MS012778.1 (mRNA) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTGATTCAAGCTCACTCCCCAAATCCACACTTCTTCTTTCTTGCCCCAAACCCTTCAGTTTCCCGCCACTTCTCGCTCCATGGTGAGACGTCTTGATTTTGTTTTGCCTTTTCTCTTCTTTTATATGTAGAATTGGAATGTTTATCGAGTTCTACCATCAGAGAATTGCGATTTTTTGTTGTTGTGAAAATTAATTGTTTTGTATTGAATTTTCTGCACGCTCGTACAGTTTCTCATTTATGTGGACTCAAAGCACCGATAGGTCGACGAAGTGCACGAACGTCTAAAATTTCTGCCTCCGGGGAGCACAGCCCAACCAACAATTTGGGGAAGAAAAGGTACAAGCCTCTCAAATTGCAATTTCAAAATTTTCCGCAATCTATTCTATATGATGCATTGCCCTGCCCAAGAGTTGCAATGTACATTTCTTTTCCCAATTTTACGTAGAAAGGTTTTCGAACACATATCTCTGCTCAAAGCGAAGGAAAATATTTCTGAAAAAGAAGAGAATGATATGCTGGATTATCTATATACCACGCAATATCAAATGGGGGGCATTGTTGCCGTATCATTGGGTGAGTTTCCGGCATTCTGATATCTAAAATCATGGAATGTTCAAATTATTTATTTATGTTTTTAGTAAAGTTCTTCCAACTCAGGACGATCCTCCCTTTGTATTATTTCATTGTAAAGTTTATTTTCCTTTTACTTCTGAAGGACGTGCCTGTGATCAAAACAATGAAAGGTATACCCACTGTGTATATATGCGTTTCCAAAGAAAGGAAGACTTGGAGAAATTCTATGTGAACCCTTTCTATTCGCGAGTACTAAAGGAGCATGTGATGCCTTATTGCCATGTATGCCTCAACATGTAATACAAATACTCTCTTCATCTAACTTCCTTCCTTTTTTTTTATTCTTCCCTGTTCCCTCCATCTTTTTCTCAGTATCTGTTCAACTTATGAATGGGTTTACCGTCTATACCAGGGACTGATTCATGTAGATTATGAGTCGGAGGTGGAAGATGATATGCTTCCCATATTCCGAAAGGGAGAGGTTTGAACCAAAACTAAATTTCTTGCTAGCTTTTTGGACAAAAATGCAATCTCTAGGTGCCACTATAATGTATATCATTATTTAGTTTTTTTGAAGAACATTGCTTGTGTGATATAATGGATTTTCTGGGGACTTGAAATCACATCTATTAGTGTGAATTTCTTTTAGATTTGTGAAAGGGAAGTATCAGAATCTTTGGAGTGGGGAGAGCCATGAACTTGAAATACTGAGTGGAAGTGGGTTGCTGGACTTCTTTCAGGAAAAGGATACCGAATCTGGTCTACTGATTTTTTTTCCCCCTTCTTCTTATTATGTTATTTCTCATATATCACATGCTAAATCTGAAATGCGAGGAAGTTAGTACGACAATAGTGGGACTAAGGACAGATGTTTGAAATTCGAGAAATCTGAAATGCGAGGAATCTGGTCTACTGAGTTTTTGGAATAGTGTTTTTGTTTTGAGATGTTGACTACGTCGAGCTTAGTGGGATTTCCCCTTGCTTGGAAACAGGACTATTAGTATTGAAAAGTAGAATTTGTTCCACTTTGTTTTATGTCTTACAATGATCTCTGGTAATATGGGCTTGACAATACCTTTAAAATATTTAGTAGTCACAAAGAGCTTTGATGTCAGGAATTCAATTATGGTGTGGAGTTTGTGCTTCTCATTAAATTTCTTCAAGATTCATTTGGCCAACCTTTAGAAGATGCATTAAATTCTCTTGAGAGACTGACGATAGCAAATCCTTCCTTAATTGTCCAGTTTACGCAAGGTATATTTTTATATTGAATTATTTATTCTAAAACTTGGAGAGAAACATCAACATACATTATATATAGCTATCGAGTTTGAATTTGATGTGAATTACTAGTGACATGCATCCCTAAATATGTGATGAGATTATCTTTAGCTAACCAGTACTTGTAAGTTATTCTTTTCAGATATCAAGTAGTGGGATTTTTATGTTTTGAATTCATATCAGGTTTCAATTTTAATCCCAGTTGTAAGGAGTTTACACATGGAGTTGTTATACGATTTCGGTCAAGTAAGCACTTTTATGTCTTTCTATTAATTTATATCCAATAATGGGACCTTCAATGGCGGCCTCAATATAACTTGTTTTGCAGTTAATGCCTTCGAGATATTTACAGGCTGCTCAGATTACAAAGAAGTAAGATACCCTGTTGATCAAGTCATCATATTTGCAGTTATTATTTTCTTTTTTTTACCCCAATTTTTAGTTTGAACCACCACCATCTGTTTGTGATTTTAAAATATCTTCCTTCATTGTTGACTTCTAACTACAATCGGGGCAAAAAATTCCTTACGTTTCATGTCTGCTCCATATTCTGCATACTACCATTTCTTTTTCAAGTTAGAAATGAGAATAACCTAAAAACCCTGAAATTTGGAAATTTTTTTACCTCAAATTATGAATGCGTAATTGCCAAGTTTTACTCTGAATCATCTGAGAATTTTGTTGAATATGACTTGACTTTTGTCTAATATAGTGATTGCCTAATCAATTTTCATTTGGAAAGTAGATGTGGAGGTCTAAGTTCCAACCAATCATCCAGAAAACAGTTTCTCTTCACTTTTCTGTTGACCCAGTAGGGACTGAGATCATG