MS012515.1 (mRNA) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AAGATAAGGTTAGCCATATCCACAAGCTCTGATTTCACTATCCAAGTCCACGTTAAAGCCACACGACCATCCTCTTCTCTTCAATATCCCAACCCCTCACCATCACCATCCCATTTCAGCAGCAAAATGACCACCACCACCACTGCACTTTGCAGCCCCATTACCTCCTTCCTCGGCACGGCGAGGCCGAGGCCGGTCTCCAATGTGGGCGAAGGCCTGTTCGGGCTGCAGAAGGGCTGCAGCCGCAGCGGGCGAGTGACCGCGATGGCAACCTACAAGGTGAAACTAATAACACCAAGTGGAGAGAAAGTGGTCGACTGTTTAGACAGTGATTACATTCTAGATGCAGCAGAGGCTAAAGGGTTGGAACTTCCACACTCGTGCAGAGCAGGAGCATGTTCTTCTTGTGTTGGGAAACTAAAATCAGGGAAACTGGATCAATCAGATGTTAGTTTCCTTGATGAGGATCAGATAGAAGAAGGCTGGGTTCTTACTTGCCTGGCTTCTCCCATGTCTGATGTTGTCATTGAGACCCACAAGGCAGAGGAGTTTCCTGGT AAGATAAGGTTAGCCATATCCACAAGCTCTGATTTCACTATCCAAGTCCACGTTAAAGCCACACGACCATCCTCTTCTCTTCAATATCCCAACCCCTCACCATCACCATCCCATTTCAGCAGCAAAATGACCACCACCACCACTGCACTTTGCAGCCCCATTACCTCCTTCCTCGGCACGGCGAGGCCGAGGCCGGTCTCCAATGTGGGCGAAGGCCTGTTCGGGCTGCAGAAGGGCTGCAGCCGCAGCGGGCGAGTGACCGCGATGGCAACCTACAAGGTGAAACTAATAACACCAAGTGGAGAGAAAGTGGTCGACTGTTTAGACAGTGATTACATTCTAGATGCAGCAGAGGCTAAAGGGTTGGAACTTCCACACTCGTGCAGAGCAGGAGCATGTTCTTCTTGTGTTGGGAAACTAAAATCAGGGAAACTGGATCAATCAGATGTTAGTTTCCTTGATGAGGATCAGATAGAAGAAGGCTGGGTTCTTACTTGCCTGGCTTCTCCCATGTCTGATGTTGTCATTGAGACCCACAAGGCAGAGGAGTTTCCTGGT AAGATAAGGTTAGCCATATCCACAAGCTCTGATTTCACTATCCAAGTCCACGTTAAAGCCACACGACCATCCTCTTCTCTTCAATATCCCAACCCCTCACCATCACCATCCCATTTCAGCAGCAAAATGACCACCACCACCACTGCACTTTGCAGCCCCATTACCTCCTTCCTCGGCACGGCGAGGCCGAGGCCGGTCTCCAATGTGGGCGAAGGCCTGTTCGGGCTGCAGAAGGGCTGCAGCCGCAGCGGGCGAGTGACCGCGATGGCAACCTACAAGGTGAAACTAATAACACCAAGTGGAGAGAAAGTGGTCGACTGTTTAGACAGTGATTACATTCTAGATGCAGCAGAGGCTAAAGGGTTGGAACTTCCACACTCGTGCAGAGCAGGAGCATGTTCTTCTTGTGTTGGGAAACTAAAATCAGGGAAACTGGATCAATCAGATGTTAGTTTCCTTGATGAGGATCAGATAGAAGAAGGCTGGGTTCTTACTTGCCTGGCTTCTCCCATGTCTGATGTTGTCATTGAGACCCACAAGGCAGAGGAGTTTCCTGGT KIRLAISTSSDFTIQVHVKATRPSSSLQYPNPSPSPSHFSSKMTTTTTALCSPITSFLGTARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEEFPG Homology
BLAST of MS012515.1 vs. NCBI nr
Match: XP_022136605.1 (ferredoxin-2-like [Momordica charantia]) HSP 1 Score: 292.7 bits (748), Expect = 2.2e-75 Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0
BLAST of MS012515.1 vs. NCBI nr
Match: XP_022941964.1 (ferredoxin-like [Cucurbita moschata] >XP_022983176.1 ferredoxin-like [Cucurbita maxima] >XP_023547581.1 ferredoxin-like [Cucurbita pepo subsp. pepo] >KAG6600367.1 Ferredoxin-2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031026.1 Ferredoxin-2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 185.3 bits (469), Expect = 4.9e-43 Identity = 95/147 (64.63%), Postives = 113/147 (76.87%), Query Frame = 0
BLAST of MS012515.1 vs. NCBI nr
Match: XP_022136608.1 (ferredoxin [Momordica charantia]) HSP 1 Score: 179.9 bits (455), Expect = 2.1e-41 Identity = 87/120 (72.50%), Postives = 99/120 (82.50%), Query Frame = 0
BLAST of MS012515.1 vs. NCBI nr
Match: XP_022136604.1 (ferredoxin-like [Momordica charantia]) HSP 1 Score: 179.9 bits (455), Expect = 2.1e-41 Identity = 100/146 (68.49%), Postives = 111/146 (76.03%), Query Frame = 0
BLAST of MS012515.1 vs. NCBI nr
Match: XP_008456215.1 (PREDICTED: ferredoxin-like [Cucumis melo] >KAA0038965.1 ferredoxin-like [Cucumis melo var. makuwa]) HSP 1 Score: 175.3 bits (443), Expect = 5.1e-40 Identity = 90/134 (67.16%), Postives = 104/134 (77.61%), Query Frame = 0
BLAST of MS012515.1 vs. ExPASy Swiss-Prot
Match: O04090 (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD1 PE=1 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 5.8e-39 Identity = 86/144 (59.72%), Postives = 106/144 (73.61%), Query Frame = 0
