MELO3C034287.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C034287.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	CACTA en-spm transposon protein
Location	chr10: 7426866 .. 7427502 (-)
RNA-Seq Expression	MELO3C034287.jh1
Synteny	MELO3C034287.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTATAATGACAAACCACATAGCCACATATTTATGTAGTTTATATATTTTGATTCTATGTGTTCGTATTTGCTTATTTAATGTTTGTTTTCTATGTCCATAAGCATTATGTCATCGTCATACACATGTCATAAGTTTTTGGAGGCGGACGCTATGTTTCTCGAGTTTGAGGGCGAGTTAGATAACTTTTTGAGAGGGTCGTCGTCCGTGGGCGACAATGCGAGTGAGTACAAGAATTTCTTTCATTTTAACTTATGATTATTTCATGTTTTTTTCTTCTCTAACATTATATTGAGCAGGGTTGTCTTCTCAACAATCTGGGACTCCGACTCCTAGGAGACGTGCGCAGTCTCGACTCTTAGAGTTGAAGCGCCACGTTGCAGTACATGAACACATTTCGATGACGATCGTTCCTGGTGCGGAGAAACCTATTTCCCCACAAGTCATTTGCTTCAGCCAGACGATAGGCGTGTGCGTGCGAAAGACATTTCCCGTCCGCTGCCTGAAGTGTACGAGGAGATTATGAGGTTCATAAAGCTTCAAATGTATGATGTTTTCCTTAACCCTAATTTTGTTTAACTAGGGTGTTTAATTTGGGGCTGACAAGAAGAATAGCAAAATAGAAAGTTTACTTTG

mRNA sequence

AAATTATAATGACAAACCACATAGCCACATATTTATGTAGTTTATATATTTTGATTCTATGTGTTCGTATTTGCTTATTTAATGTTTGTTTTCTATGTCCATAAGCATTATGTCATCGTCATACACATGTCATAAGTTTTTGGAGGCGGACGCTATGTTTCTCGAGTTTGAGGGCGAGTTAGATAACTTTTTGAGAGGGTCGTCGTCCGTGGGCGACAATGCGAGGTTGTCTTCTCAACAATCTGGGACTCCGACTCCTAGGAGACGTGCGCAGTCTCGACTCTTAGAGTTGAAGCGCCACGTTGCAGTACATGAACACATTTCGATGACGATCGTTCCTGGTGCGGAGAAACCTATTTCCCCACAAGTCATTTGCTTCAGCCAGACGATAGGCGTGTGCGTGCGAAAGACATTTCCCGTCCGCTGCCTGAAGTGTACGAGGAGATTATGAGGTTCATAAAGCTTCAAATGTATGATGTTTTCCTTAACCCTAATTTTGTTTAACTAGGGTGTTTAATTTGGGGCTGACAAGAAGAATAGCAAAATAGAAAGTTTACTTTG

Coding sequence (CDS)

ATGTCCATAAGCATTATGTCATCGTCATACACATGTCATAAGTTTTTGGAGGCGGACGCTATGTTTCTCGAGTTTGAGGGCGAGTTAGATAACTTTTTGAGAGGGTCGTCGTCCGTGGGCGACAATGCGAGGTTGTCTTCTCAACAATCTGGGACTCCGACTCCTAGGAGACGTGCGCAGTCTCGACTCTTAGAGTTGAAGCGCCACGTTGCAGTACATGAACACATTTCGATGACGATCGTTCCTGGTGCGGAGAAACCTATTTCCCCACAAGTCATTTGCTTCAGCCAGACGATAGGCGTGTGCGTGCGAAAGACATTTCCCGTCCGCTGCCTGAAGTGTACGAGGAGATTATGA

Protein sequence

MSISIMSSSYTCHKFLEADAMFLEFEGELDNFLRGSSSVGDNARLSSQQSGTPTPRRRAQSRLLELKRHVAVHEHISMTIVPGAEKPISPQVICFSQTIGVCVRKTFPVRCLKCTRRL

Homology

[Close]

