MS016145.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS016145.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DNA-directed RNA polymerase subunit beta
Location	scaffold9_2: 679280 .. 679416 (-)
Sequence length	135
RNA-Seq Expression	MS016145.1
Synteny	MS016145.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAGTACCTTTTGATGAGAGATATGAACCAGAGGCTTTTAAAAACTAGTATTTTCTGAATTATATGAAGTCAGTAAGCAAATAGCGAGTCCATGGACCTTTGAACCCAAGTATCTCGGAAAAAGCAGAATATTTGAT

mRNA sequence

ATAGTACCTTTTGATGAGAGATATGAACCAGAGGCTTTTAAACTAGTATTTTCTGAATTATATGAAGTCAGTAAGCAAATAGCGAGTCCATGGACCTTTGAACCCAAGTATCTCGGAAAAAGCAGAATATTTGAT

Coding sequence (CDS)

ATAGTACCTTTTGATGAGAGATATGAACCAGAGGCTTTTAAACTAGTATTTTCTGAATTATATGAAGTCAGTAAGCAAATAGCGAGTCCATGGACCTTTGAACCCAAGTATCTCGGAAAAAGCAGAATATTTGAT

Protein sequence

IVPFDERYEPEAFKLVFSELYEVSKQIASPWTFEPKYLGKSRIFD

Homology

[Close]

BLAST of MS016145.1 vs. NCBI nr
Match: ALI91060.1 (RpoB, partial [Apodytes dimidiata])

HSP 1 Score: 76.6 bits (187), Expect = 5.9e-11
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 1   IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD 46
           I PFDERYEPEA  KLVFSELYE SKQ A+PW FEP+Y GKSRIFD
Sbjct: 884 IAPFDERYEPEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFD 929

[Close]

BLAST of MS016145.1 vs. NCBI nr
Match: AHM89856.1 (RNA polymerase beta subunit [Lagenaria siceraria])

HSP 1 Score: 76.3 bits (186), Expect = 7.8e-11
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 1   IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD 46
           IVPFDERYE EA  KLVFSELYE SKQ ASPW FEP+Y GKSRIFD
Sbjct: 884 IVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFD 929

[Close]

BLAST of MS016145.1 vs. NCBI nr
Match: YP_009753166.1 (RNA polymerase subunit beta [Trichosanthes truncata] >QIT06238.1 RNA polymerase subunit beta [Trichosanthes truncata])

HSP 1 Score: 76.3 bits (186), Expect = 7.8e-11
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 1   IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD 46
           IVPFDERYE EA  KLVFSELYE SKQ ASPW FEP+Y GKSRIFD
Sbjct: 884 IVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFD 929

[Close]

BLAST of MS016145.1 vs. NCBI nr
Match: YP_009236272.1 (RNA polymerase beta subunit [Gynostemma pentaphyllum] >YP_009440149.1 RNA polymerase beta subunit [Gynostemma longipes] >AMF83983.1 RNA polymerase beta subunit [Gynostemma pentaphyllum] >ANI25177.1 RNA polymerase beta subunit [Gynostemma pentaphyllum] >ATG86892.1 RNA polymerase beta subunit [Gynostemma longipes])

HSP 1 Score: 76.3 bits (186), Expect = 7.8e-11
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 1   IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD 46
           IVPFDERYE EA  KLVFSELYE SKQ ASPW FEP+Y GKSRIFD
Sbjct: 884 IVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFD 929

[Close]

BLAST of MS016145.1 vs. NCBI nr
Match: YP_009752827.1 (RNA polymerase subunit beta [Baijiania yunnanensis] >QIT05899.1 RNA polymerase subunit beta [Baijiania yunnanensis])

HSP 1 Score: 76.3 bits (186), Expect = 7.8e-11
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 1   IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD 46
           IVPFDERYE EA  KLVFSELYE SKQ ASPW FEP+Y GKSRIFD
Sbjct: 884 IVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFD 929

[Close]

BLAST of MS016145.1 vs. ExPASy Swiss-Prot
Match: Q4VZP1 (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 1.0e-13
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 1   IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD 46
           IVPFDERYE EA  KLVFSELYE SKQ ASPW FEP+Y GKSRIFD
Sbjct: 884 IVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFD 929

[Close]

BLAST of MS016145.1 vs. ExPASy Swiss-Prot
Match: A9LYH7 (DNA-directed RNA polymerase subunit beta OS=Acorus americanus OX=263995 GN=rpoB PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.6e-13
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 1   IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD 46
           I PFDERYE EA  KLVFSELYE SKQ A+PW FEP+Y GKSRIFD
Sbjct: 897 IAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFD 942

[Close]

BLAST of MS016145.1 vs. ExPASy Swiss-Prot
Match: Q3V542 (DNA-directed RNA polymerase subunit beta OS=Acorus calamus OX=4465 GN=rpoB PE=3 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 6.6e-13
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 1   IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD 46
           I PFDERYE EA  KLVFSELYE SKQ A+PW FEP+Y GKSRIFD
Sbjct: 885 IAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFD 930

[Close]

BLAST of MS016145.1 vs. ExPASy Swiss-Prot
Match: Q5QA72 (DNA-directed RNA polymerase subunit beta OS=Acorus gramineus OX=55184 GN=rpoB PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.6e-13
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 1   IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD 46
           I PFDERYE EA  KLVFSELYE SKQ A+PW FEP+Y GKSRIFD
Sbjct: 885 IAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFD 930

[Close]

