MS008023.1 (mRNA) Bitter gourd (TR) v1

Overview
NameMS008023.1
TypemRNA
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCytochrome c oxidase subunit 1
Locationscaffold284: 219646 .. 219997 (-)
Sequence length348
RNA-Seq ExpressionMS008023.1
SyntenyMS008023.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTATTTACTGTAGGGTCCATCTTTTTGTTCACCATAGGAGGACTCACTAGAATAGTCCCGGCAAATTTAGGGATAGACATTGCTCTATGTGATACTTATTATGTGGTTGCACATTTCCATTATGTACTTCCTATGTGAGCCGTTTTTGCTTTATTTGCAGGATGTAGAAACTAATCACTATTGGGTGGGTAAAATCTTTTGTCGGACATACCCTGAAACTTTAGGTCAAATCCATTTTTGGATCACTTTTTTCGGGGTTAATCCGACCCTCTTTCCCATGCATTTCTTAGGGCTTTCGGGTATGCCACGTCGCATTCCTGATTATCCATATGCTTACGCTAGATGGAAT

mRNA sequence

ATGTTATTTACTGTAGGGTCCATCTTTTTGTTCACCATAGGAGGACTCACTAGAATAGTCCCGGCAAATTTAGGGATAGACATTGCTCTATGTGATACTTATTATGTGGTTGCACATTTCCATTATGTACTTCCTATGCCGTTTTTGCTTTATTTGCAGGATGTAGAAACTAATCACTATTGGGTGGGTAAAATCTTTTGTCGGACATACCCTGAAACTTTAGGTCAAATCCATTTTTGGATCACTTTTTTCGGGGTTAATCCGACCCTCTTTCCCATGCATTTCTTAGGGCTTTCGGGTATGCCACGTCGCATTCCTGATTATCCATATGCTTACGCTAGATGGAAT

Coding sequence (CDS)

ATGTTATTTACTGTAGGGTCCATCTTTTTGTTCACCATAGGAGGACTCACTAGAATAGTCCCGGCAAATTTAGGGATAGACATTGCTCTATGTGATACTTATTATGTGGTTGCACATTTCCATTATGTACTTCCTATGCCGTTTTTGCTTTATTTGCAGGATGTAGAAACTAATCACTATTGGGTGGGTAAAATCTTTTGTCGGACATACCCTGAAACTTTAGGTCAAATCCATTTTTGGATCACTTTTTTCGGGGTTAATCCGACCCTCTTTCCCATGCATTTCTTAGGGCTTTCGGGTATGCCACGTCGCATTCCTGATTATCCATATGCTTACGCTAGATGGAAT

Protein sequence

MLFTVGSIFLFTIGGLTRIVPANLGIDIALCDTYYVVAHFHYVLPMPFLLYLQDVETNHYWVGKIFCRTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYPYAYARWN
Homology
[Close]
BLAST of MS008023.1 vs. NCBI nr
Match: AAF77684.1 (cytochrome oxidase subunit 1, partial [Sarcandra grandifolia])

HSP 1 Score: 191.8 bits (486), Expect = 3.3e-45
Identity = 96/116 (82.76%), Postives = 98/116 (84.48%), Query Frame = 0 

Query: 1   MLFTVGSIFLFTIGGLTRIVPANLGIDIALCDTYYVVAHFHYVLPMPFLLYLQDVETNHY 60
           MLF VGSIFLFTIGGLT IVPAN G+DIAL DTYY VAHFHYVL M  +L L      HY
Sbjct: 305 MLFAVGSIFLFTIGGLTGIVPANSGLDIALHDTYYAVAHFHYVLSMGAVLAL--FAGFHY 364

Query: 61  WVGKIFCRTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYPYAYARWN 117
           WVGKIF RTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYP AYA WN
Sbjct: 365 WVGKIFGRTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYPDAYAGWN 418

[Close]
BLAST of MS008023.1 vs. NCBI nr
Match: ABY66627.1 (cytochrome oxidase subunit I, partial [Echinocystis lobata])