BLAST of MELO3C034287.jh1 vs. NCBI nr
Match: KAA0051610.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK30784.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 214 bits (545), Expect = 1.04e-69
Identity = 109/113 (96.46%), Postives = 110/113 (97.35%), Query Frame = 0


Query: 6   MSSSYTCHKFLEADAMFLEFEGELDNFLRGSSSVGDNARLSSQQSGTPTPRRRAQSRLLE 65
           MSSSYT HKFLEADAMFLEFEGELDNF RGSSSVGDNARLSSQQSGTPTPRRRAQSRLLE
Sbjct: 1   MSSSYTRHKFLEADAMFLEFEGELDNFSRGSSSVGDNARLSSQQSGTPTPRRRAQSRLLE 60

Query: 66  LKRHVAVHEHISMTIVPGAEKPISPQVICFSQTIGVCVRKTFPVRCLKCTRRL 118
           L+RHVAVHEHISMTIVPGAEKPISPQVI FSQTIGVCVRKTFPVRCLKCTRRL
Sbjct: 61  LERHVAVHEHISMTIVPGAEKPISPQVIRFSQTIGVCVRKTFPVRCLKCTRRL 113

[Close]

BLAST of MELO3C034287.jh1 vs. NCBI nr
Match: TYJ99698.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 147 bits (371), Expect = 1.19e-40
Identity = 76/114 (66.67%), Postives = 86/114 (75.44%), Query Frame = 0


Query: 2   SISIMSSSYTCHKFLEADAMFLEFEGELDNFLRGSSSVGDNARLSSQQSGTPTPRRRAQS 61
           S +++  SY    F+E D MFL+FE +LDN   GSSSVGDN   SS Q  TPTPRRRAQS
Sbjct: 88  SATLVIMSYRRSSFMETDDMFLQFEEDLDNIAGGSSSVGDNTAGSSSQQTTPTPRRRAQS 147

Query: 62  RLLELKRHVAVHEHISMTIVPGAEKPISPQVICFSQTIGVCVRKTFPVRCLKCT 115
           RLLEL+RHVA++  I MTI PGAEKPISP  + FSQ IGVCVRKTFPVRCLK T
Sbjct: 148 RLLELERHVAINGRIPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWT 201

[Close]

BLAST of MELO3C034287.jh1 vs. NCBI nr
Match: KAA0038961.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 148 bits (373), Expect = 5.02e-40
Identity = 79/111 (71.17%), Postives = 89/111 (80.18%), Query Frame = 0


Query: 4   SIMSSSYTCHKFLEADAMFLEFEGELDNFLRGSSSVGDN-ARLSSQQSGTPTPRRRAQSR 63
           +IMSSSY  + F+E DAMFLEFE +LDN   GSSS+GDN A  SSQQ  TPTPRRRAQSR
Sbjct: 105 TIMSSSYQRNNFMETDAMFLEFENDLDNIAGGSSSLGDNTAGSSSQQPATPTPRRRAQSR 164

Query: 64  LLELKRHVAVHEHISMTIVPGAEKPISPQVICFSQTIGVCVRKTFPVRCLK 113
           LLEL+RHVA++  I MTI  GA+KPISP  + FSQTIGVCVRKTFPV CLK
Sbjct: 165 LLELERHVAINGCIPMTIAHGAKKPISPHTVRFSQTIGVCVRKTFPVCCLK 215

[Close]

BLAST of MELO3C034287.jh1 vs. NCBI nr
Match: KAA0041798.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK27087.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 139 bits (350), Expect = 5.43e-40
Identity = 72/98 (73.47%), Postives = 80/98 (81.63%), Query Frame = 0


Query: 16  LEADAMFLEFEGELDNFLRGSSSVGDNARLSSQQSGTPTPRRRAQSRLLELKRHVAVHEH 75
           +E D MFL+FE +LDN   GSSSVGDN   SSQQ+ TPTPRRRAQSRLLEL+RHVA++  
Sbjct: 1   METDDMFLQFEEDLDNIAGGSSSVGDNTESSSQQT-TPTPRRRAQSRLLELERHVAINGR 60

