MS000616.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS000616.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein Ycf2
Location	scaffold93: 431500 .. 431796 (-)
Sequence length	297
RNA-Seq Expression	MS000616.1
Synteny	MS000616.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTACTATNTAGTATTACGCAGAAGAAATCAATTATAGACACTAATATAATTAGATCTGCTCTTCATAGACAAACTTGGGATTTGCGATCCCAGGTAAGATCGGTTCAGGATCATGGGATCCTTTTCTATCAGATAGGAAGGGTTGTTGCACAAAATGTACTTCTAAGTAATTGCTCCATAGATCCTATATCTATCTATATGAAGAAGAAATCATGTAACAAAGGGGGTTCTTATTTGTACAAATGGTGCTTCGAACTTGGAACGAGCATGAAGAAATTAACGATACTTCTTTATCTT

mRNA sequence

TTACTATNTAGTATTACGCAGAAGAAATCAATTATAGACACTAATATAATTAGATCTGCTCTTCATAGACAAACTTGGGATTTGCGATCCCAGGTAAGATCGGTTCAGGATCATGGGATCCTTTTCTATCAGATAGGAAGGGTTGTTGCACAAAATGTACTTCTAAGTAATTGCTCCATAGATCCTATATCTATCTATATGAAGAAGAAATCATGTAACAAAGGGGGTTCTTATTTGTACAAATGGTGCTTCGAACTTGGAACGAGCATGAAGAAATTAACGATACTTCTTTATCTT

Coding sequence (CDS)

TTACTATNTAGTATTACGCAGAAGAAATCAATTATAGACACTAATATAATTAGATCTGCTCTTCATAGACAAACTTGGGATTTGCGATCCCAGGTAAGATCGGTTCAGGATCATGGGATCCTTTTCTATCAGATAGGAAGGGTTGTTGCACAAAATGTACTTCTAAGTAATTGCTCCATAGATCCTATATCTATCTATATGAAGAAGAAATCATGTAACAAAGGGGGTTCTTATTTGTACAAATGGTGCTTCGAACTTGGAACGAGCATGAAGAAATTAACGATACTTCTTTATCTT

Protein sequence

LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL

Homology

[Close]

BLAST of MS000616.1 vs. NCBI nr
Match: QHQ97342.1 (hypothetical protein RF2 [Rosa lucieae] >QHQ97343.1 hypothetical protein RF2 [Rosa lucieae])

HSP 1 Score: 187.2 bits (474), Expect = 6.9e-44
Identity = 94/99 (94.95%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 1    LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSI 60
            L  SITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGR VAQNVLLSNCSI
Sbjct: 1853 LSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSNCSI 1912

Query: 61   DPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL 100
            DPISIYMKKKSCN+GGSYLYKW FELGTSMKKLTILLYL
Sbjct: 1913 DPISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYL 1951

[Close]

BLAST of MS000616.1 vs. NCBI nr
Match: YP_009500533.1 (Ycf2 [Rosa chinensis var. spontanea] >YP_009500550.1 Ycf2 [Rosa chinensis var. spontanea] >AXE43703.1 Ycf2 [Rosa chinensis var. spontanea] >AXE43720.1 Ycf2 [Rosa chinensis var. spontanea])

HSP 1 Score: 187.2 bits (474), Expect = 6.9e-44
Identity = 94/99 (94.95%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 1    LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSI 60
            L  SITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGR VAQNVLLSNCSI
Sbjct: 1853 LSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSNCSI 1912

Query: 61   DPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL 100
            DPISIYMKKKSCN+GGSYLYKW FELGTSMKKLTILLYL
Sbjct: 1913 DPISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYL 1951

[Close]

BLAST of MS000616.1 vs. NCBI nr
Match: YP_009865147.1 (hypothetical protein RF2 [Alchemilla argyrophylla] >YP_009865167.1 hypothetical protein RF2 [Alchemilla argyrophylla] >QKE47218.1 hypothetical protein RF2 [Alchemilla argyrophylla] >QKE47238.1 hypothetical protein RF2 [Alchemilla argyrophylla])

