MS012515 (gene) Bitter gourd (TR) v1

Overview


Name	MS012515
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ferredoxin
Location	scaffold63: 1244692 .. 1245249 (+)
RNA-Seq Expression	MS012515
Synteny	MS012515

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGATAAGGTTAGCCATATCCACAAGCTCTGATTTCACTATCCAAGTCCACGTTAAAGCCACACGACCATCCTCTTCTCTTCAATATCCCAACCCCTCACCATCACCATCCCATTTCAGCAGCAAAATGACCACCACCACCACTGCACTTTGCAGCCCCATTACCTCCTTCCTCGGCACGGCGAGGCCGAGGCCGGTCTCCAATGTGGGCGAAGGCCTGTTCGGGCTGCAGAAGGGCTGCAGCCGCAGCGGGCGAGTGACCGCGATGGCAACCTACAAGGTGAAACTAATAACACCAAGTGGAGAGAAAGTGGTCGACTGTTTAGACAGTGATTACATTCTAGATGCAGCAGAGGCTAAAGGGTTGGAACTTCCACACTCGTGCAGAGCAGGAGCATGTTCTTCTTGTGTTGGGAAACTAAAATCAGGGAAACTGGATCAATCAGATGTTAGTTTCCTTGATGAGGATCAGATAGAAGAAGGCTGGGTTCTTACTTGCCTGGCTTCTCCCATGTCTGATGTTGTCATTGAGACCCACAAGGCAGAGGAGTTTCCTGGT

mRNA sequence

AAGATAAGGTTAGCCATATCCACAAGCTCTGATTTCACTATCCAAGTCCACGTTAAAGCCACACGACCATCCTCTTCTCTTCAATATCCCAACCCCTCACCATCACCATCCCATTTCAGCAGCAAAATGACCACCACCACCACTGCACTTTGCAGCCCCATTACCTCCTTCCTCGGCACGGCGAGGCCGAGGCCGGTCTCCAATGTGGGCGAAGGCCTGTTCGGGCTGCAGAAGGGCTGCAGCCGCAGCGGGCGAGTGACCGCGATGGCAACCTACAAGGTGAAACTAATAACACCAAGTGGAGAGAAAGTGGTCGACTGTTTAGACAGTGATTACATTCTAGATGCAGCAGAGGCTAAAGGGTTGGAACTTCCACACTCGTGCAGAGCAGGAGCATGTTCTTCTTGTGTTGGGAAACTAAAATCAGGGAAACTGGATCAATCAGATGTTAGTTTCCTTGATGAGGATCAGATAGAAGAAGGCTGGGTTCTTACTTGCCTGGCTTCTCCCATGTCTGATGTTGTCATTGAGACCCACAAGGCAGAGGAGTTTCCTGGT

Coding sequence (CDS)

AAGATAAGGTTAGCCATATCCACAAGCTCTGATTTCACTATCCAAGTCCACGTTAAAGCCACACGACCATCCTCTTCTCTTCAATATCCCAACCCCTCACCATCACCATCCCATTTCAGCAGCAAAATGACCACCACCACCACTGCACTTTGCAGCCCCATTACCTCCTTCCTCGGCACGGCGAGGCCGAGGCCGGTCTCCAATGTGGGCGAAGGCCTGTTCGGGCTGCAGAAGGGCTGCAGCCGCAGCGGGCGAGTGACCGCGATGGCAACCTACAAGGTGAAACTAATAACACCAAGTGGAGAGAAAGTGGTCGACTGTTTAGACAGTGATTACATTCTAGATGCAGCAGAGGCTAAAGGGTTGGAACTTCCACACTCGTGCAGAGCAGGAGCATGTTCTTCTTGTGTTGGGAAACTAAAATCAGGGAAACTGGATCAATCAGATGTTAGTTTCCTTGATGAGGATCAGATAGAAGAAGGCTGGGTTCTTACTTGCCTGGCTTCTCCCATGTCTGATGTTGTCATTGAGACCCACAAGGCAGAGGAGTTTCCTGGT