ATGCTGATTCAAGCTCACTCCCCAAATCCACACTTCTTCTTTCTTGCCCCAAACCCTTCAGTTTCCCGCCACTTCTCGCTCCATGTTTCTCATTTATGTGGACTCAAAGCACCGATAGGTCGACGAAGTGCACGAACGTCTAAAATTTCTGCCTCCGGGGAGCACAGCCCAACCAACAATTTGGGGAAGAAAAGAAAGGTTTTCGAACACATATCTCTGCTCAAAGCGAAGGAAAATATTTCTGAAAAAGAAGAGAATGATATGCTGGATTATCTATATACCACGCAATATCAAATGGGGGGCATTGTTGCCGTATCATTGGGACGTGCCTGTGATCAAAACAATGAAAGGTATACCCACTGTGTATATATGCGTTTCCAAAGAAAGGAAGACTTGGAGAAATTCTATGTGAACCCTTTCTATTCGCGAGTACTAAAGGAGCATGTGATGCCTTATTGCCATGGACTGATTCATGTAGATTATGAGTCGGAGGTGGAAGATGATATGCTTCCCATATTCCGAAAGGGAGAGGAATTCAATTATGGTGTGGAGTTTGTGCTTCTCATTAAATTTCTTCAAGATTCATTTGGCCAACCTTTAGAAGATGCATTAAATTCTCTTGAGAGACTGACGATAGCAAATCCTTCCTTAATTGTCCAGTTTACGCAAGGTTTCAATTTTAATCCCAGTTGTAAGGAGTTTACACATGGAGTTGTTATACGATTTCGGTCAATTAATGCCTTCGAGATATTTACAGGCTGCTCAGATTACAAAGAAATGTGGAGGTCTAAGTTCCAACCAATCATCCAGAAAACAGTTTCTCTTCACTTTTCTGTTGACCCAGTAGGGACTGAGATCATG ATGCTGATTCAAGCTCACTCCCCAAATCCACACTTCTTCTTTCTTGCCCCAAACCCTTCAGTTTCCCGCCACTTCTCGCTCCATGTTTCTCATTTATGTGGACTCAAAGCACCGATAGGTCGACGAAGTGCACGAACGTCTAAAATTTCTGCCTCCGGGGAGCACAGCCCAACCAACAATTTGGGGAAGAAAAGAAAGGTTTTCGAACACATATCTCTGCTCAAAGCGAAGGAAAATATTTCTGAAAAAGAAGAGAATGATATGCTGGATTATCTATATACCACGCAATATCAAATGGGGGGCATTGTTGCCGTATCATTGGGACGTGCCTGTGATCAAAACAATGAAAGGTATACCCACTGTGTATATATGCGTTTCCAAAGAAAGGAAGACTTGGAGAAATTCTATGTGAACCCTTTCTATTCGCGAGTACTAAAGGAGCATGTGATGCCTTATTGCCATGGACTGATTCATGTAGATTATGAGTCGGAGGTGGAAGATGATATGCTTCCCATATTCCGAAAGGGAGAGGAATTCAATTATGGTGTGGAGTTTGTGCTTCTCATTAAATTTCTTCAAGATTCATTTGGCCAACCTTTAGAAGATGCATTAAATTCTCTTGAGAGACTGACGATAGCAAATCCTTCCTTAATTGTCCAGTTTACGCAAGGTTTCAATTTTAATCCCAGTTGTAAGGAGTTTACACATGGAGTTGTTATACGATTTCGGTCAATTAATGCCTTCGAGATATTTACAGGCTGCTCAGATTACAAAGAAATGTGGAGGTCTAAGTTCCAACCAATCATCCAGAAAACAGTTTCTCTTCACTTTTCTGTTGACCCAGTAGGGACTGAGATCATG MLIQAHSPNPHFFFLAPNPSVSRHFSLHVSHLCGLKAPIGRRSARTSKISASGEHSPTNNLGKKRKVFEHISLLKAKENISEKEENDMLDYLYTTQYQMGGIVAVSLGRACDQNNERYTHCVYMRFQRKEDLEKFYVNPFYSRVLKEHVMPYCHGLIHVDYESEVEDDMLPIFRKGEEFNYGVEFVLLIKFLQDSFGQPLEDALNSLERLTIANPSLIVQFTQGFNFNPSCKEFTHGVVIRFRSINAFEIFTGCSDYKEMWRSKFQPIIQKTVSLHFSVDPVGTEIM Homology
BLAST of MS012778.1 vs. NCBI nr