HSP 1 Score: 191.8 bits (486), Expect = 3.3e-45
Identity = 96/116 (82.76%), Postives = 98/116 (84.48%), Query Frame = 0 

Query: 1   MLFTVGSIFLFTIGGLTRIVPANLGIDIALCDTYYVVAHFHYVLPMPFLLYLQDVETNHY 60
           MLF VGSIFLFTIGGLT IVPAN G+DIAL DTYYVVAHFHYVL M  +  L      HY
Sbjct: 305 MLFAVGSIFLFTIGGLTGIVPANSGLDIALHDTYYVVAHFHYVLSMGAVFAL--FAGFHY 364

Query: 61  WVGKIFCRTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYPYAYARWN 117
           WVGKIF RTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYP AYA WN
Sbjct: 365 WVGKIFGRTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYPDAYAGWN 418

[Close]
BLAST of MS008023.1 vs. NCBI nr
Match: YP_009913642.1 (cytochrome c oxidase subunit 1 [Luffa acutangula] >QLM02677.1 cytochrome c oxidase subunit 1 [Luffa acutangula])

HSP 1 Score: 191.8 bits (486), Expect = 3.3e-45
Identity = 96/116 (82.76%), Postives = 98/116 (84.48%), Query Frame = 0 

Query: 1   MLFTVGSIFLFTIGGLTRIVPANLGIDIALCDTYYVVAHFHYVLPMPFLLYLQDVETNHY 60
           MLF VGSIFLFTIGGLT IVPAN G+DIAL DTYYVVAHFHYVL M  +  L      HY
Sbjct: 340 MLFAVGSIFLFTIGGLTGIVPANSGLDIALHDTYYVVAHFHYVLSMGAVFAL--FAGFHY 399

Query: 61  WVGKIFCRTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYPYAYARWN 117
           WVGKIF RTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYP AYA WN
Sbjct: 400 WVGKIFGRTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYPDAYAGWN 453

[Close]
BLAST of MS008023.1 vs. NCBI nr
Match: ABY83868.1 (cytochrome oxidase subunit 1, partial [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 191.8 bits (486), Expect = 3.3e-45
Identity = 96/116 (82.76%), Postives = 98/116 (84.48%), Query Frame = 0 

Query: 1   MLFTVGSIFLFTIGGLTRIVPANLGIDIALCDTYYVVAHFHYVLPMPFLLYLQDVETNHY 60
           MLF VGSIFLFTIGGLT IVPAN G+DIAL DTYYVVAHFHYVL M  +  L      HY
Sbjct: 320 MLFAVGSIFLFTIGGLTGIVPANSGLDIALHDTYYVVAHFHYVLSMGAVFAL--FAGFHY 379

Query: 61  WVGKIFCRTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYPYAYARWN 117
           WVGKIF RTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYP AYA WN
Sbjct: 380 WVGKIFGRTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYPDAYAGWN 433

[Close]
BLAST of MS008023.1 vs. NCBI nr
Match: ABY83874.1 (cytochrome oxidase subunit 1, partial [Neoachmandra indica])

HSP 1 Score: 191.8 bits (486), Expect = 3.3e-45
Identity = 96/116 (82.76%), Postives = 98/116 (84.48%), Query Frame = 0 

Query: 1   MLFTVGSIFLFTIGGLTRIVPANLGIDIALCDTYYVVAHFHYVLPMPFLLYLQDVETNHY 60
           MLF VGSIFLFTIGGLT IVPAN G+DIAL DTYYVVAHFHYVL M  +  L      HY
Sbjct: 338 MLFAVGSIFLFTIGGLTGIVPANSGLDIALHDTYYVVAHFHYVLSMGAVFAL--FAGFHY 397

Query: 61  WVGKIFCRTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYPYAYARWN 117
           WVGKIF RTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYP AYA WN
Sbjct: 398 WVGKIFGRTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYPDAYAGWN 451

