MS021190.1 (mRNA) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.GTTGAGTTGGACAAGCAGAGCTTTTGTGATCTTAAAGTTGCAAACAACACAGAACATCATGTTGCCTTTAAGGTAATAGTTTTCTTTTCTTTTTCTTTTTTTTTTTAATTAATGAAAATGCACATACATTTGACATTGAATATTTATTTTGGAAAGCTTTTTGCATGTTTTATATTGGACTAAATTCAAATGTACTTCTCTATCGCTCATGCTAGGTCAAAACGACCTCACCCAAGAAGTACTTTGTGCGTCCCAACACTGGTGTTGTACAGCCTTGGGATTCTTGCATCATAAGAGGTCTTAATTGTTACATTAGCATTTTGGTTCTATAAATTTCAAATGATTTTTTTCGCACAATGTCGAAAAATTTGAGGATGCAATTGCAATGAAATGGCAAACCGTTATTTCTTCTCCTTGATTTTAATTTATGGTTCAAGCTTGCAATCAAATTAATGTTGGTTCATTTTGAAATTGGAAAATTGTAGTACATTTTACTGCCTCATGTAAAAGTAAAACTAGTAGGTGCCCTTGACAAATAATTTTTTCCTTTGCACGAGCGACGTTAACTGCTACTAACAGCAAACCTAAGTACCTAACTATTATTTGCACTCCAGTTTTCTCTCTGGATTCCTCAAGGTTTGTCTTTACCTGTTTAACTAATGCCATTGTTGCTGCTGGATCCACAGTGACCCTCCAAGCGCAGCGTGAGTATCCTCCAGATATGCATTGCAAAGATAAGTTTCTCTTACAAAGTACAATAGTCCCTCCAAATACTGATGTAGATGAGCTTCCGGCTGATGCTGTAAGTTTTGACTTGTGCGGCCTCCATTTGAATGAATATACCATTTCATTCTAATAAGCATCATGGAAACTTTATTTCCTCGTTTTTCAGTTCAACAAGGAAAGTGGAAGGGCAATTGAGGAATGCAAGCTTAAGGTTATCTATTTTTCTCCTACATCAGCTTTAGGGAACTCAGAAGATGAAAGGAACTCATCCCAAAGCTCCTCTGTGAGTGCTGAAATTCTCTTTTTTGTCCCCTGCATTAATATATCTCTTTTAGACCTTTTACTTTGTCCCCTAAATTACTATGTTATAATGTAACTGTGTACTTGCAATAGATATAGGTTGAGATAAGAAATTTGAAACATCCTTTTTATTTATGCTGCCTCCTCTTTATTAAATATTGGTTCTAGATATGGTGTCCAATAGTCGTCTACACATCCTTAAGCTGCTGTTTGCCTAGAAATCAGATTATTTATGTATCCCTCCCCTCTCGACTCAATCTGAGTACAAGATGACCATTCACTCAAAAAGTGCCCTCCAGAGTCTCTCTCTGTAACTAATACTCAAGGGCCTCACTCGAGTATCCACAAGCACACTCAACTAACACCCAACTATTACACATTATCACGTATCTTCCCTTTCATTCTTTTACTTTTTACAACCTTGCACCTTCGTAATCAGGGTCTATCAGAATTTAAGCTATTTTTAAGGCTTTATCAATCATAAAACTTCTATAGGCTTGCTTTTTACTATTCCAAGTTTTCAACAAGTGAAATATAGATTGTTATTATATTTCCTTATCGGGGTCCATCATCAGGCTTTACAACGTCTGAAGGAAGAAAGAGACATGGCTATTAGGCAAACACATCAATTACAACAGGAACTGGTGAGTTACACCCGTTTCTCTATTATGCTTCTTAGGTTTGAAGTTGTGCTTCTTTGCTGATGTAGGACTTGTAAAGTCCAAATGTTGTTGAACTTGTTCAATGGATATTTATATGTTATTAGTTGTCTGAAATTCCCAGTTGTACATTTCCAGCAGATGAATAGTAGGATTGCGCAAAATTGTTAACGTGCATTTTATTAATTGGAGATTAAAAAACTATAGACGTTTCAATTAATAATTTAACAACCTTATAATGATTAATAGCATAGGGCTCTGAGTGAGAAGATTTATGTAGGGAAATGAGCAAGGTGGGGTCCAGTATCATCAATGGTAGTTGGTTTGATCTATTATTAGGTTGTATCCTATAAATCTGGCATGTCAAATTCATAGAATTGCATATATACTTGAACATGGATGATATGTGCATTTCATATTTCCTTGAGGAGAGCTGTTATCATTCATTTGACATTATATTTTTTGTGTTCAATATTTATTTGGTTCTTAGTTCCTACCCTTACCACATGGATCTGTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTTTTGCATTATGCTTATGACCACCCTACTAATACTTGGGAGGTTCTGGCCACCTCAAGTCTAGGTCCTTGAGATATCATGGATTTAAATTATCGAAGATAATTGTTATCAAAGAGGGAAAAAATATTATCAATGTTTCTTCCAAATCACTGTAGAATGTAGATAACAACTTTAATGCTTTATGTACCAATTACTTCCCAATAGGACATGCTGAAGAGACGAAAATATCGAAAAAGCGATCCTGGCTTCTCATTTACTTTCGCCATCTTCGTGGGCATTGTCGGTATCATGGCGGGTTTCCTCTTGAATCTCTCATTATCCTCACCATCTACAGAA