MELO3C032958.jh1.t1 (mRNA) Melon (Harukei-3) v1.41

Overview
NameMELO3C032958.jh1.t1
TypemRNA
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionGATA zinc finger domain-containing protein 10-like isoform X2
Locationchr08: 9950031 .. 9950399 (+)
Sequence length369
RNA-Seq ExpressionMELO3C032958.jh1.t1
SyntenyMELO3C032958.jh1.t1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACGATCTACCTATTGTACCTCCACCAGTTCATAGGGGACATGTTCGAGCGAAAGAAGCTGAACTTAATGAAGTTTACCATAATGTGGAAGAAGTGCCTCCTACGACACAAACACAGAGCCAAATTGGTTATGATAGTCCGATGACGATGATGCCAACATTTGGAGCATGATATTGTGATTCTGAGGTCGGTACAGGATAATATGATGCAGCGGTCGGTCCATCTAATTCTTACATGCATGGACATGAACGTGGCTATGAGAAACATAACGAATATTTGTATCATGAAGCACCTGCAAATGTATCATATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAAAACATAAAGTTCAG

mRNA sequence

ATGTACGATCTACCTATTGTACCTCCACCAGTTCATAGGGGACATGTTCGAGCGAAAGAAGCTGAACTTAATGAAGTTTACCATAATGTGGAAGAAGTGCCTCCTACGACACAAACACAGAGCCAAATTGGTTATGATAGTCCGATGACGATGATGCCAACATTTGGAGCATGATATTGTGATTCTGAGGTCGGTACAGGATAATATGATGCAGCGGTCGGTCCATCTAATTCTTACATGCATGGACATGAACGTGGCTATGAGAAACATAACGAATATTTGTATCATGAAGCACCTGCAAATGTATCATATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAAAACATAAAGTTCAG

Coding sequence (CDS)

ATGTACGATCTACCTATTGTACCTCCACCAGTTCATAGGGGACATGTTCGAGCGAAAGAAGCTGAACTTAATGAAGTTTACCATAATGTGGAAGAAGTGCCTCCTACGACACAAACACAGAGCCAAATTGGTTATGATAGTCCGATGACGATGATGCCAACATTTGGAGCATGA

Protein sequence

MYDLPIVPPPVHRGHVRAKEAELNEVYHNVEEVPPTTQTQSQIGYDSPMTMMPTFGA
Homology
[Close]
BLAST of MELO3C032958.jh1.t1 vs. NCBI nr
Match: KAA0062732.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK22530.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (303), Expect = 3.49e-34
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 1  MYDLPIVPPPVHRGHVRAKEAELNEVYHNVEEVPPTTQTQSQIGYDSPMTMMPTFGA 57
          MYDLPIVPPPVHRGHVRAK+AELNEVYHNVEEVPPTTQTQSQIGYDSPMTMMPTFGA
Sbjct: 36 MYDLPIVPPPVHRGHVRAKQAELNEVYHNVEEVPPTTQTQSQIGYDSPMTMMPTFGA 92

[Close]
BLAST of MELO3C032958.jh1.t1 vs. NCBI nr
Match: TYK16354.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 104 bits (260), Expect = 2.36e-27
Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = 0 

Query: 1  MYDLPIVPPPVHRGHVRAKEAELNEVYHNVEEVPPTTQTQSQIGYDSPMTMMPTFGA 57
          MYDLPIVP PVHRG VR +EAEL+EVYHNVEEVPPTTQTQSQ GY  PMTMMPTFGA
Sbjct: 1  MYDLPIVPQPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGRPMTMMPTFGA 57

[Close]
BLAST of MELO3C032958.jh1.t1 vs. NCBI nr
Match: KAA0061327.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (257), Expect = 6.76e-27
Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = 0 

Query: 1  MYDLPIVPPPVHRGHVRAKEAELNEVYHNVEEVPPTTQTQSQIGYDSPMTMMPTFGA 57
          MYDLPIVP PVHRG VR +EAEL+EVYHNVEEV PTTQTQSQ GY SPMTMMPTFGA
Sbjct: 1  MYDLPIVPQPVHRGRVRVEEAELDEVYHNVEEVSPTTQTQSQTGYGSPMTMMPTFGA 57

[Close]
BLAST of MELO3C032958.jh1.t1 vs. NCBI nr
Match: KAA0062992.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (257), Expect = 6.76e-27
Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = 0 

Query: 1  MYDLPIVPPPVHRGHVRAKEAELNEVYHNVEEVPPTTQTQSQIGYDSPMTMMPTFGA 57
          MYDLPIVP PVHRG VR +EAEL+EVYHNVEEV PTTQTQSQ GY SPMTMMPTFGA
Sbjct: 1  MYDLPIVPQPVHRGRVRVEEAELDEVYHNVEEVSPTTQTQSQTGYGSPMTMMPTFGA 57

