MELO3C034287.jh1.t1 (mRNA) Melon (Harukei-3) v1.41

Overview
NameMELO3C034287.jh1.t1
TypemRNA
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionCACTA en-spm transposon protein
Locationchr10: 7426866 .. 7427502 (-)
Sequence length561
RNA-Seq ExpressionMELO3C034287.jh1.t1
SyntenyMELO3C034287.jh1.t1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATTATAATGACAAACCACATAGCCACATATTTATGTAGTTTATATATTTTGATTCTATGTGTTCGTATTTGCTTATTTAATGTTTGTTTTCTATGTCCATAAGCATTATGTCATCGTCATACACATGTCATAAGTTTTTGGAGGCGGACGCTATGTTTCTCGAGTTTGAGGGCGAGTTAGATAACTTTTTGAGAGGGTCGTCGTCCGTGGGCGACAATGCGAGTGAGTACAAGAATTTCTTTCATTTTAACTTATGATTATTTCATGTTTTTTTCTTCTCTAACATTATATTGAGCAGGGTTGTCTTCTCAACAATCTGGGACTCCGACTCCTAGGAGACGTGCGCAGTCTCGACTCTTAGAGTTGAAGCGCCACGTTGCAGTACATGAACACATTTCGATGACGATCGTTCCTGGTGCGGAGAAACCTATTTCCCCACAAGTCATTTGCTTCAGCCAGACGATAGGCGTGTGCGTGCGAAAGACATTTCCCGTCCGCTGCCTGAAGTGTACGAGGAGATTATGAGGTTCATAAAGCTTCAAATGTATGATGTTTTCCTTAACCCTAATTTTGTTTAACTAGGGTGTTTAATTTGGGGCTGACAAGAAGAATAGCAAAATAGAAAGTTTACTTTG

mRNA sequence

AAATTATAATGACAAACCACATAGCCACATATTTATGTAGTTTATATATTTTGATTCTATGTGTTCGTATTTGCTTATTTAATGTTTGTTTTCTATGTCCATAAGCATTATGTCATCGTCATACACATGTCATAAGTTTTTGGAGGCGGACGCTATGTTTCTCGAGTTTGAGGGCGAGTTAGATAACTTTTTGAGAGGGTCGTCGTCCGTGGGCGACAATGCGAGGTTGTCTTCTCAACAATCTGGGACTCCGACTCCTAGGAGACGTGCGCAGTCTCGACTCTTAGAGTTGAAGCGCCACGTTGCAGTACATGAACACATTTCGATGACGATCGTTCCTGGTGCGGAGAAACCTATTTCCCCACAAGTCATTTGCTTCAGCCAGACGATAGGCGTGTGCGTGCGAAAGACATTTCCCGTCCGCTGCCTGAAGTGTACGAGGAGATTATGAGGTTCATAAAGCTTCAAATGTATGATGTTTTCCTTAACCCTAATTTTGTTTAACTAGGGTGTTTAATTTGGGGCTGACAAGAAGAATAGCAAAATAGAAAGTTTACTTTG

Coding sequence (CDS)

ATGTCCATAAGCATTATGTCATCGTCATACACATGTCATAAGTTTTTGGAGGCGGACGCTATGTTTCTCGAGTTTGAGGGCGAGTTAGATAACTTTTTGAGAGGGTCGTCGTCCGTGGGCGACAATGCGAGGTTGTCTTCTCAACAATCTGGGACTCCGACTCCTAGGAGACGTGCGCAGTCTCGACTCTTAGAGTTGAAGCGCCACGTTGCAGTACATGAACACATTTCGATGACGATCGTTCCTGGTGCGGAGAAACCTATTTCCCCACAAGTCATTTGCTTCAGCCAGACGATAGGCGTGTGCGTGCGAAAGACATTTCCCGTCCGCTGCCTGAAGTGTACGAGGAGATTATGA

Protein sequence

MSISIMSSSYTCHKFLEADAMFLEFEGELDNFLRGSSSVGDNARLSSQQSGTPTPRRRAQSRLLELKRHVAVHEHISMTIVPGAEKPISPQVICFSQTIGVCVRKTFPVRCLKCTRRL
Homology
[Close]
BLAST of MELO3C034287.jh1.t1 vs. NCBI nr
Match: KAA0051610.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK30784.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 214 bits (545), Expect = 1.04e-69
Identity = 109/113 (96.46%), Postives = 110/113 (97.35%), Query Frame = 0 