GTTGAGTTGGACAAGCAGAGCTTTTGTGATCTTAAAGTTGCAAACAACACAGAACATCATGTTGCCTTTAAGGTCAAAACGACCTCACCCAAGAAGTACTTTGTGCGTCCCAACACTGGTGTTGTACAGCCTTGGGATTCTTGCATCATAAGAGTGACCCTCCAAGCGCAGCGTGAGTATCCTCCAGATATGCATTGCAAAGATAAGTTTCTCTTACAAAGTACAATAGTCCCTCCAAATACTGATGTAGATGAGCTTCCGGCTGATGCTTTCAACAAGGAAAGTGGAAGGGCAATTGAGGAATGCAAGCTTAAGGTTATCTATTTTTCTCCTACATCAGCTTTAGGGAACTCAGAAGATGAAAGGAACTCATCCCAAAGCTCCTCTGCTTTACAACGTCTGAAGGAAGAAAGAGACATGGCTATTAGGCAAACACATCAATTACAACAGGAACTGGACATGCTGAAGAGACGAAAATATCGAAAAAGCGATCCTGGCTTCTCATTTACTTTCGCCATCTTCGTGGGCATTGTCGGTATCATGGCGGGTTTCCTCTTGAATCTCTCATTATCCTCACCATCTACAGAA GTTGAGTTGGACAAGCAGAGCTTTTGTGATCTTAAAGTTGCAAACAACACAGAACATCATGTTGCCTTTAAGGTCAAAACGACCTCACCCAAGAAGTACTTTGTGCGTCCCAACACTGGTGTTGTACAGCCTTGGGATTCTTGCATCATAAGAGTGACCCTCCAAGCGCAGCGTGAGTATCCTCCAGATATGCATTGCAAAGATAAGTTTCTCTTACAAAGTACAATAGTCCCTCCAAATACTGATGTAGATGAGCTTCCGGCTGATGCTTTCAACAAGGAAAGTGGAAGGGCAATTGAGGAATGCAAGCTTAAGGTTATCTATTTTTCTCCTACATCAGCTTTAGGGAACTCAGAAGATGAAAGGAACTCATCCCAAAGCTCCTCTGCTTTACAACGTCTGAAGGAAGAAAGAGACATGGCTATTAGGCAAACACATCAATTACAACAGGAACTGGACATGCTGAAGAGACGAAAATATCGAAAAAGCGATCCTGGCTTCTCATTTACTTTCGCCATCTTCGTGGGCATTGTCGGTATCATGGCGGGTTTCCTCTTGAATCTCTCATTATCCTCACCATCTACAGAA VELDKQSFCDLKVANNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQREYPPDMHCKDKFLLQSTIVPPNTDVDELPADAFNKESGRAIEECKLKVIYFSPTSALGNSEDERNSSQSSSALQRLKEERDMAIRQTHQLQQELDMLKRRKYRKSDPGFSFTFAIFVGIVGIMAGFLLNLSLSSPSTE Homology
BLAST of MS021190.1 vs. NCBI nr
Match: XP_022155548.1 (vesicle-associated protein 2-1 [Momordica charantia]) HSP 1 Score: 389.4 bits (999), Expect = 1.8e-104 Identity = 194/196 (98.98%), Postives = 196/196 (100.00%), Query Frame = 0
BLAST of MS021190.1 vs. NCBI nr
Match: XP_038905973.1 (vesicle-associated protein 2-1 [Benincasa hispida]) HSP 1 Score: 367.9 bits (943), Expect = 5.6e-98 Identity = 181/196 (92.35%), Postives = 189/196 (96.43%), Query Frame = 0
BLAST of MS021190.1 vs. NCBI nr
