MELO3C033303.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C033303.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Auxin response factor
Location	chr08: 17411767 .. 17412619 (+)
Sequence length	414
RNA-Seq Expression	MELO3C033303.1
Synteny	MELO3C033303.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTCTTAGCTTTTTCCCTCTCTCTTTCTTTCTTTTGTGGCTTGTCCTTTGATTGATCGGTAGATGGGGTAGCAGTAGCACGATAGTTTACCATTCTTTCAGACTGTGAAAAACATAGCAAGAGAGAGAGAGAGAGAGAGAAGAGAGACCCTATTTTCTCCTCTTCTTCTTTGGTTTCTCTTGTTGTTCTTCAATCTTTGGCATTTTAGACTGAGACCCATTTTTTCAATTTGGATGACACTTTACGAAGAGAATCCAAGGGAGTCTCACGAAGGTGAAACCCAGTTGAATATCTCTATTTTTTTCAAATTTGGTGTTTATCAAAACACCCAAAGGACTTTGAAATTTCGAGGTGTTTTTGGAGTGTTTGATTGATTTTGTTTGGTGGGTAGGTTTGGAAGGTGAGGATCTGTATGAGGAGCTGTGTAAGGCATGTGCAGGACCTCTTGTTGAAGTTTCTATCGATGGAGAAAGGGTTTTTTACTTCCCGCAGGGTCATATGGAATAAGTATTTTGCCATCTCTTTTTCAATTTCACCCTTGAAACAAAAAGCCCTCATAATCTTAGAGGCTGAAATTTCTTCTGCTTTTTGGTTCTTCATCAATTGGAAGAGTCCACAAATCAGGAGCTTATTCACCAAATCCCTCACTTTGATCTCCCTCCCAAGATCCTATATCATGTTGTTAACATTTGTTTGCTGGTATTTCTTATTTTCTCTTTTGTTCATGTACACTCGCCTACTTTGTTTCTGTTGATTCTTCAGGTTCGTTTTCTTCTTTTGATTTCAATTTTTCAGGCTGAAAAGGAAATGGATGAAGTCTATGCTCAAATCACTTTATACCCAGAGGCTGAT

mRNA sequence

TTTTCTTAGCTTTTTCCCTCTCTCTTTCTTTCTTTTGTGGCTTGTCCTTTGATTGATCGGTAGATGGGGTAGCAGTAGCACGATAGTTTACCATTCTTTCAGACTGTGAAAAACATAGCAAGAGAGAGAGAGAGAGAGAGAAGAGAGACCCTATTTTCTCCTCTTCTTCTTTGGTTTCTCTTGTTGTTCTTCAATCTTTGGCATTTTAGACTGAGACCCATTTTTTCAATTTGGATGACACTTTACGAAGAGAATCCAAGGGAGTCTCACGAAGGTTTGGAAGGTGAGGATCTGTATGAGGAGCTGTGTAAGGCATGTGCAGGACCTCTTGTTGAAGTTTCTATCGATGGAGAAAGGGCTGAAAAGGAAATGGATGAAGTCTATGCTCAAATCACTTTATACCCAGAGGCTGAT

Coding sequence (CDS)

ATGACACTTTACGAAGAGAATCCAAGGGAGTCTCACGAAGGTTTGGAAGGTGAGGATCTGTATGAGGAGCTGTGTAAGGCATGTGCAGGACCTCTTGTTGAAGTTTCTATCGATGGAGAAAGGGCTGAAAAGGAAATGGATGAAGTCTATGCTCAAATCACTTTATACCCAGAGGCTGAT

Protein sequence

MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGERAEKEMDEVYAQITLYPEAD

Homology

[Close]

BLAST of MELO3C033303.1 vs. NCBI nr
Match: KAA0067844.1 (auxin response factor 11-like [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 2.5e-20
Identity = 60/96 (62.50%), Postives = 60/96 (62.50%), Query Frame = 0


Query: 1  MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGER------------------- 60
          MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGER                   
Sbjct: 1  MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGERVFYFPQESTNQELIHQIPH 60

[Close]

BLAST of MELO3C033303.1 vs. NCBI nr
Match: KAA0059740.1 (auxin response factor 11-like [Cucumis melo var. makuwa])