Query: 6   MSSSYTCHKFLEADAMFLEFEGELDNFLRGSSSVGDNARLSSQQSGTPTPRRRAQSRLLE 65
           MSSSYT HKFLEADAMFLEFEGELDNF RGSSSVGDNARLSSQQSGTPTPRRRAQSRLLE
Sbjct: 1   MSSSYTRHKFLEADAMFLEFEGELDNFSRGSSSVGDNARLSSQQSGTPTPRRRAQSRLLE 60

Query: 66  LKRHVAVHEHISMTIVPGAEKPISPQVICFSQTIGVCVRKTFPVRCLKCTRRL 118
           L+RHVAVHEHISMTIVPGAEKPISPQVI FSQTIGVCVRKTFPVRCLKCTRRL
Sbjct: 61  LERHVAVHEHISMTIVPGAEKPISPQVIRFSQTIGVCVRKTFPVRCLKCTRRL 113

[Close]
BLAST of MELO3C034287.jh1.t1 vs. NCBI nr
Match: TYJ99698.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 147 bits (371), Expect = 1.19e-40
Identity = 76/114 (66.67%), Postives = 86/114 (75.44%), Query Frame = 0 

Query: 2   SISIMSSSYTCHKFLEADAMFLEFEGELDNFLRGSSSVGDNARLSSQQSGTPTPRRRAQS 61
           S +++  SY    F+E D MFL+FE +LDN   GSSSVGDN   SS Q  TPTPRRRAQS
Sbjct: 88  SATLVIMSYRRSSFMETDDMFLQFEEDLDNIAGGSSSVGDNTAGSSSQQTTPTPRRRAQS 147

Query: 62  RLLELKRHVAVHEHISMTIVPGAEKPISPQVICFSQTIGVCVRKTFPVRCLKCT 115
           RLLEL+RHVA++  I MTI PGAEKPISP  + FSQ IGVCVRKTFPVRCLK T
Sbjct: 148 RLLELERHVAINGRIPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWT 201

[Close]
BLAST of MELO3C034287.jh1.t1 vs. NCBI nr
Match: KAA0038961.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 148 bits (373), Expect = 5.02e-40
Identity = 79/111 (71.17%), Postives = 89/111 (80.18%), Query Frame = 0 

Query: 4   SIMSSSYTCHKFLEADAMFLEFEGELDNFLRGSSSVGDN-ARLSSQQSGTPTPRRRAQSR 63
           +IMSSSY  + F+E DAMFLEFE +LDN   GSSS+GDN A  SSQQ  TPTPRRRAQSR
Sbjct: 105 TIMSSSYQRNNFMETDAMFLEFENDLDNIAGGSSSLGDNTAGSSSQQPATPTPRRRAQSR 164

Query: 64  LLELKRHVAVHEHISMTIVPGAEKPISPQVICFSQTIGVCVRKTFPVRCLK 113
           LLEL+RHVA++  I MTI  GA+KPISP  + FSQTIGVCVRKTFPV CLK
Sbjct: 165 LLELERHVAINGCIPMTIAHGAKKPISPHTVRFSQTIGVCVRKTFPVCCLK 215

[Close]
BLAST of MELO3C034287.jh1.t1 vs. NCBI nr
Match: KAA0041798.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK27087.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 139 bits (350), Expect = 5.43e-40
Identity = 72/98 (73.47%), Postives = 80/98 (81.63%), Query Frame = 0 

Query: 16  LEADAMFLEFEGELDNFLRGSSSVGDNARLSSQQSGTPTPRRRAQSRLLELKRHVAVHEH 75
           +E D MFL+FE +LDN   GSSSVGDN   SSQQ+ TPTPRRRAQSRLLEL+RHVA++  
Sbjct: 1   METDDMFLQFEEDLDNIAGGSSSVGDNTESSSQQT-TPTPRRRAQSRLLELERHVAINGR 60