Protein sequence

KIRLAISTSSDFTIQVHVKATRPSSSLQYPNPSPSPSHFSSKMTTTTTALCSPITSFLGTARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEEFPG

Homology

[Close]

BLAST of MS012515 vs. NCBI nr
Match: XP_022136605.1 (ferredoxin-2-like [Momordica charantia])

HSP 1 Score: 292.7 bits (748), Expect = 2.2e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 43  MTTTTTALCSPITSFLGTARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGE 102
           MTTTTTALCSPITSFLGTARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGE
Sbjct: 1   MTTTTTALCSPITSFLGTARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGE 60

Query: 103 KVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEEGW 162
           KVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEEGW
Sbjct: 61  KVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEEGW 120

Query: 163 VLTCLASPMSDVVIETHKAEEFPG 187
           VLTCLASPMSDVVIETHKAEEFPG
Sbjct: 121 VLTCLASPMSDVVIETHKAEEFPG 144

[Close]

BLAST of MS012515 vs. NCBI nr
Match: XP_022941964.1 (ferredoxin-like [Cucurbita moschata] >XP_022983176.1 ferredoxin-like [Cucurbita maxima] >XP_023547581.1 ferredoxin-like [Cucurbita pepo subsp. pepo] >KAG6600367.1 Ferredoxin-2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031026.1 Ferredoxin-2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 185.3 bits (469), Expect = 4.9e-43
Identity = 95/147 (64.63%), Postives = 113/147 (76.87%), Query Frame = 0


Query: 46  TTTALCSPI--TSFLGTARP------RPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLI 105
           +TTAL +PI  TSFL   +P      RP  NVG+ LFGL+ G SR G +T MA YKVKLI
Sbjct: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMA-YKVKLI 62

Query: 106 TPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQ 165
           TP GEK ++C   DYILDAAE  G++LP+SCRAGACSSC+GKLKSGK+DQSD SFLD+ Q
Sbjct: 63  TPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQ 122

Query: 166 IEEGWVLTCLASPMSDVVIETHKAEEF 185
           +E+GWVLTC+A P SD+VIETHK E F
Sbjct: 123 MEDGWVLTCVARPESDIVIETHKEEVF 148

[Close]

BLAST of MS012515 vs. NCBI nr
Match: XP_022136608.1 (ferredoxin [Momordica charantia])

HSP 1 Score: 179.9 bits (455), Expect = 2.1e-41
Identity = 87/120 (72.50%), Postives = 99/120 (82.50%), Query Frame = 0


Query: 64  RPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLE 123
           R VSN G+GLFGL KG SR GRVTAMATYKVKLITP GEK   C D  Y+LD AE +G +
Sbjct: 26  RSVSNFGQGLFGL-KGGSRGGRVTAMATYKVKLITPEGEKEFSCPDDVYVLDQAEEQGFD 85

Query: 124 LPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEE 183
           LP+SCRAG+CSSC GK+ SGK+DQSD SFLD+DQ+EEGWVLTC+A P SD+VIETHK EE
Sbjct: 86  LPYSCRAGSCSSCAGKVVSGKVDQSDNSFLDDDQLEEGWVLTCVAYPQSDIVIETHKEEE 144

[Close]

BLAST of MS012515 vs. NCBI nr
Match: XP_022136604.1 (ferredoxin-like [Momordica charantia])

HSP 1 Score: 179.9 bits (455), Expect = 2.1e-41
Identity = 100/146 (68.49%), Postives = 111/146 (76.03%), Query Frame = 0


Query: 46  TTTALCSPI--TSFL---GTARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPS 105
           +TTAL  PI  TSFL     A  RP  N+G+G+FGL KG SR GRV AMA YKV LITPS
Sbjct: 3   STTALSGPIPATSFLRGQPAAGLRPFPNMGQGVFGL-KGGSRGGRVRAMA-YKVTLITPS 62