Query: 76  ISMTIVPGAEKPISPQVICFSQTIGVCVRKTFPVRCLK 113
           I MTI PGAEKPISP  I FSQ IGVCV+KTFPVRCLK
Sbjct: 61  IPMTIAPGAEKPISPHAIRFSQAIGVCVQKTFPVRCLK 97

[Close]

BLAST of MELO3C034287.jh1 vs. NCBI nr
Match: KAA0040810.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 138 bits (348), Expect = 1.10e-39
Identity = 71/98 (72.45%), Postives = 81/98 (82.65%), Query Frame = 0


Query: 16  LEADAMFLEFEGELDNFLRGSSSVGDNARLSSQQSGTPTPRRRAQSRLLELKRHVAVHEH 75
           +E D MFL+FE +LDN   GSSSVGDN   SSQQ+ TPTPRRRAQSRLLEL+RHVA++  
Sbjct: 1   METDDMFLQFEEDLDNIAGGSSSVGDNTGSSSQQT-TPTPRRRAQSRLLELERHVAINGR 60

Query: 76  ISMTIVPGAEKPISPQVICFSQTIGVCVRKTFPVRCLK 113
           I MTI PGAEKPISP V+ FSQ IGVC++KTFPVRCLK
Sbjct: 61  IPMTIAPGAEKPISPHVVRFSQAIGVCMQKTFPVRCLK 97

[Close]

BLAST of MELO3C034287.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U8Y0 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold267G00030 PE=4 SV=1)

HSP 1 Score: 214 bits (545), Expect = 5.03e-70
Identity = 109/113 (96.46%), Postives = 110/113 (97.35%), Query Frame = 0


Query: 6   MSSSYTCHKFLEADAMFLEFEGELDNFLRGSSSVGDNARLSSQQSGTPTPRRRAQSRLLE 65
           MSSSYT HKFLEADAMFLEFEGELDNF RGSSSVGDNARLSSQQSGTPTPRRRAQSRLLE
Sbjct: 1   MSSSYTRHKFLEADAMFLEFEGELDNFSRGSSSVGDNARLSSQQSGTPTPRRRAQSRLLE 60

Query: 66  LKRHVAVHEHISMTIVPGAEKPISPQVICFSQTIGVCVRKTFPVRCLKCTRRL 118
           L+RHVAVHEHISMTIVPGAEKPISPQVI FSQTIGVCVRKTFPVRCLKCTRRL
Sbjct: 61  LERHVAVHEHISMTIVPGAEKPISPQVIRFSQTIGVCVRKTFPVRCLKCTRRL 113

[Close]

BLAST of MELO3C034287.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BNG3 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00960 PE=4 SV=1)

HSP 1 Score: 147 bits (371), Expect = 5.76e-41
Identity = 76/114 (66.67%), Postives = 86/114 (75.44%), Query Frame = 0


Query: 2   SISIMSSSYTCHKFLEADAMFLEFEGELDNFLRGSSSVGDNARLSSQQSGTPTPRRRAQS 61
           S +++  SY    F+E D MFL+FE +LDN   GSSSVGDN   SS Q  TPTPRRRAQS
Sbjct: 88  SATLVIMSYRRSSFMETDDMFLQFEEDLDNIAGGSSSVGDNTAGSSSQQTTPTPRRRAQS 147

Query: 62  RLLELKRHVAVHEHISMTIVPGAEKPISPQVICFSQTIGVCVRKTFPVRCLKCT 115
           RLLEL+RHVA++  I MTI PGAEKPISP  + FSQ IGVCVRKTFPVRCLK T
Sbjct: 148 RLLELERHVAINGRIPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWT 201

[Close]

BLAST of MELO3C034287.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TBG7 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00370 PE=4 SV=1)

