MELO3C029091.jh1.t1 (mRNA) Melon (Harukei-3) v1.41

Overview
NameMELO3C029091.jh1.t1
TypemRNA
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRetrotransposon protein
Locationchr01: 20867692 .. 20870168 (+)
Sequence length866
RNA-Seq ExpressionMELO3C029091.jh1.t1
SyntenyMELO3C029091.jh1.t1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCAACAAACACTCATTGGCGTTTTAACTGCGTTCACGCTGGCCCAAACGTCAGATCTTACTAACGTTAGAGCTACTAATAAACGACAATAGGTGTATCACACATACACCGTTCGATACATGCCATAGAATAAGGCAGCTTGCGTACTTTCGCATGATACACGAGTCAAATCTTGTGTGTCGCCAAAGCACGCGAATGGACAGACAAACTTTCGCAATTCTATGTCATTTACTTCGAACTGTATCTGGTCTTTCGTCCATCGTGATTGTCGACGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCTTTGCCCATGACGTGAAGAACCGAATCATTCAAAGGAAATTTGTACGGTCTGGTGAGACAGTATCGCGACATTTTAACCTTATACTATTGGTTGTCGTTCGACTATACGAGGAGTTGATAAAGAGACCTGTTCCGGTGACAAACAACTGCAATGATCAACGTAGGAAGTGTTTCGAGGTGGGCATGGTTCAAGTTTAATGTATTTGAGCTTAATGTACGGGGCACTTATATCGGCGTGTTTATTACAACCTGCAGAATTGCCTTGGCGCGTTAGACGGAACGTACATAAAGGTGAAATGTCCCCACAACAGATTAGCCTACATTCAGAACACGTAAGGGGGAAATTGCCACAAACGTACTAGACATGTGCGACACAAATGGAGATTTTTTTTATGTCCTCGCCGGTTGGAAAGGATCCGCGGCAGACTCGCGGATTTACGTGATGCCCTTTCACGAGAAAATGGACTACAAGTGTCAAATGGTATATCTTATTTATAATAAAACAACGTCGCTTTCTACTTACCTATTCAAAGCGCTTAAACGAATGTTTTAATAACAGTATATTATTATATGTGCGATGCGAGTTATCCAAATGCGGAGGGGTTTCTTGGCCCGTATAGAGGCCAACGGTACCATTTGCAAGAGTGCCGTGGTGCTGGAAATGCGCCAACAAATACAAAGGAGTACTTCAACATGAAGCACTCCTCGGCAAGGAATGTCATTGAGCGCGCCTTCAGTGTTCTTAAGGGTCGTTGGACCATTCTTCGTGGAAAGTCATACTATCCCCTGCAAGTCCAGTGTCGCACCATACTAGCATGTTGCTTGCTCCACAATTTGATCAACAGAGAAATGACATATTGCAATGACGTTGACGACGTGGATGAGGAGGACTCCACGTATGTGATGACCACCGCTTCAGAAGACATTCACTACATTAAGACGACAAATGAGTGGTCTCAGTGGCGCGACGAACTAGCCGAATCGATGTTCACTGATTGGCAGTTGCGTAACGCTTAGATAAGATAATTTTACATTACAAGTCATCGATTGTATGCTAATTTCTATCACCTATAAAATGTATTGTTGCATATGAAATGTACGCGTGCCTTTTGTTTATGACTGTTAAATGTGAAATTGTGAAATTACTAACGTACTCCATGTATTTTTGGTAATTTGTCATTCACAGTATGTTAACCTCAAACCGTGCCCCGAGACATGTCTGGACAAAGGAGGAGGAGGACACTCTTATGGAGTGTTTAGTGGAGTTGGTGTCAATGGGGGATGGAAATCGGATAATGGCACATTCCGACCAGGTTACTTGGCCCAGTTGGTACGCATGATGGCGGAGAAACTACCTGGATGTCAGTTCCGGCAACGACTGTAATTGACTGTAGAATAAAGACACTGAAGCGAACATTCCAGGCCATCGCCGAAATGTGGGAGCCAGCGTGCAGTGGCTTTTGGTGGAACGACGAACAAAAATGTATCATTGCGGAGAAAGAATTATTTGATAATTGGGTTAGGGTAAGGAAAATAATATAAACGTCACACAACGTTCGCAATTTTTATATCAATACTCATAAGTGATCTTTTTTTCCCCGTAGTCGCATCCTGCAGCGAAGGGACTCCTGAACAAATCGTTTCCATATAATGACAAACTTACATATGTGTTCAGTCGCCATAGGGCAATGGGTCGGTTTACTGAGACATTCACCGATGTGGGGTCTAACGAGCCTGGCGAGTATGACGAATTTGATATGGCAAATGGAAACGAGGTGTTCCCGCCCGTGTACAACCAGGGGATTGACCTGTCGCAGGACGATGTACGCGTCTCACGACCTTCTCGCGATTCAGAGGGTAAGACCGAATCGAGTGGATCCAAGAGGAAGAGGGGAAGTCAGAAGCCATACATTTGGCACTCGACCAAACAAACGAGCAACTCAGAATGATTGCAGAGTGACATGCACGCGCCCTTGCTAATGACAACCATGTGTGCATGGAATTCTTTCGCATATTGCGTGAGATGTCGAAATTAACGAGTTTGGATAAGGGGCTATTGCAAAGACATCTTCTGTCTCGTATGGACGACCTTTGGGGTTTCGTGCTCATGCTTGAGGATGAGAGGGATGGATTTTGTAGAGTCCTCCTACGAGACATCATGAGATAG