Match: XP_022136509.1 (stress-response A/B barrel domain-containing protein UP3 [Momordica charantia] >XP_022136510.1 stress-response A/B barrel domain-containing protein UP3 [Momordica charantia] >XP_022136511.1 stress-response A/B barrel domain-containing protein UP3 [Momordica charantia] >XP_022136512.1 stress-response A/B barrel domain-containing protein UP3 [Momordica charantia] >XP_022136513.1 stress-response A/B barrel domain-containing protein UP3 [Momordica charantia] >XP_022136514.1 stress-response A/B barrel domain-containing protein UP3 [Momordica charantia] >XP_022136515.1 stress-response A/B barrel domain-containing protein UP3 [Momordica charantia] >XP_022136516.1 stress-response A/B barrel domain-containing protein UP3 [Momordica charantia] >XP_022136518.1 stress-response A/B barrel domain-containing protein UP3 [Momordica charantia] >XP_022136519.1 stress-response A/B barrel domain-containing protein UP3 [Momordica charantia] >XP_022136520.1 stress-response A/B barrel domain-containing protein UP3 [Momordica charantia]) HSP 1 Score: 590.1 bits (1520), Expect = 1.0e-164 Identity = 285/287 (99.30%), Postives = 287/287 (100.00%), Query Frame = 0
BLAST of MS012778.1 vs. NCBI nr
Match: XP_022931509.1 (stress-response A/B barrel domain-containing protein UP3 [Cucurbita moschata] >XP_022931510.1 stress-response A/B barrel domain-containing protein UP3 [Cucurbita moschata] >XP_023552210.1 stress-response A/B barrel domain-containing protein UP3 isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 518.5 bits (1334), Expect = 3.8e-143 Identity = 253/287 (88.15%), Postives = 266/287 (92.68%), Query Frame = 0
BLAST of MS012778.1 vs. NCBI nr
Match: XP_023552209.1 (stress-response A/B barrel domain-containing protein UP3 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023552211.1 stress-response A/B barrel domain-containing protein UP3 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 517.3 bits (1331), Expect = 8.4e-143 Identity = 252/287 (87.80%), Postives = 266/287 (92.68%), Query Frame = 0
BLAST of MS012778.1 vs. NCBI nr
Match: XP_038896518.1 (stress-response A/B barrel domain-containing protein UP3 [Benincasa hispida] >XP_038896524.1 stress-response A/B barrel domain-containing protein UP3 [Benincasa hispida]) HSP 1 Score: 516.5 bits (1329), Expect = 1.4e-142 Identity = 254/287 (88.50%), Postives = 264/287 (91.99%), Query Frame = 0
BLAST of MS012778.1 vs. NCBI nr
