MS016846.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS016846.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Sec14p-like phosphatidylinositol transfer family protein
Location	scaffold9_1: 424873 .. 424989 (-)
Sequence length	117
RNA-Seq Expression	MS016846.1
Synteny	MS016846.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTCCACGAGACTGTTAGAGTTTGAAAGGAGTGTTTCAGTTAAGTTTCCAGCTTGCTCTGTTGCTGCAAAGAAGCATATTGATTCATCTACAAGGATTTTGGATGTTGAAGGCGTG

mRNA sequence

GTTTCCACGAGACTGTTAGAGTTTGAAAGGAGTGTTTCAGTTAAGTTTCCAGCTTGCTCTGTTGCTGCAAAGAAGCATATTGATTCATCTACAAGGATTTTGGATGTTGAAGGCGTG

Coding sequence (CDS)

GTTTCCACGAGACTGTTAGAGTTTGAAAGGAGTGTTTCAGTTAAGTTTCCAGCTTGCTCTGTTGCTGCAAAGAAGCATATTGATTCATCTACAAGGATTTTGGATGTTGAAGGCGTG

Protein sequence

VSTRLLEFERSVSVKFPACSVAAKKHIDSSTRILDVEGV

Homology

[Close]

BLAST of MS016846.1 vs. NCBI nr
Match: XP_020251533.1 (phosphatidylinositol/phosphatidylcholine transfer protein SFH6-like isoform X1 [Asparagus officinalis] >XP_020251534.1 phosphatidylinositol/phosphatidylcholine transfer protein SFH6-like isoform X1 [Asparagus officinalis])

HSP 1 Score: 61.2 bits (147), Expect = 2.2e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 7   EFERSVSVKFPACSVAAKKHIDSSTRILDVEGV 40
           EFERS S+KFPACS+AAKKHIDSST ILDV+GV
Sbjct: 202 EFERSFSIKFPACSIAAKKHIDSSTTILDVQGV 234

[Close]

BLAST of MS016846.1 vs. NCBI nr
Match: CAD1822724.1 (unnamed protein product [Ananas comosus var. bracteatus])

HSP 1 Score: 61.2 bits (147), Expect = 2.2e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 7   EFERSVSVKFPACSVAAKKHIDSSTRILDVEGV 40
           EFERS S+KFPACS+AAKKHIDSST ILDV+GV
Sbjct: 285 EFERSFSIKFPACSIAAKKHIDSSTTILDVQGV 317

[Close]

BLAST of MS016846.1 vs. NCBI nr
Match: CAD1822716.1 (unnamed protein product [Ananas comosus var. bracteatus])

HSP 1 Score: 61.2 bits (147), Expect = 2.2e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 7   EFERSVSVKFPACSVAAKKHIDSSTRILDVEGV 40
           EFERS S+KFPACS+AAKKHIDSST ILDV+GV
Sbjct: 234 EFERSFSIKFPACSIAAKKHIDSSTTILDVQGV 266

[Close]

BLAST of MS016846.1 vs. NCBI nr
Match: XP_020251535.1 (phosphatidylinositol/phosphatidylcholine transfer protein SFH6-like isoform X2 [Asparagus officinalis])

HSP 1 Score: 61.2 bits (147), Expect = 2.2e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 7   EFERSVSVKFPACSVAAKKHIDSSTRILDVEGV 40
           EFERS S+KFPACS+AAKKHIDSST ILDV+GV
Sbjct: 202 EFERSFSIKFPACSIAAKKHIDSSTTILDVQGV 234

[Close]

BLAST of MS016846.1 vs. NCBI nr
Match: ONK81270.1 (uncharacterized protein A4U43_C01F27220 [Asparagus officinalis])

HSP 1 Score: 61.2 bits (147), Expect = 2.2e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 7   EFERSVSVKFPACSVAAKKHIDSSTRILDVEGV 40
           EFERS S+KFPACS+AAKKHIDSST ILDV+GV
Sbjct: 202 EFERSFSIKFPACSIAAKKHIDSSTTILDVQGV 234

[Close]

BLAST of MS016846.1 vs. ExPASy Swiss-Prot
Match: Q9SI13 (Phosphatidylinositol/phosphatidylcholine transfer protein SFH10 OS=Arabidopsis thaliana OX=3702 GN=SFH10 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 6.5e-09
Identity = 27/39 (69.23%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 1   VSTRLLEFERSVSVKFPACSVAAKKHIDSSTRILDVEGV 40
           V+  ++EFER+ +VKFPACS+AAKKHID ST ILDV+GV
Sbjct: 168 VNYHVMEFERTFNVKFPACSIAAKKHIDQSTTILDVQGV 206

[Close]

BLAST of MS016846.1 vs. ExPASy Swiss-Prot
Match: Q94A34 (Phosphatidylinositol/phosphatidylcholine transfer protein SFH12 OS=Arabidopsis thaliana OX=3702 GN=SFH12 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 6.5e-09
Identity = 27/39 (69.23%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 1   VSTRLLEFERSVSVKFPACSVAAKKHIDSSTRILDVEGV 40
           V+  ++EFER+ +VKFPACS+AAKKHID ST ILDV+GV
Sbjct: 165 VNYHVMEFERTFNVKFPACSIAAKKHIDQSTTILDVQGV 203