mRNA sequence

ATGGATCAACAAACACTCATTGGCGTTTTAACTGCGTTCACGCTGGCCCAAACGTCAGATCTTACTAACTATGTTAACCTCAAACCGTGCCCCGAGACATGTCTGGACAAAGGAGGAGGAGGACACTCTTATGGAGTGTTTAGTGGAGTTGGTGTCAATGGGGGATGGAAATCGGATAATGGCACATTCCGACCAGGTTACTTGGCCCAGTTGGTACGCATGATGGCGGAGAAACTACCTGGATGTCAGTTCCGGCAACGACTGTAATTGACTGTAGAATAAAGACACTGAAGCGAACATTCCAGGCCATCGCCGAAATGTGGGAGCCAGCGTGCAGTGGCTTTTGGTGGAACGACGAACAAAAATGTATCATTGCGGAGAAAGAATTATTTGATAATTGGGTTAGGTCGCATCCTGCAGCGAAGGGACTCCTGAACAAATCGTTTCCATATAATGACAAACTTACATATGTGTTCAGTCGCCATAGGGCAATGGGTCGGTTTACTGAGACATTCACCGATGTGGGGTCTAACGAGCCTGGCGAGTATGACGAATTTGATATGGCAAATGGAAACGAGGTGTTCCCGCCCGTGTACAACCAGGGGATTGACCTGTCGCAGGACGATGTACGCGTCTCACGACCTTCTCGCGATTCAGAGGGTAAGACCGAATCGAGTGGATCCAAGAGGAAGAGGGGAAAATTCTTTCGCATATTGCGTGAGATGTCGAAATTAACGAGTTTGGATAAGGGGCTATTGCAAAGACATCTTCTGTCTCGTATGGACGACCTTTGGGGTTTCGTGCTCATGCTTGAGGATGAGAGGGATGGATTTTGTAGAGTCCTCCTACGAGACATCATGAGATAG

Coding sequence (CDS)

ATGTCAGTTCCGGCAACGACTGTAATTGACTGTAGAATAAAGACACTGAAGCGAACATTCCAGGCCATCGCCGAAATGTGGGAGCCAGCGTGCAGTGGCTTTTGGTGGAACGACGAACAAAAATGTATCATTGCGGAGAAAGAATTATTTGATAATTGGGTTAGGTCGCATCCTGCAGCGAAGGGACTCCTGAACAAATCGTTTCCATATAATGACAAACTTACATATGTGTTCAGTCGCCATAGGGCAATGGGTCGGTTTACTGAGACATTCACCGATGTGGGGTCTAACGAGCCTGGCGAGTATGACGAATTTGATATGGCAAATGGAAACGAGGTGTTCCCGCCCGTGTACAACCAGGGGATTGACCTGTCGCAGGACGATGTACGCGTCTCACGACCTTCTCGCGATTCAGAGGGTAAGACCGAATCGAGTGGATCCAAGAGGAAGAGGGGAAAATTCTTTCGCATATTGCGTGAGATGTCGAAATTAACGAGTTTGGATAAGGGGCTATTGCAAAGACATCTTCTGTCTCGTATGGACGACCTTTGGGGTTTCGTGCTCATGCTTGAGGATGAGAGGGATGGATTTTGTAGAGTCCTCCTACGAGACATCATGAGATAG

