MS014581.1 (mRNA) Bitter gourd (TR) v1

Overview
NameMS014581.1
TypemRNA
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold553: 1054617 .. 1054964 (+)
Sequence length348
RNA-Seq ExpressionMS014581.1
SyntenyMS014581.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AACAGTACTACAGGAGTTGCAATGGCGCTCCTCATTTCGGCGCTGACTCTGTGTGCCAACAACAGCAACTGCACTGCTGCTCCTCTAAGTCCTTCCAATTTCGACAACGACACCCTCGTCATCGCTGCCTCGATGCGGTGCGATAGCCGCACCGAAGAATGCCTCGCCCAAGAAGACAACGAGTCGGCATTTCCGAGCTTGGTAAAGTCGATTAAGTTTGATAGTCCAAGAACCGGAAACCAGAAGAAACCTATATGTTTTCGGCAGGGAAGGTATAGATGCCTCGACGAGGGACACCCAATTCCCAACCCAGAAACTTGTGCTCATTATAAGCGCAACTTCTGTCAT

mRNA sequence

AACAGTACTACAGGAGTTGCAATGGCGCTCCTCATTTCGGCGCTGACTCTGTGTGCCAACAACAGCAACTGCACTGCTGCTCCTCTAAGTCCTTCCAATTTCGACAACGACACCCTCGTCATCGCTGCCTCGATGCGGTGCGATAGCCGCACCGAAGAATGCCTCGCCCAAGAAGACAACGAGTCGGCATTTCCGAGCTTGGTAAAGTCGATTAAGTTTGATAGTCCAAGAACCGGAAACCAGAAGAAACCTATATGTTTTCGGCAGGGAAGGTATAGATGCCTCGACGAGGGACACCCAATTCCCAACCCAGAAACTTGTGCTCATTATAAGCGCAACTTCTGTCAT

Coding sequence (CDS)

AACAGTACTACAGGAGTTGCAATGGCGCTCCTCATTTCGGCGCTGACTCTGTGTGCCAACAACAGCAACTGCACTGCTGCTCCTCTAAGTCCTTCCAATTTCGACAACGACACCCTCGTCATCGCTGCCTCGATGCGGTGCGATAGCCGCACCGAAGAATGCCTCGCCCAAGAAGACAACGAGTCGGCATTTCCGAGCTTGGTAAAGTCGATTAAGTTTGATAGTCCAAGAACCGGAAACCAGAAGAAACCTATATGTTTTCGGCAGGGAAGGTATAGATGCCTCGACGAGGGACACCCAATTCCCAACCCAGAAACTTGTGCTCATTATAAGCGCAACTTCTGTCAT

Protein sequence

NSTTGVAMALLISALTLCANNSNCTAAPLSPSNFDNDTLVIAASMRCDSRTEECLAQEDNESAFPSLVKSIKFDSPRTGNQKKPICFRQGRYRCLDEGHPIPNPETCAHYKRNFCH
Homology
[Close]
BLAST of MS014581.1 vs. NCBI nr
Match: KAG6607071.1 (hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-11
Identity = 46/115 (40.00%), Postives = 64/115 (55.65%), Query Frame = 0 

Query: 1   NSTTGVAMALLISALTLCANNSNCTAAPLSPSNFDNDTLVIAASMRCDSRTEECLAQE-D 60
           +++ GV  A  +    L  + S+C  A  +PS++ N+T+  AASM CD R EEC+ +E D
Sbjct: 5   SNSGGVMAAAAMGVFILVLSGSDCNVASPTPSSYGNNTVAAAASMWCDGRVEECVTREGD 64

Query: 61  NESAFPSLVKSI-KFDSPRTGNQKKPICFRQGRYR-CLDEGHPIPNPETCAHYKR 113
           + SAFPSL  S  K+ SP + N  K +C R   YR C +     PNP  C  Y R
Sbjct: 65  SASAFPSLQTSTRKYISPSSVNSNKAVCERPDEYRSCFNPRRSNPNPNNCGRYTR 119

[Close]
BLAST of MS014581.1 vs. NCBI nr
Match: KAG6607070.1 (hypothetical protein SDJN03_00412, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.3 bits (181), Expect = 7.6e-10
Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = 0 

Query: 1   NSTTGVAMALLISA----LTLCANNSNCTAAPLSPSNFDNDTLVIAASMRCDSRTEECLA 60
           +S +G  MA   +A      L  + S+C+ A  +PS++ N T+  AASM CD R EEC+ 
Sbjct: 4   SSNSGAVMAAAAAAAMGVFILMLSGSHCSVASPTPSSYGNITVAAAASMWCDGRVEECVT 63

Query: 61  QEDN-ESAFPSLVKSI-KFDSPRTGNQKKPICFRQGRYR-CLDEGHPIPNPETCAHYKR 113
           +ED+ ESAFPSL+ S  KF S  T N+ KP+C R G Y+ C +        + C  Y R
Sbjct: 64  REDDGESAFPSLLASTPKFISFPTRNRNKPVCERPGDYKSCFNARRTNTKNDNCGTYGR 122

The following BLAST results are available for this feature:
BLAST of MS014581.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6607071.11.4e-1140.00hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607070.17.6e-1040.34hypothetical protein SDJN03_00412, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of MS014581.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS014581.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS014581.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MS014581MS014581gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MS014581.1-cdsMS014581.1-cds-scaffold553:1054617..1054964CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MS014581.1MS014581.1-proteinpolypeptide