HSP 1 Score: 187.2 bits (474), Expect = 6.9e-44
Identity = 94/99 (94.95%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 1    LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSI 60
            L  SITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGR VAQNVLLSNCSI
Sbjct: 1851 LSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSNCSI 1910

Query: 61   DPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL 100
            DPISIYMKKKSCN+GGSYLYKW FELGTSMKKLTILLYL
Sbjct: 1911 DPISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYL 1949

[Close]

BLAST of MS000616.1 vs. NCBI nr
Match: QIT04093.1 (Ycf2 protein [Luffa aegyptiaca] >QIT04110.1 Ycf2 protein [Luffa aegyptiaca] >QKX48604.1 hypothetical chloroplast RF21 [Luffa aegyptiaca] >QKX48623.1 hypothetical chloroplast RF21 [Luffa aegyptiaca])

HSP 1 Score: 187.2 bits (474), Expect = 6.9e-44
Identity = 94/99 (94.95%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 1    LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSI 60
            L  SITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGR VAQNVLLSNCSI
Sbjct: 1855 LSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSNCSI 1914

Query: 61   DPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL 100
            DPISIYMKKKSCN+GGSYLYKW FELGTSMKKLTILLYL
Sbjct: 1915 DPISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYL 1953

[Close]

BLAST of MS000616.1 vs. NCBI nr
Match: WP_165486117.1 (Ycf2, partial [Candidatus Frankia meridionalis])

HSP 1 Score: 187.2 bits (474), Expect = 6.9e-44
Identity = 94/99 (94.95%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 1    LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSI 60
            L  SITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGR VAQNVLLSNCSI
Sbjct: 955  LSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSNCSI 1014

Query: 61   DPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL 100
            DPISIYMKKKSCN+GGSYLYKW FELGTSMKKLTILLYL
Sbjct: 1015 DPISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYL 1053

[Close]

BLAST of MS000616.1 vs. ExPASy Swiss-Prot
Match: Q09WV7 (Protein Ycf2 OS=Morus indica OX=248361 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.7e-45
Identity = 92/99 (92.93%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 1    LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSI 60
            L  SITQKKSIIDTNIIRSA HRQTWDLRSQVRSVQDHGILFYQIGR VAQNVLLSNCSI
Sbjct: 1858 LSISITQKKSIIDTNIIRSAFHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSNCSI 1917

Query: 61   DPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL 100
            DPISIYMKKKSCN+G SYLYKW FELGTSMKKLTILLYL
Sbjct: 1918 DPISIYMKKKSCNEGDSYLYKWYFELGTSMKKLTILLYL 1956

[Close]

BLAST of MS000616.1 vs. ExPASy Swiss-Prot
Match: Q14F97 (Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 6.5e-45
Identity = 91/99 (91.92%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 1    LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSI 60
            L  SITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGR VAQNV LSNC I
Sbjct: 1855 LSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVFLSNCPI 1914

Query: 61   DPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL 100
            DPISIYMKKKSCN+G SYLYKW FELGTSMKKLTILLYL
Sbjct: 1915 DPISIYMKKKSCNEGDSYLYKWYFELGTSMKKLTILLYL 1953

[Close]

BLAST of MS000616.1 vs. ExPASy Swiss-Prot
Match: A4GYV4 (Protein Ycf2 OS=Populus trichocarpa OX=3694 GN=ycf2-1 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 6.5e-45
Identity = 91/99 (91.92%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 1    LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSI 60
            L  SITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGR VAQNV LSNC I
Sbjct: 1858 LSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVFLSNCPI 1917

Query: 61   DPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL 100
            DPISIYMKKKSCN+G SYLYKW FELGTSMKKLTILLYL
Sbjct: 1918 DPISIYMKKKSCNEGDSYLYKWYFELGTSMKKLTILLYL 1956

[Close]

BLAST of MS000616.1 vs. ExPASy Swiss-Prot
Match: B1A978 (Protein Ycf2 OS=Carica papaya OX=3649 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 8.4e-45
Identity = 91/99 (91.92%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 1    LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSI 60
            L  SITQKKSIIDTN IRSALHRQTWDLRSQVRSVQDHGILFYQIGR VAQNVLLSNC I
Sbjct: 1871 LSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSNCPI 1930