[Close]

BLAST of MS016846.1 vs. ExPASy Swiss-Prot
Match: F4JVA9 (Phosphatidylinositol/phosphatidylcholine transfer protein SFH2 OS=Arabidopsis thaliana OX=3702 GN=SFH2 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.2e-07
Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1   VSTRLLEFERSVSVKFPACSVAAKKHIDSSTRILDVEGV 40
           V   + EFE++ +VKFPACS+AAK+HID ST ILDV+GV
Sbjct: 183 VKYHVKEFEKTFNVKFPACSIAAKRHIDQSTTILDVQGV 221

[Close]

BLAST of MS016846.1 vs. ExPASy Swiss-Prot
Match: F4HP88 (Phosphatidylinositol/phosphatidylcholine transfer protein SFH4 OS=Arabidopsis thaliana OX=3702 GN=SFH4 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.6e-07
Identity = 23/33 (69.70%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 7   EFERSVSVKFPACSVAAKKHIDSSTRILDVEGV 40
           EFE++++VKFPAC +AAK+HIDSST ILDV+G+
Sbjct: 197 EFEKTITVKFPACCIAAKRHIDSSTTILDVQGL 229

[Close]

BLAST of MS016846.1 vs. ExPASy Swiss-Prot
Match: F4JVA6 (Phosphatidylinositol/phosphatidylcholine transfer protein SFH6 OS=Arabidopsis thaliana OX=3702 GN=SFH6 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.1e-07
Identity = 25/33 (75.76%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 7   EFERSVSVKFPACSVAAKKHIDSSTRILDVEGV 40
           EFERS  +KFPAC++AAKK+IDSST ILDV+GV
Sbjct: 201 EFERSFMLKFPACTIAAKKYIDSSTTILDVQGV 233

[Close]

BLAST of MS016846.1 vs. ExPASy TrEMBL
Match: A0A6P5FUV3 (phosphatidylinositol/phosphatidylcholine transfer protein SFH8-like OS=Ananas comosus OX=4615 GN=LOC109718313 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 7   EFERSVSVKFPACSVAAKKHIDSSTRILDVEGV 40
           EFERS S+KFPACS+AAKKHIDSST ILDV+GV
Sbjct: 200 EFERSFSIKFPACSIAAKKHIDSSTTILDVQGV 232

[Close]

BLAST of MS016846.1 vs. ExPASy TrEMBL
Match: A0A5P1FWG0 (CRAL-TRIO domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C01F27220 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 7   EFERSVSVKFPACSVAAKKHIDSSTRILDVEGV 40
           EFERS S+KFPACS+AAKKHIDSST ILDV+GV
Sbjct: 202 EFERSFSIKFPACSIAAKKHIDSSTTILDVQGV 234

[Close]

BLAST of MS016846.1 vs. ExPASy TrEMBL
Match: A0A6V7NWG9 (CRAL-TRIO domain-containing protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS5927 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 7   EFERSVSVKFPACSVAAKKHIDSSTRILDVEGV 40
           EFERS S+KFPACS+AAKKHIDSST ILDV+GV
Sbjct: 234 EFERSFSIKFPACSIAAKKHIDSSTTILDVQGV 266

[Close]

BLAST of MS016846.1 vs. ExPASy TrEMBL
Match: A0A6V7NWI7 (CRAL-TRIO domain-containing protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS5935 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 7   EFERSVSVKFPACSVAAKKHIDSSTRILDVEGV 40
           EFERS S+KFPACS+AAKKHIDSST ILDV+GV
Sbjct: 285 EFERSFSIKFPACSIAAKKHIDSSTTILDVQGV 317

[Close]

BLAST of MS016846.1 vs. ExPASy TrEMBL
Match: A0A5S9XZ67 (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AN1_LOCUS20494 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.4e-06
Identity = 27/39 (69.23%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 1   VSTRLLEFERSVSVKFPACSVAAKKHIDSSTRILDVEGV 40
           V+  ++EFER+ +VKFPACS+AAKKHID ST ILDV+GV
Sbjct: 165 VNYHVMEFERTFNVKFPACSIAAKKHIDQSTTILDVQGV 203

[Close]

BLAST of MS016846.1 vs. TAIR 10
Match: AT2G18180.1 (Sec14p-like phosphatidylinositol transfer family protein )

HSP 1 Score: 60.1 bits (144), Expect = 4.6e-10
Identity = 27/39 (69.23%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 1   VSTRLLEFERSVSVKFPACSVAAKKHIDSSTRILDVEGV 40
           V+  ++EFER+ +VKFPACS+AAKKHID ST ILDV+GV
Sbjct: 168 VNYHVMEFERTFNVKFPACSIAAKKHIDQSTTILDVQGV 206

[Close]

BLAST of MS016846.1 vs. TAIR 10
Match: AT4G36490.1 (SEC14-like 12 )