[Close]
BLAST of MS008023.1 vs. ExPASy Swiss-Prot
Match: P12786 (Cytochrome c oxidase subunit 1 OS=Pisum sativum OX=3888 GN=COX1 PE=3 SV=2)

HSP 1 Score: 184.1 bits (466), Expect = 8.9e-46
Identity = 93/116 (80.17%), Postives = 96/116 (82.76%), Query Frame = 0 

Query: 1   MLFTVGSIFLFTIGGLTRIVPANLGIDIALCDTYYVVAHFHYVLPMPFLLYLQDVETNHY 60
           MLF VG IFLFTIGGLT IVPAN G+DIAL DTYYVVAHFHYVL M  +  L      HY
Sbjct: 340 MLFAVGFIFLFTIGGLTGIVPANSGLDIALHDTYYVVAHFHYVLSMGAVFAL--FAGFHY 399

Query: 61  WVGKIFCRTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYPYAYARWN 117
           WVGKIF RTYPETLG+IHFWITFFGVN TLFPMHFLGLSGMPRRIPDYP AYA WN
Sbjct: 400 WVGKIFGRTYPETLGKIHFWITFFGVNLTLFPMHFLGLSGMPRRIPDYPDAYAGWN 453

[Close]
BLAST of MS008023.1 vs. ExPASy Swiss-Prot
Match: P07506 (Cytochrome c oxidase subunit 1 OS=Glycine max OX=3847 GN=COX1 PE=3 SV=3)

HSP 1 Score: 181.8 bits (460), Expect = 4.4e-45
Identity = 93/116 (80.17%), Postives = 95/116 (81.90%), Query Frame = 0 

Query: 1   MLFTVGSIFLFTIGGLTRIVPANLGIDIALCDTYYVVAHFHYVLPMPFLLYLQDVETNHY 60
           MLF VG IFLFTIGGLT IV AN G+DIAL DTYYVVAHFHYVL M  +  L      HY
Sbjct: 340 MLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTYYVVAHFHYVLSMGAVFAL--FAGFHY 399

Query: 61  WVGKIFCRTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYPYAYARWN 117
           WVGKIF RTYPETLGQIHFWITFFGVN TLFPMHFLGLSGMPRRIPDYP AYA WN
Sbjct: 400 WVGKIFGRTYPETLGQIHFWITFFGVNLTLFPMHFLGLSGMPRRIPDYPDAYAGWN 453

[Close]
BLAST of MS008023.1 vs. ExPASy Swiss-Prot
Match: P68540 (Cytochrome c oxidase subunit 1 OS=Aegilops columnaris OX=4493 GN=COX1 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 6.4e-44
Identity = 91/116 (78.45%), Postives = 94/116 (81.03%), Query Frame = 0 

Query: 1   MLFTVGSIFLFTIGGLTRIVPANLGIDIALCDTYYVVAHFHYVLPMPFLLYLQDVETNHY 60
           MLF VG IFLFTIGGLT IV AN G+DIAL DTYYVVAHFHYVL M  +  L      +Y
Sbjct: 340 MLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTYYVVAHFHYVLSMGAVFAL--FAGFYY 399

Query: 61  WVGKIFCRTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYPYAYARWN 117
           WVGKIF RTYPETLGQIHFWITFFGVN T FPMHFLGLSGMPRRIPDYP AYA WN
Sbjct: 400 WVGKIFGRTYPETLGQIHFWITFFGVNLTFFPMHFLGLSGMPRRIPDYPDAYAGWN 453

[Close]
BLAST of MS008023.1 vs. ExPASy Swiss-Prot
Match: P60620 (Cytochrome c oxidase subunit 1 OS=Arabidopsis thaliana OX=3702 GN=COX1 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 6.4e-44
Identity = 91/116 (78.45%), Postives = 94/116 (81.03%), Query Frame = 0 