Match: XP_008448784.1 (PREDICTED: vesicle-associated protein 2-1 [Cucumis melo] >KAA0041052.1 vesicle-associated protein 2-1 [Cucumis melo var. makuwa] >TYK12062.1 vesicle-associated protein 2-1 [Cucumis melo var. makuwa]) HSP 1 Score: 366.7 bits (940), Expect = 1.3e-97 Identity = 181/196 (92.35%), Postives = 188/196 (95.92%), Query Frame = 0
BLAST of MS021190.1 vs. NCBI nr
Match: XP_023551809.1 (vesicle-associated protein 2-1-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 364.4 bits (934), Expect = 6.2e-97 Identity = 179/196 (91.33%), Postives = 191/196 (97.45%), Query Frame = 0
BLAST of MS021190.1 vs. NCBI nr
Match: XP_022923370.1 (vesicle-associated protein 2-1 [Cucurbita moschata] >XP_022965179.1 vesicle-associated protein 2-1-like [Cucurbita maxima] >KAG6577660.1 Vesicle-associated protein 2-1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 364.4 bits (934), Expect = 6.2e-97 Identity = 179/196 (91.33%), Postives = 190/196 (96.94%), Query Frame = 0
BLAST of MS021190.1 vs. ExPASy Swiss-Prot
Match: Q9LVU1 (Vesicle-associated protein 2-1 OS=Arabidopsis thaliana OX=3702 GN=PVA21 PE=1 SV=1) HSP 1 Score: 261.2 bits (666), Expect = 9.7e-69 Identity = 129/199 (64.82%), Postives = 160/199 (80.40%), Query Frame = 0
BLAST of MS021190.1 vs. ExPASy Swiss-Prot
Match: Q9SHC8 (Vesicle-associated protein 1-2 OS=Arabidopsis thaliana OX=3702 GN=PVA12 PE=1 SV=1) HSP 1 Score: 156.0 bits (393), Expect = 4.4e-37 Identity = 84/219 (38.36%), Postives = 126/219 (57.53%), Query Frame = 0
BLAST of MS021190.1 vs. ExPASy Swiss-Prot
Match: Q84WW5 (Vesicle-associated protein 1-3 OS=Arabidopsis thaliana OX=3702 GN=PVA13 PE=2 SV=1) HSP 1 Score: 156.0 bits (393), Expect = 4.4e-37 Identity = 90/219 (41.10%), Postives = 128/219 (58.45%), Query Frame = 0
BLAST of MS021190.1 vs. ExPASy Swiss-Prot
Match: Q8VZ95 (Vesicle-associated protein 1-1 OS=Arabidopsis thaliana OX=3702 GN=PVA11 PE=1 SV=1) HSP 1 Score: 153.7 bits (387), Expect = 2.2e-36 Identity = 84/219 (38.36%), Postives = 124/219 (56.62%), Query Frame = 0
BLAST of MS021190.1 vs. ExPASy Swiss-Prot
Match: B9DHD7 (Vesicle-associated protein 2-2 OS=Arabidopsis thaliana OX=3702 GN=PVA22 PE=1 SV=1) HSP 1 Score: 124.0 bits (310), Expect = 1.9e-27 Identity = 60/114 (52.63%), Postives = 78/114 (68.42%), Query Frame = 0
BLAST of MS021190.1 vs. ExPASy TrEMBL
Match: A0A6J1DN90 (vesicle-associated protein 2-1 OS=Momordica charantia OX=3673 GN=LOC111022662 PE=4 SV=1) HSP 1 Score: 389.4 bits (999), Expect = 8.7e-105 Identity = 194/196 (98.98%), Postives = 196/196 (100.00%), Query Frame = 0