HSP 1 Score: 105.1 bits (261), Expect = 2.1e-19
Identity = 52/60 (86.67%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1  MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGERAEKEMDEVYAQITLYPEAD 60
          MTLYEEN  ES +GLEGEDLYEEL KACAGPLVEV IDGERA+KE DEVYAQITLYPEAD
Sbjct: 1  MTLYEENLGESRKGLEGEDLYEELWKACAGPLVEVPIDGERAKKETDEVYAQITLYPEAD 60

[Close]

BLAST of MELO3C033303.1 vs. NCBI nr
Match: TYK09454.1 (auxin response factor 18 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 2.7e-19
Identity = 51/60 (85.00%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1  MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGERAEKEMDEVYAQITLYPEAD 60
          MTLYEEN  ES +GLEGEDLYEEL KACAGPLVEV +DGERA+KE DEVYAQITLYPEAD
Sbjct: 1  MTLYEENLGESRKGLEGEDLYEELWKACAGPLVEVPVDGERAKKETDEVYAQITLYPEAD 60

[Close]

BLAST of MELO3C033303.1 vs. NCBI nr
Match: KAA0050656.1 (auxin response factor 18 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.2e-14
Identity = 53/103 (51.46%), Postives = 55/103 (53.40%), Query Frame = 0


Query: 1   MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGER------------------- 60
           MTLYEENP ES +GLEGEDLYEEL KACAGPLVEV +DGER                   
Sbjct: 1   MTLYEENPGESRKGLEGEDLYEELWKACAGPLVEVPVDGERVFYFPQGHMEQLEESTNQE 60

[Close]

BLAST of MELO3C033303.1 vs. NCBI nr
Match: XP_011659155.1 (auxin response factor 18 isoform X2 [Cucumis sativus] >KAE8646219.1 hypothetical protein Csa_016342 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 1.2e-14
Identity = 53/103 (51.46%), Postives = 55/103 (53.40%), Query Frame = 0


Query: 1   MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGER------------------- 60
           MTLYEENP ES +GLEGEDLYEEL KACAGPLVEV +DGER                   
Sbjct: 1   MTLYEENPGESRKGLEGEDLYEELWKACAGPLVEVPVDGERVFYFPQGHMEQLEESTNQE 60

[Close]

BLAST of MELO3C033303.1 vs. ExPASy Swiss-Prot
Match: Q9ZPY6 (Auxin response factor 11 OS=Arabidopsis thaliana OX=3702 GN=ARF11 PE=2 SV=3)

HSP 1 Score: 43.9 bits (102), Expect = 7.5e-04
Identity = 33/91 (36.26%), Postives = 35/91 (38.46%), Query Frame = 0


Query: 14  GLEGEDLYEELCKACAGPLVEVSIDGER-------------------------------- 61
           G   ++LY EL KACAGPLVEV   GER                                
Sbjct: 33  GSNDDELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFNLPP 92

[Close]

BLAST of MELO3C033303.1 vs. ExPASy TrEMBL
Match: A0A5A7VKA5 (Auxin response factor 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00520 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.2e-20
Identity = 60/96 (62.50%), Postives = 60/96 (62.50%), Query Frame = 0


Query: 1  MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGER------------------- 60
          MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGER                   
Sbjct: 1  MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGERVFYFPQESTNQELIHQIPH 60

[Close]

BLAST of MELO3C033303.1 vs. ExPASy TrEMBL
Match: A0A5A7UX74 (Auxin response factor 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold551G00190 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-19
Identity = 52/60 (86.67%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1  MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGERAEKEMDEVYAQITLYPEAD 60
          MTLYEEN  ES +GLEGEDLYEEL KACAGPLVEV IDGERA+KE DEVYAQITLYPEAD
Sbjct: 1  MTLYEENLGESRKGLEGEDLYEELWKACAGPLVEVPIDGERAKKETDEVYAQITLYPEAD 60

[Close]

BLAST of MELO3C033303.1 vs. ExPASy TrEMBL
Match: A0A5D3CE34 (Auxin response factor 18 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G00430 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.3e-19
Identity = 51/60 (85.00%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1  MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGERAEKEMDEVYAQITLYPEAD 60
          MTLYEEN  ES +GLEGEDLYEEL KACAGPLVEV +DGERA+KE DEVYAQITLYPEAD
Sbjct: 1  MTLYEENLGESRKGLEGEDLYEELWKACAGPLVEVPVDGERAKKETDEVYAQITLYPEAD 60

[Close]