Query: 1   MLFTVGSIFLFTIGGLTRIVPANLGIDIALCDTYYVVAHFHYVLPMPFLLYLQDVETNHY 60
           MLF VG IFLFTIGGLT IV AN G+DIAL DTYYVVAHFHYVL M  +  L      +Y
Sbjct: 340 MLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTYYVVAHFHYVLSMGAVFAL--FAGFYY 399

Query: 61  WVGKIFCRTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYPYAYARWN 117
           WVGKIF RTYPETLGQIHFWITFFGVN T FPMHFLGLSGMPRRIPDYP AYA WN
Sbjct: 400 WVGKIFGRTYPETLGQIHFWITFFGVNLTFFPMHFLGLSGMPRRIPDYPDAYAGWN 453

[Close]
BLAST of MS008023.1 vs. ExPASy Swiss-Prot
Match: P08742 (Cytochrome c oxidase subunit 1 OS=Zea mays OX=4577 GN=COX1 PE=3 SV=2)

HSP 1 Score: 177.9 bits (450), Expect = 6.4e-44
Identity = 91/116 (78.45%), Postives = 94/116 (81.03%), Query Frame = 0 

Query: 1   MLFTVGSIFLFTIGGLTRIVPANLGIDIALCDTYYVVAHFHYVLPMPFLLYLQDVETNHY 60
           MLF VG IFLFTIGGLT IV AN G+DIAL DTYYVVAHFHYVL M  +  L      +Y
Sbjct: 340 MLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTYYVVAHFHYVLSMGAVFAL--FAGFYY 399

Query: 61  WVGKIFCRTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYPYAYARWN 117
           WVGKIF RTYPETLGQIHFWITFFGVN T FPMHFLGLSGMPRRIPDYP AYA WN
Sbjct: 400 WVGKIFGRTYPETLGQIHFWITFFGVNLTFFPMHFLGLSGMPRRIPDYPDAYAGWN 453

[Close]
BLAST of MS008023.1 vs. ExPASy TrEMBL
Match: B4XVS1 (Cytochrome c oxidase subunit 1 (Fragment) OS=Luffa acutangula OX=56866 GN=cox1 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.6e-45
Identity = 96/116 (82.76%), Postives = 98/116 (84.48%), Query Frame = 0 

Query: 1   MLFTVGSIFLFTIGGLTRIVPANLGIDIALCDTYYVVAHFHYVLPMPFLLYLQDVETNHY 60
           MLF VGSIFLFTIGGLT IVPAN G+DIAL DTYYVVAHFHYVL M  +  L      HY
Sbjct: 317 MLFAVGSIFLFTIGGLTGIVPANSGLDIALHDTYYVVAHFHYVLSMGAVFAL--FAGFHY 376

Query: 61  WVGKIFCRTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYPYAYARWN 117
           WVGKIF RTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYP AYA WN
Sbjct: 377 WVGKIFGRTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYPDAYAGWN 430

[Close]
BLAST of MS008023.1 vs. ExPASy TrEMBL
Match: A0A7D6J6S5 (Cytochrome c oxidase subunit 1 OS=Luffa acutangula OX=56866 GN=cox1 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.6e-45
Identity = 96/116 (82.76%), Postives = 98/116 (84.48%), Query Frame = 0 

Query: 1   MLFTVGSIFLFTIGGLTRIVPANLGIDIALCDTYYVVAHFHYVLPMPFLLYLQDVETNHY 60
           MLF VGSIFLFTIGGLT IVPAN G+DIAL DTYYVVAHFHYVL M  +  L      HY
Sbjct: 340 MLFAVGSIFLFTIGGLTGIVPANSGLDIALHDTYYVVAHFHYVLSMGAVFAL--FAGFHY 399

Query: 61  WVGKIFCRTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYPYAYARWN 117
           WVGKIF RTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYP AYA WN
Sbjct: 400 WVGKIFGRTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYPDAYAGWN 453