Protein sequence

MSVPATTVIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAEKELFDNWVRSHPAAKGLLNKSFPYNDKLTYVFSRHRAMGRFTETFTDVGSNEPGEYDEFDMANGNEVFPPVYNQGIDLSQDDVRVSRPSRDSEGKTESSGSKRKRGKFFRILREMSKLTSLDKGLLQRHLLSRMDDLWGFVLMLEDERDGFCRVLLRDIMR
Homology
[Close]
BLAST of MELO3C029091.jh1.t1 vs. NCBI nr
Match: KAA0066208.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 327 bits (839), Expect = 4.26e-110
Identity = 172/246 (69.92%), Postives = 183/246 (74.39%), Query Frame = 0 

Query: 3   VPATTVIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAEKELFDNWVRSHPAAKG 62
           V ATTVIDCRIKTLKRTFQAIAEM  PACSGF WNDE+KCIIAEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKG 120

Query: 63  LLNKSFPYNDKLTYVFSRHRAMGRFTETFTDVGSNEPGE-YDEFDMANGNEVFPPVYNQG 122
           LLNK FPY D+LTYVF R RA GRF ETF DVGSNEPG  YD FDM +GNE FPPVY+QG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 123 IDLSQDDVRVSRPSRDSEGKTESSGSKRKRG----------------------------- 182
           +D+SQDDVR SRPSR SEG+T SSGSKRKRG                             
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPA 240

Query: 183 -----------KFFRILREMSKLTSLDKGLLQRHLLSRMDDLWGFVLMLEDERDGFCRVL 207
                      +FFRILREM +LTSLD+ LLQRHLLSRMDDLWGFVLM EDER+GFCRVL
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLWGFVLMPEDEREGFCRVL 300

[Close]
BLAST of MELO3C029091.jh1.t1 vs. NCBI nr
Match: KAA0064022.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 323 bits (829), Expect = 1.41e-108
Identity = 171/246 (69.51%), Postives = 183/246 (74.39%), Query Frame = 0 

Query: 3   VPATTVIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAEKELFDNWVRSHPAAKG 62
           V ATTVIDCRIKTLKRTFQAIAEM  PACSGF WNDE+KCI+AEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 63  LLNKSFPYNDKLTYVFSRHRAMGRFTETFTDVGSNEPGE-YDEFDMANGNEVFPPVYNQG 122
           LLNKSFPY D+LTYVF R RA GRF ETF DVGSNEPG  YD FDM +GNE FPPVY+QG
Sbjct: 121 LLNKSFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 123 IDLSQDDVRVSRPSRDSEGKTESSGSKRKRG----------------------------- 182
           +D+SQDDVR SRPSR SEG+T SSGSKRKRG                             
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIVEWPA 240

Query: 183 -----------KFFRILREMSKLTSLDKGLLQRHLLSRMDDLWGFVLMLEDERDGFCRVL 207
                      KFFRILREM +LTSLD+ LLQRHLLSRMDDL GFVLM ED+R+GFCRVL
Sbjct: 241 RNLANDNHVRTKFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDKREGFCRVL 300

[Close]
BLAST of MELO3C029091.jh1.t1 vs. NCBI nr
Match: TYK10915.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15088.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 322 bits (824), Expect = 1.48e-108
Identity = 170/246 (69.11%), Postives = 182/246 (73.98%), Query Frame = 0 

Query: 3   VPATTVIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAEKELFDNWVRSHPAAKG 62
           V ATTVIDCRIKTLKRTFQAIAEM  PACSGF WNDE+KCI+AEKELFDNWVRSHPAAKG
Sbjct: 11  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 70

Query: 63  LLNKSFPYNDKLTYVFSRHRAMGRFTETFTDVGSNEPGE-YDEFDMANGNEVFPPVYNQG 122
           LLNK FPY D+LTYVF R RA GRF ETF DVGSNEPG  YD FDM +GNE FPPVY+QG
Sbjct: 71  LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 130