Query: 106 GEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEE 165
           GEK V C    YILDAAE  GL+LP+SCRAGACSSCVGK+ SGK+DQSD SFLD+DQ+ E
Sbjct: 63  GEKSVKCPPDSYILDAAEEDGLDLPYSCRAGACSSCVGKVVSGKVDQSDNSFLDDDQMAE 122

Query: 166 GWVLTCLASPMSDVVIETHKAEEFPG 187
           GWVLTC+A P SDVVIETHK  EF G
Sbjct: 123 GWVLTCVAYPQSDVVIETHKEGEFSG 146

[Close]

BLAST of MS012515 vs. NCBI nr
Match: XP_008456215.1 (PREDICTED: ferredoxin-like [Cucumis melo] >KAA0038965.1 ferredoxin-like [Cucumis melo var. makuwa])

HSP 1 Score: 175.3 bits (443), Expect = 5.1e-40
Identity = 90/134 (67.16%), Postives = 104/134 (77.61%), Query Frame = 0


Query: 55  TSFLG----TARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDS 114
           TSFL     T   R   NVGE LFGLQK   R  RVTAMATYKVKLITPSG K + C D 
Sbjct: 9   TSFLRYQLLTTTLRSAPNVGECLFGLQK---RGSRVTAMATYKVKLITPSGVKEIKCPDD 68

Query: 115 DYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEEGWVLTCLASP 174
           +YIL+ AE +GL+LP+SCRAGACSSC GKL SGK+DQS++SFLD+DQI +GWV+ C+A P
Sbjct: 69  NYILNVAEDEGLDLPYSCRAGACSSCAGKLISGKVDQSNISFLDDDQIAKGWVINCMAYP 128

Query: 175 MSDVVIETHKAEEF 185
           +SDVVIETHK EEF
Sbjct: 129 LSDVVIETHKEEEF 139

[Close]

BLAST of MS012515 vs. ExPASy Swiss-Prot
Match: O04090 (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD1 PE=1 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 5.8e-39
Identity = 86/144 (59.72%), Postives = 106/144 (73.61%), Query Frame = 0


Query: 47  TTALCSPI--TSFLG------TARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLIT 106
           +TAL S I  TSFL       + R  P +N  + LFGL+   +R GRVTAMATYKVK IT
Sbjct: 3   STALSSAIVSTSFLRRQQTPISLRSLPFANT-QSLFGLKSSTARGGRVTAMATYKVKFIT 62

Query: 107 PSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQI 166
           P GE+ V+C +  Y+LDAAE  GL+LP+SCRAG+CSSC GK+ SG +DQSD SFLD++Q+
Sbjct: 63  PEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQM 122

Query: 167 EEGWVLTCLASPMSDVVIETHKAE 183
            EG+VLTC+A P SDVVIETHK E
Sbjct: 123 SEGYVLTCVAYPTSDVVIETHKEE 145

[Close]

BLAST of MS012515 vs. ExPASy Swiss-Prot
Match: P00221 (Ferredoxin-1, chloroplastic OS=Spinacia oleracea OX=3562 GN=PETF PE=1 SV=2)

HSP 1 Score: 161.8 bits (408), Expect = 7.6e-39
Identity = 84/146 (57.53%), Postives = 103/146 (70.55%), Query Frame = 0


Query: 43  MTTTTTALCSPITSFLGTARPRPV-----SNVGEGLFGLQKGCSRSGRVTAMATYKVKLI 102
           M  TTT +    T+F+   +  P+     SN G  LFGL+ G SR GR+T MA YKV L+
Sbjct: 1   MAATTTTMMGMATTFVPKPQAPPMMAALPSNTGRSLFGLKTG-SRGGRMT-MAAYKVTLV 60

Query: 103 TPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQ 162
           TP+G     C D  YILDAAE +G++LP+SCRAG+CSSC GKLK+G L+Q D SFLD+DQ
Sbjct: 61  TPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQ 120

Query: 163 IEEGWVLTCLASPMSDVVIETHKAEE 184
           I+EGWVLTC A P+SDV IETHK EE
Sbjct: 121 IDEGWVLTCAAYPVSDVTIETHKEEE 144

