MELO3C032954.jh1.t1 (mRNA) Melon (Harukei-3) v1.41

Overview


Name	MELO3C032954.jh1.t1
Type	mRNA
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Retrotransposon protein
Location	chr08: 10062456 .. 10062725 (+)
Sequence length	270
RNA-Seq Expression	MELO3C032954.jh1.t1
Synteny	MELO3C032954.jh1.t1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGAGGTGATCAGGAGTGTAATGGAATTTGGAAATGAGCAATTAAAGGCAATTGCAGATTGGCCAAAAGAGAAGCATACAATGGAGATCGAAATGCGTGCTCAAGTTGTGAAACAACTGCAAGATATCCCCGAACTACGAAGCCAATATAGGACAAAGCTTAAGCAAATCTTATTCCGTAGTTTGGAGGCCATTGAGGGATTCTTGTCGATTCCAACAGAACTTAAATTGGAGTATTGCAATATTCTCTTGCAAAATAATGTTTGA

mRNA sequence

ATGGTAGAGGTGATCAGGAGTGTAATGGAATTTGGAAATGAGCAATTAAAGGCAATTGCAGATTGGCCAAAAGAGAAGCATACAATGGAGATCGAAATGCGTGCTCAAGTTGTGAAACAACTGCAAGATATCCCCGAACTACGAAGCCAATATAGGACAAAGCTTAAGCAAATCTTATTCCGTAGTTTGGAGGCCATTGAGGGATTCTTGTCGATTCCAACAGAACTTAAATTGGAGTATTGCAATATTCTCTTGCAAAATAATGTTTGA

Coding sequence (CDS)

ATGGTAGAGGTGATCAGGAGTGTAATGGAATTTGGAAATGAGCAATTAAAGGCAATTGCAGATTGGCCAAAAGAGAAGCATACAATGGAGATCGAAATGCGTGCTCAAGTTGTGAAACAACTGCAAGATATCCCCGAACTACGAAGCCAATATAGGACAAAGCTTAAGCAAATCTTATTCCGTAGTTTGGAGGCCATTGAGGGATTCTTGTCGATTCCAACAGAACTTAAATTGGAGTATTGCAATATTCTCTTGCAAAATAATGTTTGA

Protein sequence

MVEVIRSVMEFGNEQLKAIADWPKEKHTMEIEMRAQVVKQLQDIPELRSQYRTKLKQILFRSLEAIEGFLSIPTELKLEYCNILLQNNV

Homology

[Close]

BLAST of MELO3C032954.jh1.t1 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 152 bits (384), Expect = 2.84e-43
Identity = 80/88 (90.91%), Postives = 82/88 (93.18%), Query Frame = 0


Query: 2   VEVIRSVMEFGNEQLKAIADWPKEKHTMEIEMRAQVVKQLQDIPELRSQYRTKLKQILFR 61
           VEVIRSVMEFGNEQLKAIADWPKEK  ME+EMRAQVVKQLQDIP+LRSQ R KL QILFR
Sbjct: 219 VEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFR 278

Query: 62  SLEAIEGFLSIPTELKLEYCNILLQNNV 89
           SLEAIEGFLSIPTELKLEYCNILLQN V
Sbjct: 279 SLEAIEGFLSIPTELKLEYCNILLQNIV 306

[Close]

BLAST of MELO3C032954.jh1.t1 vs. NCBI nr
Match: KAA0062747.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 156 bits (394), Expect = 1.08e-42
Identity = 82/87 (94.25%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 3   EVIRSVMEFGNEQLKAIADWPKEKHTMEIEMRAQVVKQLQDIPELRSQYRTKLKQILFRS 62
           EVIRSVMEFGNEQLKAIADW KEK  MEIEMRAQVVKQLQDIPELRSQYRTKL QILFRS
Sbjct: 477 EVIRSVMEFGNEQLKAIADWTKEKRAMEIEMRAQVVKQLQDIPELRSQYRTKLMQILFRS 536

Query: 63  LEAIEGFLSIPTELKLEYCNILLQNNV 89
           LEAI GFLSIPTELKLEYCNILLQNNV
Sbjct: 537 LEAIGGFLSIPTELKLEYCNILLQNNV 563

[Close]