Query: 76  ISMTIVPGAEKPISPQVICFSQTIGVCVRKTFPVRCLK 113
           I MTI PGAEKPISP  I FSQ IGVCV+KTFPVRCLK
Sbjct: 61  IPMTIAPGAEKPISPHAIRFSQAIGVCVQKTFPVRCLK 97

[Close]
BLAST of MELO3C034287.jh1.t1 vs. NCBI nr
Match: KAA0040810.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 138 bits (348), Expect = 1.10e-39
Identity = 71/98 (72.45%), Postives = 81/98 (82.65%), Query Frame = 0 

Query: 16  LEADAMFLEFEGELDNFLRGSSSVGDNARLSSQQSGTPTPRRRAQSRLLELKRHVAVHEH 75
           +E D MFL+FE +LDN   GSSSVGDN   SSQQ+ TPTPRRRAQSRLLEL+RHVA++  
Sbjct: 1   METDDMFLQFEEDLDNIAGGSSSVGDNTGSSSQQT-TPTPRRRAQSRLLELERHVAINGR 60

Query: 76  ISMTIVPGAEKPISPQVICFSQTIGVCVRKTFPVRCLK 113
           I MTI PGAEKPISP V+ FSQ IGVC++KTFPVRCLK
Sbjct: 61  IPMTIAPGAEKPISPHVVRFSQAIGVCMQKTFPVRCLK 97

[Close]
BLAST of MELO3C034287.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7U8Y0 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold267G00030 PE=4 SV=1)

HSP 1 Score: 214 bits (545), Expect = 5.03e-70
Identity = 109/113 (96.46%), Postives = 110/113 (97.35%), Query Frame = 0 

Query: 6   MSSSYTCHKFLEADAMFLEFEGELDNFLRGSSSVGDNARLSSQQSGTPTPRRRAQSRLLE 65
           MSSSYT HKFLEADAMFLEFEGELDNF RGSSSVGDNARLSSQQSGTPTPRRRAQSRLLE
Sbjct: 1   MSSSYTRHKFLEADAMFLEFEGELDNFSRGSSSVGDNARLSSQQSGTPTPRRRAQSRLLE 60

Query: 66  LKRHVAVHEHISMTIVPGAEKPISPQVICFSQTIGVCVRKTFPVRCLKCTRRL 118
           L+RHVAVHEHISMTIVPGAEKPISPQVI FSQTIGVCVRKTFPVRCLKCTRRL
Sbjct: 61  LERHVAVHEHISMTIVPGAEKPISPQVIRFSQTIGVCVRKTFPVRCLKCTRRL 113

[Close]
BLAST of MELO3C034287.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5D3BNG3 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00960 PE=4 SV=1)

HSP 1 Score: 147 bits (371), Expect = 5.76e-41
Identity = 76/114 (66.67%), Postives = 86/114 (75.44%), Query Frame = 0 

Query: 2   SISIMSSSYTCHKFLEADAMFLEFEGELDNFLRGSSSVGDNARLSSQQSGTPTPRRRAQS 61
           S +++  SY    F+E D MFL+FE +LDN   GSSSVGDN   SS Q  TPTPRRRAQS
Sbjct: 88  SATLVIMSYRRSSFMETDDMFLQFEEDLDNIAGGSSSVGDNTAGSSSQQTTPTPRRRAQS 147

Query: 62  RLLELKRHVAVHEHISMTIVPGAEKPISPQVICFSQTIGVCVRKTFPVRCLKCT 115
           RLLEL+RHVA++  I MTI PGAEKPISP  + FSQ IGVCVRKTFPVRCLK T
Sbjct: 148 RLLELERHVAINGRIPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWT 201

[Close]
BLAST of MELO3C034287.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7TBG7 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00370 PE=4 SV=1)

HSP 1 Score: 148 bits (373), Expect = 2.43e-40
Identity = 79/111 (71.17%), Postives = 89/111 (80.18%), Query Frame = 0 

Query: 4   SIMSSSYTCHKFLEADAMFLEFEGELDNFLRGSSSVGDN-ARLSSQQSGTPTPRRRAQSR 63
           +IMSSSY  + F+E DAMFLEFE +LDN   GSSS+GDN A  SSQQ  TPTPRRRAQSR
Sbjct: 105 TIMSSSYQRNNFMETDAMFLEFENDLDNIAGGSSSLGDNTAGSSSQQPATPTPRRRAQSR 164