[Close]

BLAST of MS012515 vs. ExPASy Swiss-Prot
Match: P16972 (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD2 PE=1 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.7e-38
Identity = 86/145 (59.31%), Postives = 105/145 (72.41%), Query Frame = 0


Query: 47  TTALCSPI--TSFLG------TARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLIT 106
           +TAL S I  TSF+       + R  P +N  + LFGL+ G +R GRVTAMATYKVK IT
Sbjct: 3   STALSSAIVGTSFIRRSPAPISLRSLPSANT-QSLFGLKSGTARGGRVTAMATYKVKFIT 62

Query: 107 PSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQI 166
           P GE  V+C D  Y+LDAAE  G++LP+SCRAG+CSSC GK+ SG +DQSD SFLD++QI
Sbjct: 63  PEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQI 122

Query: 167 EEGWVLTCLASPMSDVVIETHKAEE 184
            EG+VLTC A P SDV IETHK E+
Sbjct: 123 GEGFVLTCAAYPTSDVTIETHKEED 146

[Close]

BLAST of MS012515 vs. ExPASy Swiss-Prot
Match: O04683 (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.2e-38
Identity = 82/146 (56.16%), Postives = 101/146 (69.18%), Query Frame = 0


Query: 43  MTTTTTALCSPITSFLGTARPRPV-----SNVGEGLFGLQKGCSRSGRVTAMATYKVKLI 102
           M  TT AL     S     +  P+     +NVG  LFGL+   SR GRVTAMA YKV L+
Sbjct: 1   MAATTAALSGATMSTAFAPKTPPMTAALPTNVGRALFGLKSSASR-GRVTAMAAYKVTLV 60

Query: 103 TPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQ 162
           TP G++ ++C D  YILDAAE  G++LP+SCRAG+CSSC GK+ SG ++Q D SFLD+DQ
Sbjct: 61  TPEGKQELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQ 120

Query: 163 IEEGWVLTCLASPMSDVVIETHKAEE 184
           I+EGWVLTC+A P  DV IETHK EE
Sbjct: 121 IKEGWVLTCVAYPTGDVTIETHKEEE 145

[Close]

BLAST of MS012515 vs. ExPASy Swiss-Prot
Match: Q9ZTS2 (Ferredoxin, chloroplastic OS=Capsicum annuum OX=4072 GN=AP1 PE=1 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.9e-38
Identity = 75/123 (60.98%), Postives = 92/123 (74.80%), Query Frame = 0


Query: 64  RPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLE 123
           +P+ NVGE LFGL+   +  G+VT MA+YKVKLITP G    DC D+ YILD AE  G +
Sbjct: 24  KPIPNVGEALFGLKS--ANGGKVTCMASYKVKLITPDGPIEFDCPDNVYILDQAEEAGHD 83

Query: 124 LPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEE 183
           LP+SCRAG+CSSC GK+  G +DQ+D +FLD+DQ+EEGWVLTC+A P SDV IETHK  E
Sbjct: 84  LPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAE 143

Query: 184 FPG 187
             G
Sbjct: 144 LVG 144

[Close]

BLAST of MS012515 vs. ExPASy TrEMBL
Match: A0A6J1C4E2 (Ferredoxin OS=Momordica charantia OX=3673 GN=LOC111008271 PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 1.1e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 43  MTTTTTALCSPITSFLGTARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGE 102
           MTTTTTALCSPITSFLGTARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGE
Sbjct: 1   MTTTTTALCSPITSFLGTARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGE 60

Query: 103 KVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEEGW 162
           KVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEEGW
Sbjct: 61  KVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEEGW 120

Query: 163 VLTCLASPMSDVVIETHKAEEFPG 187
           VLTCLASPMSDVVIETHKAEEFPG
Sbjct: 121 VLTCLASPMSDVVIETHKAEEFPG 144

[Close]