BLAST of MS016145.1 vs. ExPASy Swiss-Prot
Match: A4QJA7 (DNA-directed RNA polymerase subunit beta OS=Aethionema cordifolium OX=434059 GN=rpoB PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.6e-13
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 1   IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD 46
           I PFDERYE EA  KLVFSELYE SKQ A+PW FEP+Y GKSRIFD
Sbjct: 887 IAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFD 932

[Close]

BLAST of MS016145.1 vs. ExPASy TrEMBL
Match: A0A0S0ZKY2 (DNA-directed RNA polymerase subunit beta (Fragment) OS=Apodytes dimidiata OX=159374 GN=rpoB PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.9e-11
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 1   IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD 46
           I PFDERYEPEA  KLVFSELYE SKQ A+PW FEP+Y GKSRIFD
Sbjct: 884 IAPFDERYEPEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFD 929

[Close]

BLAST of MS016145.1 vs. ExPASy TrEMBL
Match: A0A218KG28 (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus var. hardwickii OX=319220 GN=rpoB PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.8e-11
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 1   IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD 46
           IVPFDERYE EA  KLVFSELYE SKQ ASPW FEP+Y GKSRIFD
Sbjct: 884 IVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFD 929

[Close]

BLAST of MS016145.1 vs. ExPASy TrEMBL
Match: A0A6H0ETN6 (DNA-directed RNA polymerase subunit beta OS=Trichosanthes kirilowii OX=3677 GN=rpoB PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.8e-11
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 1   IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD 46
           IVPFDERYE EA  KLVFSELYE SKQ ASPW FEP+Y GKSRIFD
Sbjct: 884 IVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFD 929

[Close]

BLAST of MS016145.1 vs. ExPASy TrEMBL
Match: A0A1X9Q1B9 (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.8e-11
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 1   IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD 46
           IVPFDERYE EA  KLVFSELYE SKQ ASPW FEP+Y GKSRIFD
Sbjct: 884 IVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFD 929

[Close]

BLAST of MS016145.1 vs. ExPASy TrEMBL
Match: A0A249RZI0 (DNA-directed RNA polymerase subunit beta OS=Cucumis melo var. cantalupensis OX=3658 GN=rpoB PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.8e-11
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 1   IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD 46
           IVPFDERYE EA  KLVFSELYE SKQ ASPW FEP+Y GKSRIFD
Sbjct: 884 IVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFD 929

[Close]

BLAST of MS016145.1 vs. TAIR 10
Match: ATCG00190.1 (RNA polymerase subunit beta )

HSP 1 Score: 73.6 bits (179), Expect = 4.7e-14
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 1   IVPFDERYEPEAF-KLVFSELYEVSKQIASPWTFEPKYLGKSRIFD 46
           I PFDERYE EA  KLVFSELYE SKQ A+PW FEP+Y GKSRIFD
Sbjct: 886 IAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFD 931

The following BLAST results are available for this feature:

BLAST of MS016145.1 vs. NCBI nr


Match Name	E-value	Identity	Description
ALI91060.1	5.9e-11	80.43	RpoB, partial [Apodytes dimidiata]	[more]
AHM89856.1	7.8e-11	82.61	RNA polymerase beta subunit [Lagenaria siceraria]	[more]
YP_009753166.1	7.8e-11	82.61	RNA polymerase subunit beta [Trichosanthes truncata] >QIT06238.1 RNA polymerase ...	[more]
YP_009236272.1	7.8e-11	82.61	RNA polymerase beta subunit [Gynostemma pentaphyllum] >YP_009440149.1 RNA polyme...	[more]
YP_009752827.1	7.8e-11	82.61	RNA polymerase subunit beta [Baijiania yunnanensis] >QIT05899.1 RNA polymerase s...	[more]

BLAST of MS016145.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP1	1.0e-13	82.61	DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3...	[more]
A9LYH7	6.6e-13	78.26	DNA-directed RNA polymerase subunit beta OS=Acorus americanus OX=263995 GN=rpoB ...	[more]
Q3V542	6.6e-13	78.26	DNA-directed RNA polymerase subunit beta OS=Acorus calamus OX=4465 GN=rpoB PE=3 ...	[more]
Q5QA72	6.6e-13	78.26	DNA-directed RNA polymerase subunit beta OS=Acorus gramineus OX=55184 GN=rpoB PE...	[more]
A4QJA7	6.6e-13	78.26	DNA-directed RNA polymerase subunit beta OS=Aethionema cordifolium OX=434059 GN=...	[more]

BLAST of MS016145.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0S0ZKY2	2.9e-11	80.43	DNA-directed RNA polymerase subunit beta (Fragment) OS=Apodytes dimidiata OX=159...	[more]
A0A218KG28	3.8e-11	82.61	DNA-directed RNA polymerase subunit beta OS=Cucumis sativus var. hardwickii OX=3...	[more]
A0A6H0ETN6	3.8e-11	82.61	DNA-directed RNA polymerase subunit beta OS=Trichosanthes kirilowii OX=3677 GN=r...	[more]
A0A1X9Q1B9	3.8e-11	82.61	DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3...	[more]
A0A249RZI0	3.8e-11	82.61	DNA-directed RNA polymerase subunit beta OS=Cucumis melo var. cantalupensis OX=3...	[more]

BLAST of MS016145.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00190.1	4.7e-14	78.26	RNA polymerase subunit beta	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS016145	MS016145	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS016145.1-cds	MS016145.1-cds-scaffold9_2:679280..679375	CDS
MS016145.1-cds	MS016145.1-cds-scaffold9_2:679378..679416	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS016145.1	MS016145.1-protein	polypeptide