MS002987.1 (mRNA) Bitter gourd (TR) v1

Overview
NameMS002987.1
TypemRNA
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionserine/threonine-protein kinase PBS1
Locationscaffold595_1: 798341 .. 798463 (+)
Sequence length123
RNA-Seq ExpressionMS002987.1
SyntenyMS002987.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTGTTTTCCTTGTTTCGATTCGAGGGAGGAGGAGAAGCTGAATCCTGAAAAGGAAAGCGACGATGGCAAGCAAGACCATCCAATGGTTCCACCCAACATTTCCAAGTTTCCTTCCGGT

mRNA sequence

ATGGGTTGTTTTCCTTGTTTCGATTCGAGGGAGGAGGAGAAGCTGAATCCTGAAAAGGAAAGCGACGATGGCAAGCAAGACCATCCAATGGTTCCACCCAACATTTCCAAGTTTCCTTCCGGT

Coding sequence (CDS)

ATGGGTTGTTTTCCTTGTTTCGATTCGAGGGAGGAGGAGAAGCTGAATCCTGAAAAGGAAAGCGACGATGGCAAGCAAGACCATCCAATGGTTCCACCCAACATTTCCAAGTTTCCTTCCGGT

Protein sequence

MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNISKFPSG
Homology
BLAST of MS002987.1 vs. NCBI nr
Match: XP_022148921.1 (serine/threonine-protein kinase PBS1 [Momordica charantia])

HSP 1 Score: 92.4 bits (228), Expect = 9.5e-16
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0

Query: 1  MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNISKFPSG 42
          MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNISKFPSG
Sbjct: 1  MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNISKFPSG 41

BLAST of MS002987.1 vs. NCBI nr
Match: XP_008459890.1 (PREDICTED: serine/threonine-protein kinase PBS1 [Cucumis melo] >KAA0039839.1 serine/threonine-protein kinase PBS1 [Cucumis melo var. makuwa] >TYK24660.1 serine/threonine-protein kinase PBS1 [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 1.1e-14
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0

Query: 1  MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNISKFPSG 42
          MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNI+K PSG
Sbjct: 1  MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNIAKLPSG 41

BLAST of MS002987.1 vs. NCBI nr
Match: XP_038874380.1 (serine/threonine-protein kinase PBS1 [Benincasa hispida])

HSP 1 Score: 89.0 bits (219), Expect = 1.1e-14
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0

Query: 1  MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNISKFPSG 42
          MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNI+K PSG
Sbjct: 1  MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNIAKLPSG 41

BLAST of MS002987.1 vs. NCBI nr
Match: XP_004140546.1 (serine/threonine-protein kinase PBS1 [Cucumis sativus] >KGN46431.1 hypothetical protein Csa_005008 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 1.1e-14
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0

Query: 1  MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNISKFPSG 42
          MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNI+K PSG
Sbjct: 1  MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNIAKLPSG 41

BLAST of MS002987.1 vs. NCBI nr
Match: KAG7014635.1 (Serine/threonine-protein kinase PBS1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 86.3 bits (212), Expect = 6.8e-14
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 0

Query: 1  MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNISKFPSG 42
          MGCFPCFDSREEEKLNPE+ESDDG+QDHPMVPPNI+K PSG
Sbjct: 1  MGCFPCFDSREEEKLNPERESDDGQQDHPMVPPNIAKLPSG 41

BLAST of MS002987.1 vs. ExPASy Swiss-Prot
Match: Q9FE20 (Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana OX=3702 GN=PBS1 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 4.2e-06
Identity = 26/43 (60.47%), Postives = 29/43 (67.44%), Query Frame = 0

Query: 1  MGCFPCFDSREEEKLNPEKESDDG--KQDHPMVPPNISKFPSG 42
          MGCF CFDS ++EKLNP  ES+ G  KQ  P V  NIS  PSG
Sbjct: 1  MGCFSCFDSSDDEKLNPVDESNHGQKKQSQPTVSNNISGLPSG 43