BLAST of MS012515 vs. ExPASy TrEMBL
Match: A0A6J1J1D5 (Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111481826 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 2.4e-43
Identity = 95/147 (64.63%), Postives = 113/147 (76.87%), Query Frame = 0


Query: 46  TTTALCSPI--TSFLGTARP------RPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLI 105
           +TTAL +PI  TSFL   +P      RP  NVG+ LFGL+ G SR G +T MA YKVKLI
Sbjct: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMA-YKVKLI 62

Query: 106 TPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQ 165
           TP GEK ++C   DYILDAAE  G++LP+SCRAGACSSC+GKLKSGK+DQSD SFLD+ Q
Sbjct: 63  TPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQ 122

Query: 166 IEEGWVLTCLASPMSDVVIETHKAEEF 185
           +E+GWVLTC+A P SD+VIETHK E F
Sbjct: 123 MEDGWVLTCVARPESDIVIETHKEEVF 148

[Close]

BLAST of MS012515 vs. ExPASy TrEMBL
Match: A0A6J1FPZ2 (Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111447172 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 2.4e-43
Identity = 95/147 (64.63%), Postives = 113/147 (76.87%), Query Frame = 0


Query: 46  TTTALCSPI--TSFLGTARP------RPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLI 105
           +TTAL +PI  TSFL   +P      RP  NVG+ LFGL+ G SR G +T MA YKVKLI
Sbjct: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMA-YKVKLI 62

Query: 106 TPSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQ 165
           TP GEK ++C   DYILDAAE  G++LP+SCRAGACSSC+GKLKSGK+DQSD SFLD+ Q
Sbjct: 63  TPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQ 122

Query: 166 IEEGWVLTCLASPMSDVVIETHKAEEF 185
           +E+GWVLTC+A P SD+VIETHK E F
Sbjct: 123 MEDGWVLTCVARPESDIVIETHKEEVF 148

[Close]

BLAST of MS012515 vs. ExPASy TrEMBL
Match: A0A6J1C4S7 (Ferredoxin OS=Momordica charantia OX=3673 GN=LOC111008270 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.0e-41
Identity = 100/146 (68.49%), Postives = 111/146 (76.03%), Query Frame = 0


Query: 46  TTTALCSPI--TSFL---GTARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPS 105
           +TTAL  PI  TSFL     A  RP  N+G+G+FGL KG SR GRV AMA YKV LITPS
Sbjct: 3   STTALSGPIPATSFLRGQPAAGLRPFPNMGQGVFGL-KGGSRGGRVRAMA-YKVTLITPS 62

Query: 106 GEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEE 165
           GEK V C    YILDAAE  GL+LP+SCRAGACSSCVGK+ SGK+DQSD SFLD+DQ+ E
Sbjct: 63  GEKSVKCPPDSYILDAAEEDGLDLPYSCRAGACSSCVGKVVSGKVDQSDNSFLDDDQMAE 122

Query: 166 GWVLTCLASPMSDVVIETHKAEEFPG 187
           GWVLTC+A P SDVVIETHK  EF G
Sbjct: 123 GWVLTCVAYPQSDVVIETHKEGEFSG 146

[Close]

BLAST of MS012515 vs. ExPASy TrEMBL
Match: A0A6J1C815 (Ferredoxin OS=Momordica charantia OX=3673 GN=LOC111008273 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.0e-41
Identity = 87/120 (72.50%), Postives = 99/120 (82.50%), Query Frame = 0


Query: 64  RPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSGEKVVDCLDSDYILDAAEAKGLE 123
           R VSN G+GLFGL KG SR GRVTAMATYKVKLITP GEK   C D  Y+LD AE +G +
Sbjct: 26  RSVSNFGQGLFGL-KGGSRGGRVTAMATYKVKLITPEGEKEFSCPDDVYVLDQAEEQGFD 85

Query: 124 LPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEE 183
           LP+SCRAG+CSSC GK+ SGK+DQSD SFLD+DQ+EEGWVLTC+A P SD+VIETHK EE
Sbjct: 86  LPYSCRAGSCSSCAGKVVSGKVDQSDNSFLDDDQLEEGWVLTCVAYPQSDIVIETHKEEE 144