[Close]
BLAST of MELO3C032958.jh1.t1 vs. NCBI nr
Match: TYK11193.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 106 bits (265), Expect = 3.53e-26
Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 0 

Query: 1   MYDLPIVPPPVHRGHVRAKEAELNEVYHNVEEVPPTTQTQSQIGYDSPMTMMPTFGA 57
           MYDL IVPPPVHRG VR +EAEL+EVYHNVEEVPPTTQTQSQ GY SPMTMMPTFGA
Sbjct: 173 MYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGA 229

[Close]
BLAST of MELO3C032958.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5D3DGQ9 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00120 PE=4 SV=1)

HSP 1 Score: 121 bits (303), Expect = 1.69e-34
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 1  MYDLPIVPPPVHRGHVRAKEAELNEVYHNVEEVPPTTQTQSQIGYDSPMTMMPTFGA 57
          MYDLPIVPPPVHRGHVRAK+AELNEVYHNVEEVPPTTQTQSQIGYDSPMTMMPTFGA
Sbjct: 36 MYDLPIVPPPVHRGHVRAKQAELNEVYHNVEEVPPTTQTQSQIGYDSPMTMMPTFGA 92

[Close]
BLAST of MELO3C032958.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5D3CZG9 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001380 PE=4 SV=1)

HSP 1 Score: 104 bits (260), Expect = 1.14e-27
Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = 0 

Query: 1  MYDLPIVPPPVHRGHVRAKEAELNEVYHNVEEVPPTTQTQSQIGYDSPMTMMPTFGA 57
          MYDLPIVP PVHRG VR +EAEL+EVYHNVEEVPPTTQTQSQ GY  PMTMMPTFGA
Sbjct: 1  MYDLPIVPQPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGRPMTMMPTFGA 57

[Close]
BLAST of MELO3C032958.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7V379 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold29891G00010 PE=4 SV=1)

HSP 1 Score: 103 bits (257), Expect = 3.27e-27
Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = 0 

Query: 1  MYDLPIVPPPVHRGHVRAKEAELNEVYHNVEEVPPTTQTQSQIGYDSPMTMMPTFGA 57
          MYDLPIVP PVHRG VR +EAEL+EVYHNVEEV PTTQTQSQ GY SPMTMMPTFGA
Sbjct: 1  MYDLPIVPQPVHRGRVRVEEAELDEVYHNVEEVSPTTQTQSQTGYGSPMTMMPTFGA 57

[Close]
BLAST of MELO3C032958.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7V422 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00920 PE=4 SV=1)

HSP 1 Score: 103 bits (257), Expect = 3.27e-27
Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = 0 

Query: 1  MYDLPIVPPPVHRGHVRAKEAELNEVYHNVEEVPPTTQTQSQIGYDSPMTMMPTFGA 57
          MYDLPIVP PVHRG VR +EAEL+EVYHNVEEV PTTQTQSQ GY SPMTMMPTFGA
Sbjct: 1  MYDLPIVPQPVHRGRVRVEEAELDEVYHNVEEVSPTTQTQSQTGYGSPMTMMPTFGA 57

[Close]
BLAST of MELO3C032958.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5D3CH23 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00320 PE=4 SV=1)

HSP 1 Score: 106 bits (265), Expect = 1.71e-26
Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 0 

Query: 1   MYDLPIVPPPVHRGHVRAKEAELNEVYHNVEEVPPTTQTQSQIGYDSPMTMMPTFGA 57
           MYDL IVPPPVHRG VR +EAEL+EVYHNVEEVPPTTQTQSQ GY SPMTMMPTFGA
Sbjct: 173 MYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGA 229

The following BLAST results are available for this feature:
BLAST of MELO3C032958.jh1.t1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062732.13.49e-3498.25GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
TYK16354.12.36e-2785.96GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
KAA0061327.16.76e-2785.96GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
KAA0062992.16.76e-2785.96GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
TYK11193.13.53e-2687.72mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
BLAST of MELO3C032958.jh1.t1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C032958.jh1.t1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DGQ91.69e-3498.25GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5D3CZG91.14e-2785.96GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5A7V3793.27e-2785.96GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5A7V4223.27e-2785.96GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5D3CH231.71e-2687.72Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
BLAST of MELO3C032958.jh1.t1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C032958.jh1MELO3C032958.jh1gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C032958.jh1.t1.exonMELO3C032958.jh1.t1.exonexon


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C032958.jh1.t1.start_codonMELO3C032958.jh1.t1.start_codonstart_codon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C032958.jh1.t1.cdsMELO3C032958.jh1.t1.cdsCDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C032958.jh1.t1.stop_codonMELO3C032958.jh1.t1.stop_codonstop_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C032958.jh1.t1MELO3C032958.jh1.t1-proteinpolypeptide