequence

CTCCTCGCAGTTCTCCCTTTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT

Coding sequence (CDS)

CTCCTCGCAGTTCTCCCTTTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT

Protein sequence

LLAVLPLTPTVDRNRTVSRRSKPNSR

Homology

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BLAST of MS022859 vs. TAIR 10
Match: AT1G28135.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 8.7e-05
Identity = 21/26 (80.77%), Postives = 24/26 (92.31%), Query Frame = 0


Query: 1  LLAVLPLTPTVDRNRTVSRRSKPNSR 27
          LLAVLPLTPTVDRNR VSR+SKP ++
Sbjct: 7  LLAVLPLTPTVDRNRNVSRQSKPRAQ 32

The following BLAST results are available for this feature:

BLAST of MS022859 vs.


Match Name	E-value	Identity	Description

BLAST of MS022859 vs.


Match Name	E-value	Identity	Description

BLAST of MS022859 vs.


Match Name	E-value	Identity	Description

BLAST of MS022859 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G28135.1	8.7e-05	80.77	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022859.1	MS022859.1	mRNA