[Close]

BLAST of MS012515 vs. TAIR 10
Match: AT1G10960.1 (ferredoxin 1 )

HSP 1 Score: 162.2 bits (409), Expect = 4.1e-40
Identity = 86/144 (59.72%), Postives = 106/144 (73.61%), Query Frame = 0


Query: 47  TTALCSPI--TSFLG------TARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLIT 106
           +TAL S I  TSFL       + R  P +N  + LFGL+   +R GRVTAMATYKVK IT
Sbjct: 3   STALSSAIVSTSFLRRQQTPISLRSLPFANT-QSLFGLKSSTARGGRVTAMATYKVKFIT 62

Query: 107 PSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQI 166
           P GE+ V+C +  Y+LDAAE  GL+LP+SCRAG+CSSC GK+ SG +DQSD SFLD++Q+
Sbjct: 63  PEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQM 122

Query: 167 EEGWVLTCLASPMSDVVIETHKAE 183
            EG+VLTC+A P SDVVIETHK E
Sbjct: 123 SEGYVLTCVAYPTSDVVIETHKEE 145

[Close]

BLAST of MS012515 vs. TAIR 10
Match: AT1G60950.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 160.6 bits (405), Expect = 1.2e-39
Identity = 86/145 (59.31%), Postives = 105/145 (72.41%), Query Frame = 0


Query: 47  TTALCSPI--TSFLG------TARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLIT 106
           +TAL S I  TSF+       + R  P +N  + LFGL+ G +R GRVTAMATYKVK IT
Sbjct: 3   STALSSAIVGTSFIRRSPAPISLRSLPSANT-QSLFGLKSGTARGGRVTAMATYKVKFIT 62

Query: 107 PSGEKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQI 166
           P GE  V+C D  Y+LDAAE  G++LP+SCRAG+CSSC GK+ SG +DQSD SFLD++QI
Sbjct: 63  PEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQI 122

Query: 167 EEGWVLTCLASPMSDVVIETHKAEE 184
            EG+VLTC A P SDV IETHK E+
Sbjct: 123 GEGFVLTCAAYPTSDVTIETHKEED 146

[Close]

BLAST of MS012515 vs. TAIR 10
Match: AT2G27510.1 (ferredoxin 3 )

HSP 1 Score: 121.7 bits (304), Expect = 6.2e-28
Identity = 62/111 (55.86%), Postives = 78/111 (70.27%), Query Frame = 0


Query: 74  FGLQKGCSRSGRVTAMATYKVKLITPSG-EKVVDCLDSDYILDAAEAKGLELPHSCRAGA 133
           FGL K  + SG  T  A YKVKL+ P G E   +  D  YILDAAE  G++LP+SCRAGA
Sbjct: 44  FGL-KCSANSGGATMSAVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGA 103

Query: 134 CSSCVGKLKSGKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEE 184
           CS+C G++ SG +DQSD SFL++  +E+G+VLTC+A P SD VI THK  E
Sbjct: 104 CSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETE 153

[Close]

BLAST of MS012515 vs. TAIR 10
Match: AT5G10000.1 (ferredoxin 4 )

HSP 1 Score: 112.5 bits (280), Expect = 3.8e-25
Identity = 55/111 (49.55%), Postives = 78/111 (70.27%), Query Frame = 0


Query: 74  FGLQKGCSRSGRVTAMATYKVKLITPSG-EKVVDCLDSDYILDAAEAKGLELPHSCRAGA 133
           FGL       G+V A  + KVKLI+P G E+ ++  +   IL++AE  GLELP+SCR+G 
Sbjct: 36  FGLSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGT 95

Query: 134 CSSCVGKLKSGKLDQSDVSFLDEDQIEEGWVLTCLASPMSDVVIETHKAEE 184
           C +C GKL SGK+DQS  SFL+E+QI++G++LTC+A P+ D V+ THK  +
Sbjct: 96  CGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSD 146