HSP 1 Score: 60.1 bits (144), Expect = 4.6e-10
Identity = 27/39 (69.23%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 1   VSTRLLEFERSVSVKFPACSVAAKKHIDSSTRILDVEGV 40
           V+  ++EFER+ +VKFPACS+AAKKHID ST ILDV+GV
Sbjct: 165 VNYHVMEFERTFNVKFPACSIAAKKHIDQSTTILDVQGV 203

[Close]

BLAST of MS016846.1 vs. TAIR 10
Match: AT4G39180.1 (Sec14p-like phosphatidylinositol transfer family protein )

HSP 1 Score: 55.8 bits (133), Expect = 8.8e-09
Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1   VSTRLLEFERSVSVKFPACSVAAKKHIDSSTRILDVEGV 40
           V   + EFE++ +VKFPACS+AAK+HID ST ILDV+GV
Sbjct: 183 VKYHVKEFEKTFNVKFPACSIAAKRHIDQSTTILDVQGV 221

[Close]

BLAST of MS016846.1 vs. TAIR 10
Match: AT4G39180.2 (Sec14p-like phosphatidylinositol transfer family protein )

HSP 1 Score: 55.8 bits (133), Expect = 8.8e-09
Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1   VSTRLLEFERSVSVKFPACSVAAKKHIDSSTRILDVEGV 40
           V   + EFE++ +VKFPACS+AAK+HID ST ILDV+GV
Sbjct: 183 VKYHVKEFEKTFNVKFPACSIAAKRHIDQSTTILDVQGV 221

[Close]

BLAST of MS016846.1 vs. TAIR 10
Match: AT1G19650.1 (Sec14p-like phosphatidylinositol transfer family protein )

HSP 1 Score: 55.5 bits (132), Expect = 1.1e-08
Identity = 23/33 (69.70%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 7   EFERSVSVKFPACSVAAKKHIDSSTRILDVEGV 40
           EFE++++VKFPAC +AAK+HIDSST ILDV+G+
Sbjct: 197 EFEKTITVKFPACCIAAKRHIDSSTTILDVQGL 229

The following BLAST results are available for this feature:

BLAST of MS016846.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_020251533.1	2.2e-06	84.85	phosphatidylinositol/phosphatidylcholine transfer protein SFH6-like isoform X1 [...	[more]
CAD1822724.1	2.2e-06	84.85	unnamed protein product [Ananas comosus var. bracteatus]	[more]
CAD1822716.1	2.2e-06	84.85	unnamed protein product [Ananas comosus var. bracteatus]	[more]
XP_020251535.1	2.2e-06	84.85	phosphatidylinositol/phosphatidylcholine transfer protein SFH6-like isoform X2 [...	[more]
ONK81270.1	2.2e-06	84.85	uncharacterized protein A4U43_C01F27220 [Asparagus officinalis]	[more]

BLAST of MS016846.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SI13	6.5e-09	69.23	Phosphatidylinositol/phosphatidylcholine transfer protein SFH10 OS=Arabidopsis t...	[more]
Q94A34	6.5e-09	69.23	Phosphatidylinositol/phosphatidylcholine transfer protein SFH12 OS=Arabidopsis t...	[more]
F4JVA9	1.2e-07	64.10	Phosphatidylinositol/phosphatidylcholine transfer protein SFH2 OS=Arabidopsis th...	[more]
F4HP88	1.6e-07	69.70	Phosphatidylinositol/phosphatidylcholine transfer protein SFH4 OS=Arabidopsis th...	[more]
F4JVA6	2.1e-07	75.76	Phosphatidylinositol/phosphatidylcholine transfer protein SFH6 OS=Arabidopsis th...	[more]

BLAST of MS016846.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P5FUV3	1.1e-06	84.85	phosphatidylinositol/phosphatidylcholine transfer protein SFH8-like OS=Ananas co...	[more]
A0A5P1FWG0	1.1e-06	84.85	CRAL-TRIO domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C0...	[more]
A0A6V7NWG9	1.1e-06	84.85	CRAL-TRIO domain-containing protein OS=Ananas comosus var. bracteatus OX=296719 ...	[more]
A0A6V7NWI7	1.1e-06	84.85	CRAL-TRIO domain-containing protein OS=Ananas comosus var. bracteatus OX=296719 ...	[more]
A0A5S9XZ67	2.4e-06	69.23	Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AN1_LOCUS20494 PE=4 S...	[more]

BLAST of MS016846.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18180.1	4.6e-10	69.23	Sec14p-like phosphatidylinositol transfer family protein	[more]
AT4G36490.1	4.6e-10	69.23	SEC14-like 12	[more]
AT4G39180.1	8.8e-09	64.10	Sec14p-like phosphatidylinositol transfer family protein	[more]
AT4G39180.2	8.8e-09	64.10	Sec14p-like phosphatidylinositol transfer family protein	[more]
AT1G19650.1	1.1e-08	69.70	Sec14p-like phosphatidylinositol transfer family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR45657:SF41	SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN	coord: 6..39
None	No IPR available	PANTHER	PTHR45657	CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED	coord: 6..39

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS016846	MS016846	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS016846.1-cds	MS016846.1-cds-scaffold9_1:424873..424989	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS016846.1	MS016846.1-protein	polypeptide