Query: 61   DPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL 100
            DPISIYMKKKSCN+G SYLYKW FELGTSMKKLTILLYL
Sbjct: 1931 DPISIYMKKKSCNEGDSYLYKWYFELGTSMKKLTILLYL 1969

[Close]

BLAST of MS000616.1 vs. ExPASy Swiss-Prot
Match: Q09MB4 (Protein Ycf2 OS=Citrus sinensis OX=2711 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 8.4e-45
Identity = 91/99 (91.92%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 1    LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSI 60
            L  SITQKKSIIDTN IRSALHRQTWDLRSQVRSVQDHGILFYQIGR VAQNVLLSNC I
Sbjct: 1855 LSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSNCPI 1914

Query: 61   DPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL 100
            DPISIYMKKKSCN+G SYLYKW FELGTSMKKLTILLYL
Sbjct: 1915 DPISIYMKKKSCNEGDSYLYKWYFELGTSMKKLTILLYL 1953

[Close]

BLAST of MS000616.1 vs. ExPASy TrEMBL
Match: A0A515BL03 (Protein Ycf2 OS=Potentilla stolonifera var. quelpaertensis OX=2594711 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 3.3e-44
Identity = 94/99 (94.95%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 1    LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSI 60
            L  SITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGR VAQNVLLSNCSI
Sbjct: 1853 LSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSNCSI 1912

Query: 61   DPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL 100
            DPISIYMKKKSCN+GGSYLYKW FELGTSMKKLTILLYL
Sbjct: 1913 DPISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYL 1951

[Close]

BLAST of MS000616.1 vs. ExPASy TrEMBL
Match: A0A7D3UT60 (Protein Ycf2 OS=Alchemilla pedata OX=478332 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 3.3e-44
Identity = 94/99 (94.95%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 1    LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSI 60
            L  SITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGR VAQNVLLSNCSI
Sbjct: 1851 LSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSNCSI 1910

Query: 61   DPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL 100
            DPISIYMKKKSCN+GGSYLYKW FELGTSMKKLTILLYL
Sbjct: 1911 DPISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYL 1949

[Close]

BLAST of MS000616.1 vs. ExPASy TrEMBL
Match: A0A067YP60 (Protein Ycf2 OS=Rosa gigantea OX=74650 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 3.3e-44
Identity = 94/99 (94.95%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 1    LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSI 60
            L  SITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGR VAQNVLLSNCSI
Sbjct: 1853 LSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSNCSI 1912

Query: 61   DPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL 100
            DPISIYMKKKSCN+GGSYLYKW FELGTSMKKLTILLYL
Sbjct: 1913 DPISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYL 1951

[Close]

BLAST of MS000616.1 vs. ExPASy TrEMBL
Match: F1KLG5 (Protein Ycf2 OS=Fragaria vesca subsp. vesca OX=101020 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 3.3e-44
Identity = 94/99 (94.95%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 1    LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSI 60
            L  SITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGR VAQNVLLSNCSI
Sbjct: 1849 LSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSNCSI 1908

Query: 61   DPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL 100
            DPISIYMKKKSCN+GGSYLYKW FELGTSMKKLTILLYL
Sbjct: 1909 DPISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYL 1947

[Close]

BLAST of MS000616.1 vs. ExPASy TrEMBL
Match: A0A7L8XKP9 (Protein Ycf2 OS=Rosa cymosa OX=117261 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 3.3e-44
Identity = 94/99 (94.95%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 1    LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSI 60
            L  SITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGR VAQNVLLSNCSI
Sbjct: 1853 LSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSNCSI 1912

Query: 61   DPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL 100
            DPISIYMKKKSCN+GGSYLYKW FELGTSMKKLTILLYL
Sbjct: 1913 DPISIYMKKKSCNEGGSYLYKWYFELGTSMKKLTILLYL 1951

[Close]