BLAST of MS012515.1 vs. ExPASy Swiss-Prot
Match: P00221 (Ferredoxin-1, chloroplastic OS=Spinacia oleracea OX=3562 GN=PETF PE=1 SV=2) HSP 1 Score: 161.8 bits (408), Expect = 7.6e-39 Identity = 84/146 (57.53%), Postives = 103/146 (70.55%), Query Frame = 0
BLAST of MS012515.1 vs. ExPASy Swiss-Prot
Match: P16972 (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD2 PE=1 SV=1) HSP 1 Score: 160.6 bits (405), Expect = 1.7e-38 Identity = 86/145 (59.31%), Postives = 105/145 (72.41%), Query Frame = 0
BLAST of MS012515.1 vs. ExPASy Swiss-Prot
Match: O04683 (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1) HSP 1 Score: 160.2 bits (404), Expect = 2.2e-38 Identity = 82/146 (56.16%), Postives = 101/146 (69.18%), Query Frame = 0
BLAST of MS012515.1 vs. ExPASy Swiss-Prot
Match: Q9ZTS2 (Ferredoxin, chloroplastic OS=Capsicum annuum OX=4072 GN=AP1 PE=1 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 4.9e-38 Identity = 75/123 (60.98%), Postives = 92/123 (74.80%), Query Frame = 0
BLAST of MS012515.1 vs. ExPASy TrEMBL
Match: A0A6J1C4E2 (Ferredoxin OS=Momordica charantia OX=3673 GN=LOC111008271 PE=3 SV=1) HSP 1 Score: 292.7 bits (748), Expect = 1.1e-75 Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0
BLAST of MS012515.1 vs. ExPASy TrEMBL
Match: A0A6J1J1D5 (Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111481826 PE=3 SV=1) HSP 1 Score: 185.3 bits (469), Expect = 2.4e-43 Identity = 95/147 (64.63%), Postives = 113/147 (76.87%), Query Frame = 0
BLAST of MS012515.1 vs. ExPASy TrEMBL
Match: A0A6J1FPZ2 (Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111447172 PE=3 SV=1) HSP 1 Score: 185.3 bits (469), Expect = 2.4e-43 Identity = 95/147 (64.63%), Postives = 113/147 (76.87%), Query Frame = 0
BLAST of MS012515.1 vs. ExPASy TrEMBL
Match: A0A6J1C4S7 (Ferredoxin OS=Momordica charantia OX=3673 GN=LOC111008270 PE=3 SV=1) HSP 1 Score: 179.9 bits (455), Expect = 1.0e-41 Identity = 100/146 (68.49%), Postives = 111/146 (76.03%), Query Frame = 0
BLAST of MS012515.1 vs. ExPASy TrEMBL
Match: A0A6J1C815 (Ferredoxin OS=Momordica charantia OX=3673 GN=LOC111008273 PE=3 SV=1) HSP 1 Score: 179.9 bits (455), Expect = 1.0e-41 Identity = 87/120 (72.50%), Postives = 99/120 (82.50%), Query Frame = 0
BLAST of MS012515.1 vs. TAIR 10
Match: AT1G10960.1 (ferredoxin 1 ) HSP 1 Score: 162.2 bits (409), Expect = 4.1e-40 Identity = 86/144 (59.72%), Postives = 106/144 (73.61%), Query Frame = 0
BLAST of MS012515.1 vs. TAIR 10
Match: AT1G60950.1 (2Fe-2S ferredoxin-like superfamily protein ) HSP 1 Score: 160.6 bits (405), Expect = 1.2e-39 Identity = 86/145 (59.31%), Postives = 105/145 (72.41%), Query Frame = 0
BLAST of MS012515.1 vs. TAIR 10
Match: AT2G27510.1 (ferredoxin 3 ) HSP 1 Score: 121.7 bits (304), Expect = 6.2e-28 Identity = 62/111 (55.86%), Postives = 78/111 (70.27%), Query Frame = 0
BLAST of MS012515.1 vs. TAIR 10
Match: AT5G10000.1 (ferredoxin 4 ) HSP 1 Score: 112.5 bits (280), Expect = 3.8e-25 Identity = 55/111 (49.55%), Postives = 78/111 (70.27%), Query Frame = 0
BLAST of MS012515.1 vs. TAIR 10
Match: AT1G32550.1 (2Fe-2S ferredoxin-like superfamily protein ) HSP 1 Score: 63.9 bits (154), Expect = 1.5e-10 Identity = 27/75 (36.00%), Postives = 45/75 (60.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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