MS012947.1 (mRNA) Bitter gourd (TR) v1

Overview
NameMS012947.1
TypemRNA
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDUF4283 domain-containing protein
Locationscaffold38: 797615 .. 797734 (+)
Sequence length120
RNA-Seq ExpressionMS012947.1
SyntenyMS012947.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTAATTATCAGACACCCAAGATTCATGGAACTTTCACGAGAGAGGCAGCTGTTCAATTCGATGAATTCGATTCTTTGTTAGAAAGTTACTATTTTCAAGGCAACTCTGTCATCCCTCCT

mRNA sequence

GTTAATTATCAGACACCCAAGATTCATGGAACTTTCACGAGAGAGGCAGCTGTTCAATTCGATGAATTCGATTCTTTGTTAGAAAGTTACTATTTTCAAGGCAACTCTGTCATCCCTCCT

Coding sequence (CDS)

GTTAATTATCAGACACCCAAGATTCATGGAACTTTCACGAGAGAGGCAGCTGTTCAATTCGATGAATTCGATTCTTTGTTAGAAAGTTACTATTTTCAAGGCAACTCTGTCATCCCTCCT

Protein sequence

VNYQTPKIHGTFTREAAVQFDEFDSLLESYYFQGNSVIPP
Homology
[Close]
BLAST of MS012947.1 vs. ExPASy TrEMBL
Match: A0A5A7VKI3 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00160 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.8e-04
Identity = 22/37 (59.46%), Postives = 27/37 (72.97%), Query Frame = 0 

Query: 4   QTPKIHGTFTREAAVQFDEFDSLLESYYFQGNSVIPP 41
           + P IHGTFTREAA +FDEF+   E Y+F+GN  I P
Sbjct: 293 RNPSIHGTFTREAARRFDEFNLNSEQYFFEGNLAISP 329

[Close]
BLAST of MS012947.1 vs. ExPASy TrEMBL
Match: E5GB30 (DUF4283 domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.8e-04
Identity = 22/37 (59.46%), Postives = 27/37 (72.97%), Query Frame = 0 

Query: 4   QTPKIHGTFTREAAVQFDEFDSLLESYYFQGNSVIPP 41
           + P IHGTFTREAA +FDEF+   E Y+F+GN  I P
Sbjct: 301 RNPSIHGTFTREAARRFDEFNLNSEQYFFEGNLAISP 337

The following BLAST results are available for this feature:
BLAST of MS012947.1 vs.
Match NameE-valueIdentityDescription
BLAST of MS012947.1 vs.
Match NameE-valueIdentityDescription
BLAST of MS012947.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VKI38.8e-0459.46DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
E5GB308.8e-0459.46DUF4283 domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=... [more]
BLAST of MS012947.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MS012947MS012947gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MS012947.1-cdsMS012947.1-cds-scaffold38:797615..797734CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MS012947.1MS012947.1-proteinpolypeptide