HSP 1 Score: 148 bits (373), Expect = 2.43e-40
Identity = 79/111 (71.17%), Postives = 89/111 (80.18%), Query Frame = 0


Query: 4   SIMSSSYTCHKFLEADAMFLEFEGELDNFLRGSSSVGDN-ARLSSQQSGTPTPRRRAQSR 63
           +IMSSSY  + F+E DAMFLEFE +LDN   GSSS+GDN A  SSQQ  TPTPRRRAQSR
Sbjct: 105 TIMSSSYQRNNFMETDAMFLEFENDLDNIAGGSSSLGDNTAGSSSQQPATPTPRRRAQSR 164

Query: 64  LLELKRHVAVHEHISMTIVPGAEKPISPQVICFSQTIGVCVRKTFPVRCLK 113
           LLEL+RHVA++  I MTI  GA+KPISP  + FSQTIGVCVRKTFPV CLK
Sbjct: 165 LLELERHVAINGCIPMTIAHGAKKPISPHTVRFSQTIGVCVRKTFPVCCLK 215

[Close]

BLAST of MELO3C034287.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DTK3 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00990 PE=4 SV=1)

HSP 1 Score: 139 bits (350), Expect = 2.63e-40
Identity = 72/98 (73.47%), Postives = 80/98 (81.63%), Query Frame = 0


Query: 16  LEADAMFLEFEGELDNFLRGSSSVGDNARLSSQQSGTPTPRRRAQSRLLELKRHVAVHEH 75
           +E D MFL+FE +LDN   GSSSVGDN   SSQQ+ TPTPRRRAQSRLLEL+RHVA++  
Sbjct: 1   METDDMFLQFEEDLDNIAGGSSSVGDNTESSSQQT-TPTPRRRAQSRLLELERHVAINGR 60

Query: 76  ISMTIVPGAEKPISPQVICFSQTIGVCVRKTFPVRCLK 113
           I MTI PGAEKPISP  I FSQ IGVCV+KTFPVRCLK
Sbjct: 61  IPMTIAPGAEKPISPHAIRFSQAIGVCVQKTFPVRCLK 97

[Close]

BLAST of MELO3C034287.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TBV3 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold333G00250 PE=4 SV=1)

HSP 1 Score: 138 bits (348), Expect = 5.30e-40
Identity = 71/98 (72.45%), Postives = 81/98 (82.65%), Query Frame = 0


Query: 16  LEADAMFLEFEGELDNFLRGSSSVGDNARLSSQQSGTPTPRRRAQSRLLELKRHVAVHEH 75
           +E D MFL+FE +LDN   GSSSVGDN   SSQQ+ TPTPRRRAQSRLLEL+RHVA++  
Sbjct: 1   METDDMFLQFEEDLDNIAGGSSSVGDNTGSSSQQT-TPTPRRRAQSRLLELERHVAINGR 60

Query: 76  ISMTIVPGAEKPISPQVICFSQTIGVCVRKTFPVRCLK 113
           I MTI PGAEKPISP V+ FSQ IGVC++KTFPVRCLK
Sbjct: 61  IPMTIAPGAEKPISPHVVRFSQAIGVCMQKTFPVRCLK 97

The following BLAST results are available for this feature:

BLAST of MELO3C034287.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051610.1	1.04e-69	96.46	CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK30784.1 CACTA en-...	[more]
TYJ99698.1	1.19e-40	66.67	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0038961.1	5.02e-40	71.17	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0041798.1	5.43e-40	73.47	CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK27087.1 CACTA en-...	[more]
KAA0040810.1	1.10e-39	72.45	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C034287.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C034287.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U8Y0	5.03e-70	96.46	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3BNG3	5.76e-41	66.67	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7TBG7	2.43e-40	71.17	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3DTK3	2.63e-40	73.47	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7TBV3	5.30e-40	72.45	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of MELO3C034287.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034287.jh1.t1	MELO3C034287.jh1.t1	mRNA