Query: 123 IDLSQDDVRVSRPSRDSEGKTESSGSKRKRG----------------------------- 182
           +D+SQDDVR SRPSR SEG+T SSGSKRKRG                             
Sbjct: 131 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPA 190

Query: 183 -----------KFFRILREMSKLTSLDKGLLQRHLLSRMDDLWGFVLMLEDERDGFCRVL 207
                      +FFRILREM +LTSLD+ LLQRHLLSRMDDL GFVLM EDER+GFCRVL
Sbjct: 191 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 250

[Close]
BLAST of MELO3C029091.jh1.t1 vs. NCBI nr
Match: KAA0058882.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 322 bits (826), Expect = 4.03e-108
Identity = 170/246 (69.11%), Postives = 182/246 (73.98%), Query Frame = 0 

Query: 3   VPATTVIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAEKELFDNWVRSHPAAKG 62
           V ATTVIDCRIKTLKRTFQAIAEM  PACSGF WNDE+KCI+AEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 63  LLNKSFPYNDKLTYVFSRHRAMGRFTETFTDVGSNEPGE-YDEFDMANGNEVFPPVYNQG 122
           LLNK FPY D+LTYVF R RA GRF ET+ DVGSNEPG  YD FDM +GNE FPPVY+QG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETYADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 123 IDLSQDDVRVSRPSRDSEGKTESSGSKRKRG----------------------------- 182
           +D+SQDDVR SRPSR SEG+T SSGSKRKRG                             
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPA 240

Query: 183 -----------KFFRILREMSKLTSLDKGLLQRHLLSRMDDLWGFVLMLEDERDGFCRVL 207
                      KFFRILREM +LTSLD+ LLQRHLLSRMDDL GFVLM EDER+GFCRVL
Sbjct: 241 RNLANDNHVRTKFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMSEDEREGFCRVL 300

[Close]
BLAST of MELO3C029091.jh1.t1 vs. NCBI nr
Match: KAA0035775.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 322 bits (824), Expect = 8.11e-108
Identity = 169/246 (68.70%), Postives = 183/246 (74.39%), Query Frame = 0 

Query: 3   VPATTVIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAEKELFDNWVRSHPAAKG 62
           V ATTVIDCRIKTLK+TFQAIAEM +PACSGF WNDE+KCI+AEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKQTFQAIAEMRDPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 63  LLNKSFPYNDKLTYVFSRHRAMGRFTETFTDVGSNEPGE-YDEFDMANGNEVFPPVYNQG 122
           LLNK FPY D+LTYVF R RA  RF ETF DVGSNEPG  YD FDM +GNE FPPVY+QG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATDRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 123 IDLSQDDVRVSRPSRDSEGKTESSGSKRKRG----------------------------- 182
           +D+SQDDVR SRPSR SEG+T SSGSKRKRG                             
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSHRDFELEAIHLALDQTNEQLRQIAEWPA 240

Query: 183 -----------KFFRILREMSKLTSLDKGLLQRHLLSRMDDLWGFVLMLEDERDGFCRVL 207
                      +FFRILREM +LTSLD+ LLQRHLLSRMDDL GFVLMLEDER+GFCRVL
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMLEDEREGFCRVL 300

[Close]
BLAST of MELO3C029091.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7VES2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002250 PE=4 SV=1)

HSP 1 Score: 327 bits (839), Expect = 2.06e-110
Identity = 172/246 (69.92%), Postives = 183/246 (74.39%), Query Frame = 0 

Query: 3   VPATTVIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAEKELFDNWVRSHPAAKG 62
           V ATTVIDCRIKTLKRTFQAIAEM  PACSGF WNDE+KCIIAEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKG 120

Query: 63  LLNKSFPYNDKLTYVFSRHRAMGRFTETFTDVGSNEPGE-YDEFDMANGNEVFPPVYNQG 122
           LLNK FPY D+LTYVF R RA GRF ETF DVGSNEPG  YD FDM +GNE FPPVY+QG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 123 IDLSQDDVRVSRPSRDSEGKTESSGSKRKRG----------------------------- 182
           +D+SQDDVR SRPSR SEG+T SSGSKRKRG                             
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPA 240