Query: 64  LLELKRHVAVHEHISMTIVPGAEKPISPQVICFSQTIGVCVRKTFPVRCLK 113
           LLEL+RHVA++  I MTI  GA+KPISP  + FSQTIGVCVRKTFPV CLK
Sbjct: 165 LLELERHVAINGCIPMTIAHGAKKPISPHTVRFSQTIGVCVRKTFPVCCLK 215

[Close]
BLAST of MELO3C034287.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5D3DTK3 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00990 PE=4 SV=1)

HSP 1 Score: 139 bits (350), Expect = 2.63e-40
Identity = 72/98 (73.47%), Postives = 80/98 (81.63%), Query Frame = 0 

Query: 16  LEADAMFLEFEGELDNFLRGSSSVGDNARLSSQQSGTPTPRRRAQSRLLELKRHVAVHEH 75
           +E D MFL+FE +LDN   GSSSVGDN   SSQQ+ TPTPRRRAQSRLLEL+RHVA++  
Sbjct: 1   METDDMFLQFEEDLDNIAGGSSSVGDNTESSSQQT-TPTPRRRAQSRLLELERHVAINGR 60

Query: 76  ISMTIVPGAEKPISPQVICFSQTIGVCVRKTFPVRCLK 113
           I MTI PGAEKPISP  I FSQ IGVCV+KTFPVRCLK
Sbjct: 61  IPMTIAPGAEKPISPHAIRFSQAIGVCVQKTFPVRCLK 97

[Close]
BLAST of MELO3C034287.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7TBV3 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold333G00250 PE=4 SV=1)

HSP 1 Score: 138 bits (348), Expect = 5.30e-40
Identity = 71/98 (72.45%), Postives = 81/98 (82.65%), Query Frame = 0 

Query: 16  LEADAMFLEFEGELDNFLRGSSSVGDNARLSSQQSGTPTPRRRAQSRLLELKRHVAVHEH 75
           +E D MFL+FE +LDN   GSSSVGDN   SSQQ+ TPTPRRRAQSRLLEL+RHVA++  
Sbjct: 1   METDDMFLQFEEDLDNIAGGSSSVGDNTGSSSQQT-TPTPRRRAQSRLLELERHVAINGR 60

Query: 76  ISMTIVPGAEKPISPQVICFSQTIGVCVRKTFPVRCLK 113
           I MTI PGAEKPISP V+ FSQ IGVC++KTFPVRCLK
Sbjct: 61  IPMTIAPGAEKPISPHVVRFSQAIGVCMQKTFPVRCLK 97

The following BLAST results are available for this feature:
BLAST of MELO3C034287.jh1.t1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0051610.11.04e-6996.46CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK30784.1 CACTA en-... [more]
TYJ99698.11.19e-4066.67CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0038961.15.02e-4071.17CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0041798.15.43e-4073.47CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK27087.1 CACTA en-... [more]
KAA0040810.11.10e-3972.45CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C034287.jh1.t1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C034287.jh1.t1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U8Y05.03e-7096.46CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3BNG35.76e-4166.67CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7TBG72.43e-4071.17CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3DTK32.63e-4073.47CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7TBV35.30e-4072.45CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
BLAST of MELO3C034287.jh1.t1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..59
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..57

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C034287.jh1MELO3C034287.jh1gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C034287.jh1.t1.exonMELO3C034287.jh1.t1.exonexon
MELO3C034287.jh1.t1.exonMELO3C034287.jh1.t1.exon_2exon


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C034287.jh1.t1.stop_codonMELO3C034287.jh1.t1.stop_codonstop_codon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C034287.jh1.t1.cdsMELO3C034287.jh1.t1.cdsCDS
MELO3C034287.jh1.t1.cdsMELO3C034287.jh1.t1.cds_2CDS


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C034287.jh1.t1.start_codonMELO3C034287.jh1.t1.start_codonstart_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C034287.jh1.t1MELO3C034287.jh1.t1-proteinpolypeptide