[Close]

BLAST of MS012515 vs. TAIR 10
Match: AT1G32550.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-10
Identity = 27/75 (36.00%), Postives = 45/75 (60.00%), Query Frame = 0


Query: 109 DSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEEGWVLTCLA 168
           +  YIL +AE++ + LP +CR G C+SC  ++KSG+L Q     +  +   +G+ L C+ 
Sbjct: 78  EDQYILHSAESQNISLPFACRHGCCTSCAVRVKSGELRQPQALGISAELKSQGYALLCVG 137

Query: 169 SPMSDVVIETHKAEE 184
            P SD+ +ET   +E
Sbjct: 138 FPTSDLEVETQDEDE 152

The following BLAST results are available for this feature:

BLAST of MS012515 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136605.1	2.2e-75	100.00	ferredoxin-2-like [Momordica charantia]	[more]
XP_022941964.1	4.9e-43	64.63	ferredoxin-like [Cucurbita moschata] >XP_022983176.1 ferredoxin-like [Cucurbita ...	[more]
XP_022136608.1	2.1e-41	72.50	ferredoxin [Momordica charantia]	[more]
XP_022136604.1	2.1e-41	68.49	ferredoxin-like [Momordica charantia]	[more]
XP_008456215.1	5.1e-40	67.16	PREDICTED: ferredoxin-like [Cucumis melo] >KAA0038965.1 ferredoxin-like [Cucumis...	[more]

BLAST of MS012515 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04090	5.8e-39	59.72	Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD1 PE=1 SV=1	[more]
P00221	7.6e-39	57.53	Ferredoxin-1, chloroplastic OS=Spinacia oleracea OX=3562 GN=PETF PE=1 SV=2	[more]
P16972	1.7e-38	59.31	Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD2 PE=1 SV=1	[more]
O04683	2.2e-38	56.16	Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1	[more]
Q9ZTS2	4.9e-38	60.98	Ferredoxin, chloroplastic OS=Capsicum annuum OX=4072 GN=AP1 PE=1 SV=1	[more]

BLAST of MS012515 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C4E2	1.1e-75	100.00	Ferredoxin OS=Momordica charantia OX=3673 GN=LOC111008271 PE=3 SV=1	[more]
A0A6J1J1D5	2.4e-43	64.63	Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111481826 PE=3 SV=1	[more]
A0A6J1FPZ2	2.4e-43	64.63	Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111447172 PE=3 SV=1	[more]
A0A6J1C4S7	1.0e-41	68.49	Ferredoxin OS=Momordica charantia OX=3673 GN=LOC111008270 PE=3 SV=1	[more]
A0A6J1C815	1.0e-41	72.50	Ferredoxin OS=Momordica charantia OX=3673 GN=LOC111008273 PE=3 SV=1	[more]

BLAST of MS012515 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10960.1	4.1e-40	59.72	ferredoxin 1	[more]
AT1G60950.1	1.2e-39	59.31	2Fe-2S ferredoxin-like superfamily protein	[more]
AT2G27510.1	6.2e-28	55.86	ferredoxin 3	[more]
AT5G10000.1	3.8e-25	49.55	ferredoxin 4	[more]
AT1G32550.1	1.5e-10	36.00	2Fe-2S ferredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 100..169 e-value: 1.3E-14 score: 53.9
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 92..182 score: 12.428819
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 94..177 e-value: 5.40697E-27 score: 95.9248
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAM	TIGR02008	TIGR02008	coord: 90..183 e-value: 4.9E-42 score: 139.6
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 89..185 e-value: 6.9E-33 score: 114.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..43
None	No IPR available	PANTHER	PTHR43112:SF17	FERREDOXIN-1, CHLOROPLASTIC	coord: 49..182
None	No IPR available	PANTHER	PTHR43112	FERREDOXIN	coord: 49..182
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 128..136
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 73..181

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012515.1	MS012515.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0051536	iron-sulfur cluster binding