MELO3C033303 (gene) Melon (DHL92) v4

Overview
NameMELO3C033303
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionAuxin response factor
Locationchr08: 17411767 .. 17412619 (+)
RNA-Seq ExpressionMELO3C033303
SyntenyMELO3C033303
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTCTTAGCTTTTTCCCTCTCTCTTTCTTTCTTTTGTGGCTTGTCCTTTGATTGATCGGTAGATGGGGTAGCAGTAGCACGATAGTTTACCATTCTTTCAGACTGTGAAAAACATAGCAAGAGAGAGAGAGAGAGAGAGAAGAGAGACCCTATTTTCTCCTCTTCTTCTTTGGTTTCTCTTGTTGTTCTTCAATCTTTGGCATTTTAGACTGAGACCCATTTTTTCAATTTGGATGACACTTTACGAAGAGAATCCAAGGGAGTCTCACGAAGGTGAAACCCAGTTGAATATCTCTATTTTTTTCAAATTTGGTGTTTATCAAAACACCCAAAGGACTTTGAAATTTCGAGGTGTTTTTGGAGTGTTTGATTGATTTTGTTTGGTGGGTAGGTTTGGAAGGTGAGGATCTGTATGAGGAGCTGTGTAAGGCATGTGCAGGACCTCTTGTTGAAGTTTCTATCGATGGAGAAAGGGTTTTTTACTTCCCGCAGGGTCATATGGAATAAGTATTTTGCCATCTCTTTTTCAATTTCACCCTTGAAACAAAAAGCCCTCATAATCTTAGAGGCTGAAATTTCTTCTGCTTTTTGGTTCTTCATCAATTGGAAGAGTCCACAAATCAGGAGCTTATTCACCAAATCCCTCACTTTGATCTCCCTCCCAAGATCCTATATCATGTTGTTAACATTTGTTTGCTGGTATTTCTTATTTTCTCTTTTGTTCATGTACACTCGCCTACTTTGTTTCTGTTGATTCTTCAGGTTCGTTTTCTTCTTTTGATTTCAATTTTTCAGGCTGAAAAGGAAATGGATGAAGTCTATGCTCAAATCACTTTATACCCAGAGGCTGAT

mRNA sequence

TTTTCTTAGCTTTTTCCCTCTCTCTTTCTTTCTTTTGTGGCTTGTCCTTTGATTGATCGGTAGATGGGGTAGCAGTAGCACGATAGTTTACCATTCTTTCAGACTGTGAAAAACATAGCAAGAGAGAGAGAGAGAGAGAGAAGAGAGACCCTATTTTCTCCTCTTCTTCTTTGGTTTCTCTTGTTGTTCTTCAATCTTTGGCATTTTAGACTGAGACCCATTTTTTCAATTTGGATGACACTTTACGAAGAGAATCCAAGGGAGTCTCACGAAGGTTTGGAAGGTGAGGATCTGTATGAGGAGCTGTGTAAGGCATGTGCAGGACCTCTTGTTGAAGTTTCTATCGATGGAGAAAGGGCTGAAAAGGAAATGGATGAAGTCTATGCTCAAATCACTTTATACCCAGAGGCTGAT

Coding sequence (CDS)

ATGACACTTTACGAAGAGAATCCAAGGGAGTCTCACGAAGGTTTGGAAGGTGAGGATCTGTATGAGGAGCTGTGTAAGGCATGTGCAGGACCTCTTGTTGAAGTTTCTATCGATGGAGAAAGGGCTGAAAAGGAAATGGATGAAGTCTATGCTCAAATCACTTTATACCCAGAGGCTGAT

Protein sequence

MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGERAEKEMDEVYAQITLYPEAD
Homology
[Close]
BLAST of MELO3C033303 vs. NCBI nr
Match: KAA0067844.1 (auxin response factor 11-like [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 2.5e-20
Identity = 60/96 (62.50%), Postives = 60/96 (62.50%), Query Frame = 0 

Query: 1  MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGER------------------- 60
          MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGER                   
Sbjct: 1  MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGERVFYFPQESTNQELIHQIPH 60

[Close]
BLAST of MELO3C033303 vs. NCBI nr
Match: KAA0059740.1 (auxin response factor 11-like [Cucumis melo var. makuwa])