BLAST of MELO3C032954.jh1.t1 vs. NCBI nr
Match: KAA0031678.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (346), Expect = 4.97e-38
Identity = 69/89 (77.53%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 1   MVEVIRSVMEFGNEQLKAIADWPKEKHTMEIEMRAQVVKQLQDIPELRSQYRTKLKQILF 60
           MVEVI S  EFGN+QLK I DWPKEK   E+E+R +VVKQLQDIP+LRSQ R KL QILF
Sbjct: 175 MVEVISSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILF 234

Query: 61  RSLEAIEGFLSIPTELKLEYCNILLQNNV 89
           RS+EAIEGFLSIPT+LKLEYCNILL+NNV
Sbjct: 235 RSVEAIEGFLSIPTKLKLEYCNILLENNV 263

[Close]

BLAST of MELO3C032954.jh1.t1 vs. NCBI nr
Match: KAA0066604.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK14214.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 127 bits (319), Expect = 1.41e-35
Identity = 66/86 (76.74%), Postives = 74/86 (86.05%), Query Frame = 0


Query: 2   VEVIRSVMEFGNEQLKAIADWPKEKHTMEIEMRAQVVKQLQDIPELRSQYRTKLKQILFR 61
           VEVIRS MEFGN+QLK IA+WPKEK   E+E+RA+VVKQLQ+I EL S+ R KL QILF 
Sbjct: 43  VEVIRSAMEFGNDQLKTIANWPKEKRVTEVELRAEVVKQLQNILELPSRDRAKLMQILFH 102

Query: 62  SLEAIEGFLSIPTELKLEYCNILLQN 87
           S+EAIEGFLSIP ELKLEYCNILLQN
Sbjct: 103 SVEAIEGFLSIPIELKLEYCNILLQN 128

[Close]

BLAST of MELO3C032954.jh1.t1 vs. NCBI nr
Match: KAA0063430.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK11691.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 134 bits (336), Expect = 4.53e-35
Identity = 68/87 (78.16%), Postives = 76/87 (87.36%), Query Frame = 0


Query: 3   EVIRSVMEFGNEQLKAIADWPKEKHTMEIEMRAQVVKQLQDIPELRSQYRTKLKQILFRS 62
           E IRS+MEFGN+QLKAIA+WPKEK   E+E+  +VVKQLQDIPEL+SQ R KL QILFRS
Sbjct: 345 EYIRSLMEFGNDQLKAIANWPKEKRATEVELCVEVVKQLQDIPELQSQDRAKLMQILFRS 404

Query: 63  LEAIEGFLSIPTELKLEYCNILLQNNV 89
           +E IEGFLSIP ELKLEYCNILLQNNV
Sbjct: 405 VETIEGFLSIPLELKLEYCNILLQNNV 431

[Close]

BLAST of MELO3C032954.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 152 bits (384), Expect = 1.38e-43
Identity = 80/88 (90.91%), Postives = 82/88 (93.18%), Query Frame = 0


Query: 2   VEVIRSVMEFGNEQLKAIADWPKEKHTMEIEMRAQVVKQLQDIPELRSQYRTKLKQILFR 61
           VEVIRSVMEFGNEQLKAIADWPKEK  ME+EMRAQVVKQLQDIP+LRSQ R KL QILFR
Sbjct: 219 VEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFR 278

Query: 62  SLEAIEGFLSIPTELKLEYCNILLQNNV 89
           SLEAIEGFLSIPTELKLEYCNILLQN V
Sbjct: 279 SLEAIEGFLSIPTELKLEYCNILLQNIV 306

[Close]

BLAST of MELO3C032954.jh1.t1 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 152 bits (384), Expect = 1.38e-43
Identity = 80/88 (90.91%), Postives = 82/88 (93.18%), Query Frame = 0


Query: 2   VEVIRSVMEFGNEQLKAIADWPKEKHTMEIEMRAQVVKQLQDIPELRSQYRTKLKQILFR 61
           VEVIRSVMEFGNEQLKAIADWPKEK  ME+EMRAQVVKQLQDIP+LRSQ R KL QILFR
Sbjct: 219 VEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFR 278

Query: 62  SLEAIEGFLSIPTELKLEYCNILLQNNV 89
           SLEAIEGFLSIPTELKLEYCNILLQN V
Sbjct: 279 SLEAIEGFLSIPTELKLEYCNILLQNIV 306