[Close]
BLAST of MS008023.1 vs. ExPASy TrEMBL
Match: A0A5A7UCF6 (Cytochrome c oxidase subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold48743G00030 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.6e-45
Identity = 96/116 (82.76%), Postives = 98/116 (84.48%), Query Frame = 0 

Query: 1   MLFTVGSIFLFTIGGLTRIVPANLGIDIALCDTYYVVAHFHYVLPMPFLLYLQDVETNHY 60
           MLF VGSIFLFTIGGLT IVPAN G+DIAL DTYYVVAHFHYVL M  +  L      HY
Sbjct: 468 MLFAVGSIFLFTIGGLTGIVPANSGLDIALHDTYYVVAHFHYVLSMGAVFAL--FAGFHY 527

Query: 61  WVGKIFCRTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYPYAYARWN 117
           WVGKIF RTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYP AYA WN
Sbjct: 528 WVGKIFGRTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYPDAYAGWN 581

[Close]
BLAST of MS008023.1 vs. ExPASy TrEMBL
Match: B0FA80 (Cytochrome c oxidase subunit 1 (Fragment) OS=Echinocystis lobata OX=252533 GN=coxI PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.6e-45
Identity = 96/116 (82.76%), Postives = 98/116 (84.48%), Query Frame = 0 

Query: 1   MLFTVGSIFLFTIGGLTRIVPANLGIDIALCDTYYVVAHFHYVLPMPFLLYLQDVETNHY 60
           MLF VGSIFLFTIGGLT IVPAN G+DIAL DTYYVVAHFHYVL M  +  L      HY
Sbjct: 305 MLFAVGSIFLFTIGGLTGIVPANSGLDIALHDTYYVVAHFHYVLSMGAVFAL--FAGFHY 364

Query: 61  WVGKIFCRTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYPYAYARWN 117
           WVGKIF RTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYP AYA WN
Sbjct: 365 WVGKIFGRTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYPDAYAGWN 418

[Close]
BLAST of MS008023.1 vs. ExPASy TrEMBL
Match: G3EU24 (Cytochrome c oxidase subunit 1 OS=Cucumis melo subsp. melo OX=412675 GN=cox1 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.6e-45
Identity = 96/116 (82.76%), Postives = 98/116 (84.48%), Query Frame = 0 

Query: 1   MLFTVGSIFLFTIGGLTRIVPANLGIDIALCDTYYVVAHFHYVLPMPFLLYLQDVETNHY 60
           MLF VGSIFLFTIGGLT IVPAN G+DIAL DTYYVVAHFHYVL M  +  L      HY
Sbjct: 341 MLFAVGSIFLFTIGGLTGIVPANSGLDIALHDTYYVVAHFHYVLSMGAVFAL--FAGFHY 400

Query: 61  WVGKIFCRTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYPYAYARWN 117
           WVGKIF RTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYP AYA WN
Sbjct: 401 WVGKIFGRTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYPDAYAGWN 454

[Close]
BLAST of MS008023.1 vs. TAIR 10
Match: ATMG01360.1 (cytochrome oxidase )

HSP 1 Score: 177.9 bits (450), Expect = 4.5e-45
Identity = 91/116 (78.45%), Postives = 94/116 (81.03%), Query Frame = 0 

Query: 1   MLFTVGSIFLFTIGGLTRIVPANLGIDIALCDTYYVVAHFHYVLPMPFLLYLQDVETNHY 60
           MLF VG IFLFTIGGLT IV AN G+DIAL DTYYVVAHFHYVL M  +  L      +Y
Sbjct: 340 MLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTYYVVAHFHYVLSMGAVFAL--FAGFYY 399

Query: 61  WVGKIFCRTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYPYAYARWN 117
           WVGKIF RTYPETLGQIHFWITFFGVN T FPMHFLGLSGMPRRIPDYP AYA WN
Sbjct: 400 WVGKIFGRTYPETLGQIHFWITFFGVNLTFFPMHFLGLSGMPRRIPDYPDAYAGWN 453