BLAST of MS021190.1 vs. ExPASy TrEMBL
Match: A0A5A7TC60 (Vesicle-associated protein 2-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00770 PE=4 SV=1) HSP 1 Score: 366.7 bits (940), Expect = 6.1e-98 Identity = 181/196 (92.35%), Postives = 188/196 (95.92%), Query Frame = 0
BLAST of MS021190.1 vs. ExPASy TrEMBL
Match: A0A1S3BLE3 (vesicle-associated protein 2-1 OS=Cucumis melo OX=3656 GN=LOC103490849 PE=4 SV=1) HSP 1 Score: 366.7 bits (940), Expect = 6.1e-98 Identity = 181/196 (92.35%), Postives = 188/196 (95.92%), Query Frame = 0
BLAST of MS021190.1 vs. ExPASy TrEMBL
Match: A0A6J1HQA2 (vesicle-associated protein 2-1-like OS=Cucurbita maxima OX=3661 GN=LOC111465113 PE=4 SV=1) HSP 1 Score: 364.4 bits (934), Expect = 3.0e-97 Identity = 179/196 (91.33%), Postives = 190/196 (96.94%), Query Frame = 0
BLAST of MS021190.1 vs. ExPASy TrEMBL
Match: A0A6J1EBL8 (vesicle-associated protein 2-1 OS=Cucurbita moschata OX=3662 GN=LOC111431088 PE=4 SV=1) HSP 1 Score: 364.4 bits (934), Expect = 3.0e-97 Identity = 179/196 (91.33%), Postives = 190/196 (96.94%), Query Frame = 0
BLAST of MS021190.1 vs. TAIR 10
Match: AT5G47180.1 (Plant VAMP (vesicle-associated membrane protein) family protein ) HSP 1 Score: 261.2 bits (666), Expect = 6.9e-70 Identity = 129/199 (64.82%), Postives = 160/199 (80.40%), Query Frame = 0
BLAST of MS021190.1 vs. TAIR 10
Match: AT5G47180.2 (Plant VAMP (vesicle-associated membrane protein) family protein ) HSP 1 Score: 261.2 bits (666), Expect = 6.9e-70 Identity = 129/199 (64.82%), Postives = 160/199 (80.40%), Query Frame = 0
BLAST of MS021190.1 vs. TAIR 10
Match: AT2G45140.1 (plant VAP homolog 12 ) HSP 1 Score: 156.0 bits (393), Expect = 3.1e-38 Identity = 84/219 (38.36%), Postives = 126/219 (57.53%), Query Frame = 0
BLAST of MS021190.1 vs. TAIR 10
Match: AT4G00170.1 (Plant VAMP (vesicle-associated membrane protein) family protein ) HSP 1 Score: 156.0 bits (393), Expect = 3.1e-38 Identity = 90/219 (41.10%), Postives = 128/219 (58.45%), Query Frame = 0
BLAST of MS021190.1 vs. TAIR 10
Match: AT3G60600.1 (vesicle associated protein ) HSP 1 Score: 153.7 bits (387), Expect = 1.6e-37 Identity = 84/219 (38.36%), Postives = 124/219 (56.62%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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