BLAST of MS000616.1 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 178.3 bits (451), Expect = 3.0e-45
Identity = 89/99 (89.90%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1    LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSI 60
            L  SITQKKSIIDTN IRSALHRQTWDLRSQVRSVQDHGILFYQIGR VAQNVL+SNC I
Sbjct: 1867 LSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLISNCPI 1926

Query: 61   DPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL 100
            DPISIYMKKKSCN+G SYLYKW FELGTSMKK TILLYL
Sbjct: 1927 DPISIYMKKKSCNEGDSYLYKWYFELGTSMKKFTILLYL 1965

[Close]

BLAST of MS000616.1 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 178.3 bits (451), Expect = 3.0e-45
Identity = 89/99 (89.90%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1    LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSI 60
            L  SITQKKSIIDTN IRSALHRQTWDLRSQVRSVQDHGILFYQIGR VAQNVL+SNC I
Sbjct: 1867 LSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLISNCPI 1926

Query: 61   DPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL 100
            DPISIYMKKKSCN+G SYLYKW FELGTSMKK TILLYL
Sbjct: 1927 DPISIYMKKKSCNEGDSYLYKWYFELGTSMKKFTILLYL 1965

The following BLAST results are available for this feature:

BLAST of MS000616.1 vs. NCBI nr


Match Name	E-value	Identity	Description
QHQ97342.1	6.9e-44	94.95	hypothetical protein RF2 [Rosa lucieae] >QHQ97343.1 hypothetical protein RF2 [Ro...	[more]
YP_009500533.1	6.9e-44	94.95	Ycf2 [Rosa chinensis var. spontanea] >YP_009500550.1 Ycf2 [Rosa chinensis var. s...	[more]
YP_009865147.1	6.9e-44	94.95	hypothetical protein RF2 [Alchemilla argyrophylla] >YP_009865167.1 hypothetical ...	[more]
QIT04093.1	6.9e-44	94.95	Ycf2 protein [Luffa aegyptiaca] >QIT04110.1 Ycf2 protein [Luffa aegyptiaca] >QKX...	[more]
WP_165486117.1	6.9e-44	94.95	Ycf2, partial [Candidatus Frankia meridionalis]	[more]

BLAST of MS000616.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q09WV7	1.7e-45	92.93	Protein Ycf2 OS=Morus indica OX=248361 GN=ycf2-A PE=3 SV=1	[more]
Q14F97	6.5e-45	91.92	Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1	[more]
A4GYV4	6.5e-45	91.92	Protein Ycf2 OS=Populus trichocarpa OX=3694 GN=ycf2-1 PE=3 SV=1	[more]
B1A978	8.4e-45	91.92	Protein Ycf2 OS=Carica papaya OX=3649 GN=ycf2-A PE=3 SV=1	[more]
Q09MB4	8.4e-45	91.92	Protein Ycf2 OS=Citrus sinensis OX=2711 GN=ycf2-A PE=3 SV=1	[more]

BLAST of MS000616.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A515BL03	3.3e-44	94.95	Protein Ycf2 OS=Potentilla stolonifera var. quelpaertensis OX=2594711 GN=ycf2 PE...	[more]
A0A7D3UT60	3.3e-44	94.95	Protein Ycf2 OS=Alchemilla pedata OX=478332 GN=ycf2 PE=3 SV=1	[more]
A0A067YP60	3.3e-44	94.95	Protein Ycf2 OS=Rosa gigantea OX=74650 GN=ycf2 PE=3 SV=1	[more]
F1KLG5	3.3e-44	94.95	Protein Ycf2 OS=Fragaria vesca subsp. vesca OX=101020 GN=ycf2 PE=3 SV=1	[more]
A0A7L8XKP9	3.3e-44	94.95	Protein Ycf2 OS=Rosa cymosa OX=117261 GN=ycf2 PE=3 SV=1	[more]

BLAST of MS000616.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	3.0e-45	89.90	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	3.0e-45	89.90	Chloroplast Ycf2;ATPase, AAA type, core	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33078:SF43	PROTEIN YCF2	coord: 2..98
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 2..98

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS000616	MS000616	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS000616.1-cds	MS000616.1-cds-scaffold93:431500..431796	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS000616.1	MS000616.1-protein	polypeptide