The following BLAST results are available for this feature:
BLAST of MS008023.1 vs. NCBI nr
Match NameE-valueIdentityDescription
AAF77684.13.3e-4582.76cytochrome oxidase subunit 1, partial [Sarcandra grandifolia][more]
ABY66627.13.3e-4582.76cytochrome oxidase subunit I, partial [Echinocystis lobata][more]
YP_009913642.13.3e-4582.76cytochrome c oxidase subunit 1 [Luffa acutangula] >QLM02677.1 cytochrome c oxida... [more]
ABY83868.13.3e-4582.76cytochrome oxidase subunit 1, partial [Citrullus lanatus subsp. vulgaris][more]
ABY83874.13.3e-4582.76cytochrome oxidase subunit 1, partial [Neoachmandra indica][more]
BLAST of MS008023.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P127868.9e-4680.17Cytochrome c oxidase subunit 1 OS=Pisum sativum OX=3888 GN=COX1 PE=3 SV=2[more]
P075064.4e-4580.17Cytochrome c oxidase subunit 1 OS=Glycine max OX=3847 GN=COX1 PE=3 SV=3[more]
P685406.4e-4478.45Cytochrome c oxidase subunit 1 OS=Aegilops columnaris OX=4493 GN=COX1 PE=3 SV=1[more]
P606206.4e-4478.45Cytochrome c oxidase subunit 1 OS=Arabidopsis thaliana OX=3702 GN=COX1 PE=3 SV=1[more]
P087426.4e-4478.45Cytochrome c oxidase subunit 1 OS=Zea mays OX=4577 GN=COX1 PE=3 SV=2[more]
BLAST of MS008023.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
B4XVS11.6e-4582.76Cytochrome c oxidase subunit 1 (Fragment) OS=Luffa acutangula OX=56866 GN=cox1 P... [more]
A0A7D6J6S51.6e-4582.76Cytochrome c oxidase subunit 1 OS=Luffa acutangula OX=56866 GN=cox1 PE=3 SV=1[more]
A0A5A7UCF61.6e-4582.76Cytochrome c oxidase subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
B0FA801.6e-4582.76Cytochrome c oxidase subunit 1 (Fragment) OS=Echinocystis lobata OX=252533 GN=co... [more]
G3EU241.6e-4582.76Cytochrome c oxidase subunit 1 OS=Cucumis melo subsp. melo OX=412675 GN=cox1 PE=... [more]
BLAST of MS008023.1 vs. TAIR 10
Match NameE-valueIdentityDescription
ATMG01360.14.5e-4578.45cytochrome oxidase [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000883Cytochrome c oxidase subunit IPRINTSPR01165CYCOXIDASEIcoord: 3..21
score: 55.34
coord: 83..104
score: 73.79
coord: 31..50
score: 65.06
IPR000883Cytochrome c oxidase subunit IPFAMPF00115COX1coord: 1..111
e-value: 1.1E-26
score: 93.7
IPR000883Cytochrome c oxidase subunit IPANTHERPTHR10422CYTOCHROME C OXIDASE SUBUNIT 1coord: 1..116
IPR036927Cytochrome c oxidase-like, subunit I superfamilyGENE3D1.20.210.10coord: 1..116
e-value: 1.1E-36
score: 128.3
IPR036927Cytochrome c oxidase-like, subunit I superfamilySUPERFAMILY81442Cytochrome c oxidase subunit I-likecoord: 1..116
NoneNo IPR availablePANTHERPTHR10422:SF18CYTOCHROME C OXIDASE SUBUNIT 1coord: 1..116
IPR023616Cytochrome c oxidase-like, subunit I domainPROSITEPS50855COX1coord: 1..116
score: 22.654831

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MS008023MS008023gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MS008023.1-cdsMS008023.1-cds-scaffold284:219646..219855CDS
MS008023.1-cdsMS008023.1-cds-scaffold284:219860..219997CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MS008023.1MS008023.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009060 aerobic respiration
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004129 cytochrome-c oxidase activity
molecular_function GO:0020037 heme binding