BLAST of MELO3C033303.1 vs. ExPASy TrEMBL
Match: A0A5D3C9C4 (Auxin response factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G00590 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.7e-15
Identity = 53/103 (51.46%), Postives = 55/103 (53.40%), Query Frame = 0


Query: 1   MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGER------------------- 60
           MTLYEENP ES +GLEGEDLYEEL KACAGPLVEV +DGER                   
Sbjct: 1   MTLYEENPGESRKGLEGEDLYEELWKACAGPLVEVPVDGERVFYFPQGHMEQLEESTNQE 60

[Close]

BLAST of MELO3C033303.1 vs. ExPASy TrEMBL
Match: A0A5A7U902 (Auxin response factor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G001330 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.7e-15
Identity = 53/103 (51.46%), Postives = 55/103 (53.40%), Query Frame = 0


Query: 1   MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGER------------------- 60
           MTLYEENP ES +GLEGEDLYEEL KACAGPLVEV +DGER                   
Sbjct: 1   MTLYEENPGESRKGLEGEDLYEELWKACAGPLVEVPVDGERVFYFPQGHMEQLEESTNQE 60

[Close]

BLAST of MELO3C033303.1 vs. TAIR 10
Match: AT2G46530.1 (auxin response factor 11 )

HSP 1 Score: 43.9 bits (102), Expect = 5.3e-05
Identity = 33/91 (36.26%), Postives = 35/91 (38.46%), Query Frame = 0


Query: 14  GLEGEDLYEELCKACAGPLVEVSIDGER-------------------------------- 61
           G   ++LY EL KACAGPLVEV   GER                                
Sbjct: 12  GSNDDELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFNLPP 71

[Close]

BLAST of MELO3C033303.1 vs. TAIR 10
Match: AT2G46530.3 (auxin response factor 11 )

HSP 1 Score: 43.9 bits (102), Expect = 5.3e-05
Identity = 33/91 (36.26%), Postives = 35/91 (38.46%), Query Frame = 0


Query: 14  GLEGEDLYEELCKACAGPLVEVSIDGER-------------------------------- 61
           G   ++LY EL KACAGPLVEV   GER                                
Sbjct: 33  GSNDDELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFNLPP 92

The following BLAST results are available for this feature:

BLAST of MELO3C033303.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067844.1	2.5e-20	62.50	auxin response factor 11-like [Cucumis melo var. makuwa]	[more]
KAA0059740.1	2.1e-19	86.67	auxin response factor 11-like [Cucumis melo var. makuwa]	[more]
TYK09454.1	2.7e-19	85.00	auxin response factor 18 isoform X2 [Cucumis melo var. makuwa]	[more]
KAA0050656.1	1.2e-14	51.46	auxin response factor 18 isoform X2 [Cucumis melo var. makuwa]	[more]
XP_011659155.1	1.2e-14	51.46	auxin response factor 18 isoform X2 [Cucumis sativus] >KAE8646219.1 hypothetical...	[more]

BLAST of MELO3C033303.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZPY6	7.5e-04	36.26	Auxin response factor 11 OS=Arabidopsis thaliana OX=3702 GN=ARF11 PE=2 SV=3	[more]

BLAST of MELO3C033303.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VKA5	1.2e-20	62.50	Auxin response factor 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7UX74	1.0e-19	86.67	Auxin response factor 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3CE34	1.3e-19	85.00	Auxin response factor 18 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5D3C9C4	5.7e-15	51.46	Auxin response factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold17...	[more]
A0A5A7U902	5.7e-15	51.46	Auxin response factor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67...	[more]

BLAST of MELO3C033303.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46530.1	5.3e-05	36.26	auxin response factor 11	[more]
AT2G46530.3	5.3e-05	36.26	auxin response factor 11	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C033303	MELO3C033303	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C033303.1:exon:239520	MELO3C033303.1:exon:239520	exon
MELO3C033303.1:exon:239521	MELO3C033303.1:exon:239521	exon
MELO3C033303.1:exon:239522	MELO3C033303.1:exon:239522	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C033303.1:five_prime_utr	MELO3C033303.1:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C033303.1:cds	MELO3C033303.1:cds	CDS
MELO3C033303.1:cds	MELO3C033303.1:cds_2	CDS
MELO3C033303.1:cds	MELO3C033303.1:cds_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C033303.1	MELO3C033303.1-protein	polypeptide