MS000616 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TTACTATNTAGTATTACGCAGAAGAAATCAATTATAGACACTAATATAATTAGATCTGCTCTTCATAGACAAACTTGGGATTTGCGATCCCAGGTAAGATCGGTTCAGGATCATGGGATCCTTTTCTATCAGATAGGAAGGGTTGTTGCACAAAATGTACTTCTAAGTAATTGCTCCATAGATCCTATATCTATCTATATGAAGAAGAAATCATGTAACAAAGGGGGTTCTTATTTGTACAAATGGTGCTTCGAACTTGGAACGAGCATGAAGAAATTAACGATACTTCTTTATCTT TTACTATNTAGTATTACGCAGAAGAAATCAATTATAGACACTAATATAATTAGATCTGCTCTTCATAGACAAACTTGGGATTTGCGATCCCAGGTAAGATCGGTTCAGGATCATGGGATCCTTTTCTATCAGATAGGAAGGGTTGTTGCACAAAATGTACTTCTAAGTAATTGCTCCATAGATCCTATATCTATCTATATGAAGAAGAAATCATGTAACAAAGGGGGTTCTTATTTGTACAAATGGTGCTTCGAACTTGGAACGAGCATGAAGAAATTAACGATACTTCTTTATCTT TTACTATNTAGTATTACGCAGAAGAAATCAATTATAGACACTAATATAATTAGATCTGCTCTTCATAGACAAACTTGGGATTTGCGATCCCAGGTAAGATCGGTTCAGGATCATGGGATCCTTTTCTATCAGATAGGAAGGGTTGTTGCACAAAATGTACTTCTAAGTAATTGCTCCATAGATCCTATATCTATCTATATGAAGAAGAAATCATGTAACAAAGGGGGTTCTTATTTGTACAAATGGTGCTTCGAACTTGGAACGAGCATGAAGAAATTAACGATACTTCTTTATCTT LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL Homology
BLAST of MS000616 vs. NCBI nr
Match: QHQ97342.1 (hypothetical protein RF2 [Rosa lucieae] >QHQ97343.1 hypothetical protein RF2 [Rosa lucieae]) HSP 1 Score: 187.2 bits (474), Expect = 6.9e-44 Identity = 94/99 (94.95%), Postives = 95/99 (95.96%), Query Frame = 0
BLAST of MS000616 vs. NCBI nr
Match: YP_009500533.1 (Ycf2 [Rosa chinensis var. spontanea] >YP_009500550.1 Ycf2 [Rosa chinensis var. spontanea] >AXE43703.1 Ycf2 [Rosa chinensis var. spontanea] >AXE43720.1 Ycf2 [Rosa chinensis var. spontanea]) HSP 1 Score: 187.2 bits (474), Expect = 6.9e-44 Identity = 94/99 (94.95%), Postives = 95/99 (95.96%), Query Frame = 0
BLAST of MS000616 vs. NCBI nr
Match: YP_009865147.1 (hypothetical protein RF2 [Alchemilla argyrophylla] >YP_009865167.1 hypothetical protein RF2 [Alchemilla argyrophylla] >QKE47218.1 hypothetical protein RF2 [Alchemilla argyrophylla] >QKE47238.1 hypothetical protein RF2 [Alchemilla argyrophylla]) HSP 1 Score: 187.2 bits (474), Expect = 6.9e-44 Identity = 94/99 (94.95%), Postives = 95/99 (95.96%), Query Frame = 0
BLAST of MS000616 vs. NCBI nr
Match: QIT04093.1 (Ycf2 protein [Luffa aegyptiaca] >QIT04110.1 Ycf2 protein [Luffa aegyptiaca] >QKX48604.1 hypothetical chloroplast RF21 [Luffa aegyptiaca] >QKX48623.1 hypothetical chloroplast RF21 [Luffa aegyptiaca]) HSP 1 Score: 187.2 bits (474), Expect = 6.9e-44 Identity = 94/99 (94.95%), Postives = 95/99 (95.96%), Query Frame = 0
BLAST of MS000616 vs. NCBI nr
Match: WP_165486117.1 (Ycf2, partial [Candidatus Frankia meridionalis]) HSP 1 Score: 187.2 bits (474), Expect = 6.9e-44 Identity = 94/99 (94.95%), Postives = 95/99 (95.96%), Query Frame = 0
BLAST of MS000616 vs. ExPASy Swiss-Prot