Match: XP_022985456.1 (stress-response A/B barrel domain-containing protein UP3 isoform X1 [Cucurbita maxima] >XP_022985457.1 stress-response A/B barrel domain-containing protein UP3 isoform X1 [Cucurbita maxima]) HSP 1 Score: 513.1 bits (1320), Expect = 1.6e-141 Identity = 250/287 (87.11%), Postives = 266/287 (92.68%), Query Frame = 0
BLAST of MS012778.1 vs. ExPASy Swiss-Prot
Match: Q9SYD8 (Stress-response A/B barrel domain-containing protein DABB1 OS=Arabidopsis thaliana OX=3702 GN=DABB1 PE=1 SV=1) HSP 1 Score: 49.7 bits (117), Expect = 6.5e-05 Identity = 49/219 (22.37%), Postives = 98/219 (44.75%), Query Frame = 0
BLAST of MS012778.1 vs. ExPASy TrEMBL
Match: A0A6J1C445 (stress-response A/B barrel domain-containing protein UP3 OS=Momordica charantia OX=3673 GN=LOC111008201 PE=4 SV=1) HSP 1 Score: 590.1 bits (1520), Expect = 4.9e-165 Identity = 285/287 (99.30%), Postives = 287/287 (100.00%), Query Frame = 0
BLAST of MS012778.1 vs. ExPASy TrEMBL
Match: A0A6J1EUF6 (stress-response A/B barrel domain-containing protein UP3 OS=Cucurbita moschata OX=3662 GN=LOC111437663 PE=4 SV=1) HSP 1 Score: 518.5 bits (1334), Expect = 1.8e-143 Identity = 253/287 (88.15%), Postives = 266/287 (92.68%), Query Frame = 0
BLAST of MS012778.1 vs. ExPASy TrEMBL
Match: A0A6J1J4Y2 (stress-response A/B barrel domain-containing protein UP3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483461 PE=4 SV=1) HSP 1 Score: 513.1 bits (1320), Expect = 7.7e-142 Identity = 250/287 (87.11%), Postives = 266/287 (92.68%), Query Frame = 0
BLAST of MS012778.1 vs. ExPASy TrEMBL
Match: A0A0A0KUW3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G049070 PE=4 SV=1) HSP 1 Score: 503.4 bits (1295), Expect = 6.1e-139 Identity = 246/287 (85.71%), Postives = 262/287 (91.29%), Query Frame = 0
BLAST of MS012778.1 vs. ExPASy TrEMBL
Match: A0A1S4DYT7 (stress-response A/B barrel domain-containing protein UP3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493150 PE=4 SV=1) HSP 1 Score: 500.4 bits (1287), Expect = 5.1e-138 Identity = 244/287 (85.02%), Postives = 259/287 (90.24%), Query Frame = 0
BLAST of MS012778.1 vs. TAIR 10
Match: AT2G32500.1 (Stress responsive alpha-beta barrel domain protein ) HSP 1 Score: 307.0 bits (785), Expect = 1.6e-83 Identity = 157/281 (55.87%), Postives = 200/281 (71.17%), Query Frame = 0
BLAST of MS012778.1 vs. TAIR 10
Match: AT1G51360.1 (dimeric A/B barrel domainS-protein 1 ) HSP 1 Score: 49.7 bits (117), Expect = 4.6e-06 Identity = 49/219 (22.37%), Postives = 98/219 (44.75%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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