[Close]

BLAST of MELO3C032954.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5D3DG22 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00290 PE=3 SV=1)

HSP 1 Score: 156 bits (394), Expect = 5.25e-43
Identity = 82/87 (94.25%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 3   EVIRSVMEFGNEQLKAIADWPKEKHTMEIEMRAQVVKQLQDIPELRSQYRTKLKQILFRS 62
           EVIRSVMEFGNEQLKAIADW KEK  MEIEMRAQVVKQLQDIPELRSQYRTKL QILFRS
Sbjct: 477 EVIRSVMEFGNEQLKAIADWTKEKRAMEIEMRAQVVKQLQDIPELRSQYRTKLMQILFRS 536

Query: 63  LEAIEGFLSIPTELKLEYCNILLQNNV 89
           LEAI GFLSIPTELKLEYCNILLQNNV
Sbjct: 537 LEAIGGFLSIPTELKLEYCNILLQNNV 563

[Close]

BLAST of MELO3C032954.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5D3BZU3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00280 PE=4 SV=1)

HSP 1 Score: 137 bits (346), Expect = 2.41e-38
Identity = 69/89 (77.53%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 1   MVEVIRSVMEFGNEQLKAIADWPKEKHTMEIEMRAQVVKQLQDIPELRSQYRTKLKQILF 60
           MVEVI S  EFGN+QLK I DWPKEK   E+E+R +VVKQLQDIP+LRSQ R KL QILF
Sbjct: 175 MVEVISSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILF 234

Query: 61  RSLEAIEGFLSIPTELKLEYCNILLQNNV 89
           RS+EAIEGFLSIPT+LKLEYCNILL+NNV
Sbjct: 235 RSVEAIEGFLSIPTKLKLEYCNILLENNV 263

[Close]

BLAST of MELO3C032954.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5D3CT52 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5G00400 PE=4 SV=1)

HSP 1 Score: 127 bits (319), Expect = 6.82e-36
Identity = 66/86 (76.74%), Postives = 74/86 (86.05%), Query Frame = 0


Query: 2   VEVIRSVMEFGNEQLKAIADWPKEKHTMEIEMRAQVVKQLQDIPELRSQYRTKLKQILFR 61
           VEVIRS MEFGN+QLK IA+WPKEK   E+E+RA+VVKQLQ+I EL S+ R KL QILF 
Sbjct: 43  VEVIRSAMEFGNDQLKTIANWPKEKRVTEVELRAEVVKQLQNILELPSRDRAKLMQILFH 102

Query: 62  SLEAIEGFLSIPTELKLEYCNILLQN 87
           S+EAIEGFLSIP ELKLEYCNILLQN
Sbjct: 103 SVEAIEGFLSIPIELKLEYCNILLQN 128

The following BLAST results are available for this feature:

BLAST of MELO3C032954.jh1.t1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441954.1	2.84e-43	90.91	PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret...	[more]
KAA0062747.1	1.08e-42	94.25	retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon p...	[more]
KAA0031678.1	4.97e-38	77.53	retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon p...	[more]
KAA0066604.1	1.41e-35	76.74	retrotransposon protein [Cucumis melo var. makuwa] >TYK14214.1 retrotransposon p...	[more]
KAA0063430.1	4.53e-35	78.16	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK11691.1 putative nucleas...	[more]

BLAST of MELO3C032954.jh1.t1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C032954.jh1.t1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U0H7	1.38e-43	90.91	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B4L3	1.38e-43	90.91	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]
A0A5D3DG22	5.25e-43	94.25	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BZU3	2.41e-38	77.53	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CT52	6.82e-36	76.74	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C032954.jh1.t1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C032954.jh1	MELO3C032954.jh1	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C032954.jh1.t1.exon	MELO3C032954.jh1.t1.exon	exon

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C032954.jh1.t1.start_codon	MELO3C032954.jh1.t1.start_codon	start_codon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C032954.jh1.t1.cds	MELO3C032954.jh1.t1.cds	CDS

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C032954.jh1.t1.stop_codon	MELO3C032954.jh1.t1.stop_codon	stop_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C032954.jh1.t1	MELO3C032954.jh1.t1-protein	polypeptide