Match: Q09WV7 (Protein Ycf2 OS=Morus indica OX=248361 GN=ycf2-A PE=3 SV=1) HSP 1 Score: 183.0 bits (463), Expect = 1.7e-45 Identity = 92/99 (92.93%), Postives = 93/99 (93.94%), Query Frame = 0
BLAST of MS000616 vs. ExPASy Swiss-Prot
Match: Q14F97 (Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 6.5e-45 Identity = 91/99 (91.92%), Postives = 92/99 (92.93%), Query Frame = 0
BLAST of MS000616 vs. ExPASy Swiss-Prot
Match: A4GYV4 (Protein Ycf2 OS=Populus trichocarpa OX=3694 GN=ycf2-1 PE=3 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 6.5e-45 Identity = 91/99 (91.92%), Postives = 92/99 (92.93%), Query Frame = 0
BLAST of MS000616 vs. ExPASy Swiss-Prot
Match: B1A978 (Protein Ycf2 OS=Carica papaya OX=3649 GN=ycf2-A PE=3 SV=1) HSP 1 Score: 180.6 bits (457), Expect = 8.4e-45 Identity = 91/99 (91.92%), Postives = 92/99 (92.93%), Query Frame = 0
BLAST of MS000616 vs. ExPASy Swiss-Prot
Match: Q09MB4 (Protein Ycf2 OS=Citrus sinensis OX=2711 GN=ycf2-A PE=3 SV=1) HSP 1 Score: 180.6 bits (457), Expect = 8.4e-45 Identity = 91/99 (91.92%), Postives = 92/99 (92.93%), Query Frame = 0
BLAST of MS000616 vs. ExPASy TrEMBL
Match: A0A515BL03 (Protein Ycf2 OS=Potentilla stolonifera var. quelpaertensis OX=2594711 GN=ycf2 PE=3 SV=1) HSP 1 Score: 187.2 bits (474), Expect = 3.3e-44 Identity = 94/99 (94.95%), Postives = 95/99 (95.96%), Query Frame = 0
BLAST of MS000616 vs. ExPASy TrEMBL
Match: A0A7D3UT60 (Protein Ycf2 OS=Alchemilla pedata OX=478332 GN=ycf2 PE=3 SV=1) HSP 1 Score: 187.2 bits (474), Expect = 3.3e-44 Identity = 94/99 (94.95%), Postives = 95/99 (95.96%), Query Frame = 0
BLAST of MS000616 vs. ExPASy TrEMBL
Match: A0A067YP60 (Protein Ycf2 OS=Rosa gigantea OX=74650 GN=ycf2 PE=3 SV=1) HSP 1 Score: 187.2 bits (474), Expect = 3.3e-44 Identity = 94/99 (94.95%), Postives = 95/99 (95.96%), Query Frame = 0
BLAST of MS000616 vs. ExPASy TrEMBL
Match: F1KLG5 (Protein Ycf2 OS=Fragaria vesca subsp. vesca OX=101020 GN=ycf2 PE=3 SV=1) HSP 1 Score: 187.2 bits (474), Expect = 3.3e-44 Identity = 94/99 (94.95%), Postives = 95/99 (95.96%), Query Frame = 0
BLAST of MS000616 vs. ExPASy TrEMBL
Match: A0A7L8XKP9 (Protein Ycf2 OS=Rosa cymosa OX=117261 GN=ycf2 PE=3 SV=1) HSP 1 Score: 187.2 bits (474), Expect = 3.3e-44 Identity = 94/99 (94.95%), Postives = 95/99 (95.96%), Query Frame = 0
BLAST of MS000616 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core ) HSP 1 Score: 178.3 bits (451), Expect = 3.0e-45 Identity = 89/99 (89.90%), Postives = 91/99 (91.92%), Query Frame = 0
BLAST of MS000616 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core ) HSP 1 Score: 178.3 bits (451), Expect = 3.0e-45 Identity = 89/99 (89.90%), Postives = 91/99 (91.92%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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