Query: 183 -----------KFFRILREMSKLTSLDKGLLQRHLLSRMDDLWGFVLMLEDERDGFCRVL 207
                      +FFRILREM +LTSLD+ LLQRHLLSRMDDLWGFVLM EDER+GFCRVL
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLWGFVLMPEDEREGFCRVL 300

[Close]
BLAST of MELO3C029091.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7V6Q9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold99G00200 PE=4 SV=1)

HSP 1 Score: 323 bits (829), Expect = 6.82e-109
Identity = 171/246 (69.51%), Postives = 183/246 (74.39%), Query Frame = 0 

Query: 3   VPATTVIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAEKELFDNWVRSHPAAKG 62
           V ATTVIDCRIKTLKRTFQAIAEM  PACSGF WNDE+KCI+AEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 63  LLNKSFPYNDKLTYVFSRHRAMGRFTETFTDVGSNEPGE-YDEFDMANGNEVFPPVYNQG 122
           LLNKSFPY D+LTYVF R RA GRF ETF DVGSNEPG  YD FDM +GNE FPPVY+QG
Sbjct: 121 LLNKSFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 123 IDLSQDDVRVSRPSRDSEGKTESSGSKRKRG----------------------------- 182
           +D+SQDDVR SRPSR SEG+T SSGSKRKRG                             
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIVEWPA 240

Query: 183 -----------KFFRILREMSKLTSLDKGLLQRHLLSRMDDLWGFVLMLEDERDGFCRVL 207
                      KFFRILREM +LTSLD+ LLQRHLLSRMDDL GFVLM ED+R+GFCRVL
Sbjct: 241 RNLANDNHVRTKFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDKREGFCRVL 300

[Close]
BLAST of MELO3C029091.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5D3CHA0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00970 PE=4 SV=1)

HSP 1 Score: 322 bits (824), Expect = 7.18e-109
Identity = 170/246 (69.11%), Postives = 182/246 (73.98%), Query Frame = 0 

Query: 3   VPATTVIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAEKELFDNWVRSHPAAKG 62
           V ATTVIDCRIKTLKRTFQAIAEM  PACSGF WNDE+KCI+AEKELFDNWVRSHPAAKG
Sbjct: 11  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 70

Query: 63  LLNKSFPYNDKLTYVFSRHRAMGRFTETFTDVGSNEPGE-YDEFDMANGNEVFPPVYNQG 122
           LLNK FPY D+LTYVF R RA GRF ETF DVGSNEPG  YD FDM +GNE FPPVY+QG
Sbjct: 71  LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 130

Query: 123 IDLSQDDVRVSRPSRDSEGKTESSGSKRKRG----------------------------- 182
           +D+SQDDVR SRPSR SEG+T SSGSKRKRG                             
Sbjct: 131 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPA 190

Query: 183 -----------KFFRILREMSKLTSLDKGLLQRHLLSRMDDLWGFVLMLEDERDGFCRVL 207
                      +FFRILREM +LTSLD+ LLQRHLLSRMDDL GFVLM EDER+GFCRVL
Sbjct: 191 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 250

[Close]
BLAST of MELO3C029091.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7USM3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00480 PE=4 SV=1)

HSP 1 Score: 322 bits (826), Expect = 1.95e-108
Identity = 170/246 (69.11%), Postives = 182/246 (73.98%), Query Frame = 0 

Query: 3   VPATTVIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAEKELFDNWVRSHPAAKG 62
           V ATTVIDCRIKTLKRTFQAIAEM  PACSGF WNDE+KCI+AEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 63  LLNKSFPYNDKLTYVFSRHRAMGRFTETFTDVGSNEPGE-YDEFDMANGNEVFPPVYNQG 122
           LLNK FPY D+LTYVF R RA GRF ET+ DVGSNEPG  YD FDM +GNE FPPVY+QG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETYADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 123 IDLSQDDVRVSRPSRDSEGKTESSGSKRKRG----------------------------- 182
           +D+SQDDVR SRPSR SEG+T SSGSKRKRG                             
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPA 240