BLAST of MS002987.1 vs. ExPASy TrEMBL
Match: A0A6J1D6T7 (serine/threonine-protein kinase PBS1 OS=Momordica charantia OX=3673 GN=LOC111017471 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.6e-16
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0

Query: 1  MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNISKFPSG 42
          MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNISKFPSG
Sbjct: 1  MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNISKFPSG 41

BLAST of MS002987.1 vs. ExPASy TrEMBL
Match: A0A5D3DN08 (Serine/threonine-protein kinase PBS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002100 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.1e-15
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0

Query: 1  MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNISKFPSG 42
          MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNI+K PSG
Sbjct: 1  MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNIAKLPSG 41

BLAST of MS002987.1 vs. ExPASy TrEMBL
Match: A0A0A0KFA2 (Protein kinase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G092530 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.1e-15
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0

Query: 1  MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNISKFPSG 42
          MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNI+K PSG
Sbjct: 1  MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNIAKLPSG 41

BLAST of MS002987.1 vs. ExPASy TrEMBL
Match: A0A1S3CCG0 (serine/threonine-protein kinase PBS1 OS=Cucumis melo OX=3656 GN=LOC103498873 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.1e-15
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0

Query: 1  MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNISKFPSG 42
          MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNI+K PSG
Sbjct: 1  MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNIAKLPSG 41

BLAST of MS002987.1 vs. ExPASy TrEMBL
Match: A0A6J1JW09 (serine/threonine-protein kinase PBS1-like OS=Cucurbita maxima OX=3661 GN=LOC111488023 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.3e-14
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 0

Query: 1  MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNISKFPSG 42
          MGCFPCFDSREEEKLNPE+ESDDG+QDHPMVPPNI+K PSG
Sbjct: 1  MGCFPCFDSREEEKLNPERESDDGQQDHPMVPPNIAKLPSG 41

BLAST of MS002987.1 vs. TAIR 10
Match: AT5G13160.1 (Protein kinase superfamily protein )

HSP 1 Score: 50.8 bits (120), Expect = 3.0e-07
Identity = 26/43 (60.47%), Postives = 29/43 (67.44%), Query Frame = 0

Query: 1  MGCFPCFDSREEEKLNPEKESDDG--KQDHPMVPPNISKFPSG 42
          MGCF CFDS ++EKLNP  ES+ G  KQ  P V  NIS  PSG
Sbjct: 1  MGCFSCFDSSDDEKLNPVDESNHGQKKQSQPTVSNNISGLPSG 43

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022148921.19.5e-16100.00serine/threonine-protein kinase PBS1 [Momordica charantia][more]
XP_008459890.11.1e-1495.12PREDICTED: serine/threonine-protein kinase PBS1 [Cucumis melo] >KAA0039839.1 ser... [more]
XP_038874380.11.1e-1495.12serine/threonine-protein kinase PBS1 [Benincasa hispida][more]
XP_004140546.11.1e-1495.12serine/threonine-protein kinase PBS1 [Cucumis sativus] >KGN46431.1 hypothetical ... [more]
KAG7014635.16.8e-1490.24Serine/threonine-protein kinase PBS1 [Cucurbita argyrosperma subsp. argyrosperma... [more]
Match NameE-valueIdentityDescription
Q9FE204.2e-0660.47Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana OX=3702 GN=PBS1 PE=... [more]
Match NameE-valueIdentityDescription
A0A6J1D6T74.6e-16100.00serine/threonine-protein kinase PBS1 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A5D3DN085.1e-1595.12Serine/threonine-protein kinase PBS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A0A0KFA25.1e-1595.12Protein kinase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G092... [more]
A0A1S3CCG05.1e-1595.12serine/threonine-protein kinase PBS1 OS=Cucumis melo OX=3656 GN=LOC103498873 PE=... [more]
A0A6J1JW093.3e-1490.24serine/threonine-protein kinase PBS1-like OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
Match NameE-valueIdentityDescription
AT5G13160.13.0e-0760.47Protein kinase superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..27

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MS002987MS002987gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MS002987.1-cdsMS002987.1-cds-scaffold595_1:798341..798463CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MS002987.1MS002987.1-proteinpolypeptide