HSP 1 Score: 105.1 bits (261), Expect = 2.1e-19
Identity = 52/60 (86.67%), Postives = 54/60 (90.00%), Query Frame = 0 

Query: 1  MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGERAEKEMDEVYAQITLYPEAD 60
          MTLYEEN  ES +GLEGEDLYEEL KACAGPLVEV IDGERA+KE DEVYAQITLYPEAD
Sbjct: 1  MTLYEENLGESRKGLEGEDLYEELWKACAGPLVEVPIDGERAKKETDEVYAQITLYPEAD 60

[Close]
BLAST of MELO3C033303 vs. NCBI nr
Match: TYK09454.1 (auxin response factor 18 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 2.7e-19
Identity = 51/60 (85.00%), Postives = 54/60 (90.00%), Query Frame = 0 

Query: 1  MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGERAEKEMDEVYAQITLYPEAD 60
          MTLYEEN  ES +GLEGEDLYEEL KACAGPLVEV +DGERA+KE DEVYAQITLYPEAD
Sbjct: 1  MTLYEENLGESRKGLEGEDLYEELWKACAGPLVEVPVDGERAKKETDEVYAQITLYPEAD 60

[Close]
BLAST of MELO3C033303 vs. NCBI nr
Match: KAA0050656.1 (auxin response factor 18 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.2e-14
Identity = 53/103 (51.46%), Postives = 55/103 (53.40%), Query Frame = 0 

Query: 1   MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGER------------------- 60
           MTLYEENP ES +GLEGEDLYEEL KACAGPLVEV +DGER                   
Sbjct: 1   MTLYEENPGESRKGLEGEDLYEELWKACAGPLVEVPVDGERVFYFPQGHMEQLEESTNQE 60

[Close]
BLAST of MELO3C033303 vs. NCBI nr
Match: XP_011659155.1 (auxin response factor 18 isoform X2 [Cucumis sativus] >KAE8646219.1 hypothetical protein Csa_016342 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 1.2e-14
Identity = 53/103 (51.46%), Postives = 55/103 (53.40%), Query Frame = 0 

Query: 1   MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGER------------------- 60
           MTLYEENP ES +GLEGEDLYEEL KACAGPLVEV +DGER                   
Sbjct: 1   MTLYEENPGESRKGLEGEDLYEELWKACAGPLVEVPVDGERVFYFPQGHMEQLEESTNQE 60

[Close]
BLAST of MELO3C033303 vs. ExPASy Swiss-Prot
Match: Q9ZPY6 (Auxin response factor 11 OS=Arabidopsis thaliana OX=3702 GN=ARF11 PE=2 SV=3)

HSP 1 Score: 43.9 bits (102), Expect = 7.5e-04
Identity = 33/91 (36.26%), Postives = 35/91 (38.46%), Query Frame = 0 

Query: 14  GLEGEDLYEELCKACAGPLVEVSIDGER-------------------------------- 61
           G   ++LY EL KACAGPLVEV   GER                                
Sbjct: 33  GSNDDELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFNLPP 92

[Close]
BLAST of MELO3C033303 vs. ExPASy TrEMBL
Match: A0A5A7VKA5 (Auxin response factor 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00520 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.2e-20
Identity = 60/96 (62.50%), Postives = 60/96 (62.50%), Query Frame = 0 

Query: 1  MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGER------------------- 60
          MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGER                   
Sbjct: 1  MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGERVFYFPQESTNQELIHQIPH 60

[Close]
BLAST of MELO3C033303 vs. ExPASy TrEMBL
Match: A0A5A7UX74 (Auxin response factor 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold551G00190 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-19
Identity = 52/60 (86.67%), Postives = 54/60 (90.00%), Query Frame = 0 

Query: 1  MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGERAEKEMDEVYAQITLYPEAD 60
          MTLYEEN  ES +GLEGEDLYEEL KACAGPLVEV IDGERA+KE DEVYAQITLYPEAD
Sbjct: 1  MTLYEENLGESRKGLEGEDLYEELWKACAGPLVEVPIDGERAKKETDEVYAQITLYPEAD 60

[Close]
BLAST of MELO3C033303 vs. ExPASy TrEMBL
Match: A0A5D3CE34 (Auxin response factor 18 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G00430 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.3e-19
Identity = 51/60 (85.00%), Postives = 54/60 (90.00%), Query Frame = 0 

Query: 1  MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGERAEKEMDEVYAQITLYPEAD 60
          MTLYEEN  ES +GLEGEDLYEEL KACAGPLVEV +DGERA+KE DEVYAQITLYPEAD
Sbjct: 1  MTLYEENLGESRKGLEGEDLYEELWKACAGPLVEVPVDGERAKKETDEVYAQITLYPEAD 60

[Close]
BLAST of MELO3C033303 vs. ExPASy TrEMBL
Match: A0A5D3C9C4 (Auxin response factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G00590 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.7e-15
Identity = 53/103 (51.46%), Postives = 55/103 (53.40%), Query Frame = 0 

Query: 1   MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGER------------------- 60
           MTLYEENP ES +GLEGEDLYEEL KACAGPLVEV +DGER                   
Sbjct: 1   MTLYEENPGESRKGLEGEDLYEELWKACAGPLVEVPVDGERVFYFPQGHMEQLEESTNQE 60

[Close]
BLAST of MELO3C033303 vs. ExPASy TrEMBL
Match: A0A5A7U902 (Auxin response factor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G001330 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.7e-15
Identity = 53/103 (51.46%), Postives = 55/103 (53.40%), Query Frame = 0 

Query: 1   MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGER------------------- 60
           MTLYEENP ES +GLEGEDLYEEL KACAGPLVEV +DGER                   
Sbjct: 1   MTLYEENPGESRKGLEGEDLYEELWKACAGPLVEVPVDGERVFYFPQGHMEQLEESTNQE 60

[Close]
BLAST of MELO3C033303 vs. TAIR 10
Match: AT2G46530.1 (auxin response factor 11 )

HSP 1 Score: 43.9 bits (102), Expect = 5.3e-05
Identity = 33/91 (36.26%), Postives = 35/91 (38.46%), Query Frame = 0 

Query: 14  GLEGEDLYEELCKACAGPLVEVSIDGER-------------------------------- 61
           G   ++LY EL KACAGPLVEV   GER                                
Sbjct: 12  GSNDDELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFNLPP 71

[Close]
BLAST of MELO3C033303 vs. TAIR 10
Match: AT2G46530.3 (auxin response factor 11 )

HSP 1 Score: 43.9 bits (102), Expect = 5.3e-05
Identity = 33/91 (36.26%), Postives = 35/91 (38.46%), Query Frame = 0 

Query: 14  GLEGEDLYEELCKACAGPLVEVSIDGER-------------------------------- 61
           G   ++LY EL KACAGPLVEV   GER                                
Sbjct: 33  GSNDDELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFNLPP 92

The following BLAST results are available for this feature:
BLAST of MELO3C033303 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0067844.12.5e-2062.50auxin response factor 11-like [Cucumis melo var. makuwa][more]
KAA0059740.12.1e-1986.67auxin response factor 11-like [Cucumis melo var. makuwa][more]
TYK09454.12.7e-1985.00auxin response factor 18 isoform X2 [Cucumis melo var. makuwa][more]
KAA0050656.11.2e-1451.46auxin response factor 18 isoform X2 [Cucumis melo var. makuwa][more]
XP_011659155.11.2e-1451.46auxin response factor 18 isoform X2 [Cucumis sativus] >KAE8646219.1 hypothetical... [more]
BLAST of MELO3C033303 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9ZPY67.5e-0436.26Auxin response factor 11 OS=Arabidopsis thaliana OX=3702 GN=ARF11 PE=2 SV=3[more]
BLAST of MELO3C033303 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VKA51.2e-2062.50Auxin response factor 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
A0A5A7UX741.0e-1986.67Auxin response factor 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
A0A5D3CE341.3e-1985.00Auxin response factor 18 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5D3C9C45.7e-1551.46Auxin response factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold17... [more]
A0A5A7U9025.7e-1551.46Auxin response factor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67... [more]
BLAST of MELO3C033303 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G46530.15.3e-0536.26auxin response factor 11 [more]
AT2G46530.35.3e-0536.26auxin response factor 11 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033303.1MELO3C033303.1mRNA