Query: 183 -----------KFFRILREMSKLTSLDKGLLQRHLLSRMDDLWGFVLMLEDERDGFCRVL 207
                      KFFRILREM +LTSLD+ LLQRHLLSRMDDL GFVLM EDER+GFCRVL
Sbjct: 241 RNLANDNHVRTKFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMSEDEREGFCRVL 300

[Close]
BLAST of MELO3C029091.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7TRV1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold153G00290 PE=4 SV=1)

HSP 1 Score: 322 bits (824), Expect = 3.93e-108
Identity = 170/246 (69.11%), Postives = 182/246 (73.98%), Query Frame = 0 

Query: 3   VPATTVIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAEKELFDNWVRSHPAAKG 62
           V ATTVIDCRIKTLKRTFQAIAEM  PACSGF WNDE+KCI+AEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 63  LLNKSFPYNDKLTYVFSRHRAMGRFTETFTDVGSNEPGE-YDEFDMANGNEVFPPVYNQG 122
           LLNK FPY D+LTYVF R RA GRF ETF DVGSNEPG  YD FDM +GNE FPPVY+QG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 123 IDLSQDDVRVSRPSRDSEGKTESSGSKRKRG----------------------------- 182
           +D+SQDDVR SRPSR SEG+T SSGSKRKRG                             
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPA 240

Query: 183 -----------KFFRILREMSKLTSLDKGLLQRHLLSRMDDLWGFVLMLEDERDGFCRVL 207
                      +FFRILREM +LTSLD+ LLQRHLLSRMDDL GFVLM EDER+GFCRVL
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300

[Close]
BLAST of MELO3C029091.jh1.t1 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 4.4e-06
Identity = 28/106 (26.42%), Postives = 52/106 (49.06%), Query Frame = 0 

Query: 8   VIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAEKELFDNWVRSHPAAKGLLNKS 67
           V+  R K L+R +  I  + E   +GF W+  +  +IA+ ++++ ++++HP A+    K+
Sbjct: 377 VLKNRYKHLRRLYNDIKFLLEQ--NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKT 436

Query: 68  FPYNDKLTYVFSRHRAMGRFT--------ETFTDVGSNEPGEYDEF 106
            P    L ++F +  + GR+T             V  NE G  D F
Sbjct: 437 IPSYPNLCFIFGKETSDGRYTRLAQAFDPSPAETVRMNESGSTDGF 480

[Close]
BLAST of MELO3C029091.jh1.t1 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 9.1e-04
Identity = 34/141 (24.11%), Postives = 61/141 (43.26%), Query Frame = 0 

Query: 8   VIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAEKELFDNWVRSHPAAKGLLNKS 67
           V+  R KTL+  F+++  +      GF W+D ++ ++A+  ++D +++ HP ++    KS
Sbjct: 65  VLKNRHKTLRNLFKSVNNLLIE--DGFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKS 124

Query: 68  FPYNDKLTYVF----SRHRAMGRFTETFTDVGSNEPGEYDEF-------DMANGNEV--- 127
            P    L  V+    S H+A    +E  +     E   Y+           + G+ V   
Sbjct: 125 IPCYKDLCLVYSDGMSEHKAEESISEGESKTLIQEDDGYNRICESSTVRSNSKGSSVTRC 184

Query: 128 ----FPPVYNQGIDLSQDDVR 131
                PP+    IDL  D  R
Sbjct: 185 RTTWHPPMDRYFIDLMLDQAR 203

[Close]
BLAST of MELO3C029091.jh1.t1 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 41.6 bits (96), Expect = 9.1e-04
Identity = 34/141 (24.11%), Postives = 61/141 (43.26%), Query Frame = 0 

Query: 8   VIDCRIKTLKRTFQAIAEMWEPACSGFWWNDEQKCIIAEKELFDNWVRSHPAAKGLLNKS 67
           V+  R KTL+  F+++  +      GF W+D ++ ++A+  ++D +++ HP ++    KS
Sbjct: 65  VLKNRHKTLRNLFKSVNNLLIE--DGFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKS 124

Query: 68  FPYNDKLTYVF----SRHRAMGRFTETFTDVGSNEPGEYDEF-------DMANGNEV--- 127
            P    L  V+    S H+A    +E  +     E   Y+           + G+ V   
Sbjct: 125 IPCYKDLCLVYSDGMSEHKAEESISEGESKTLIQEDDGYNRICESSTVRSNSKGSSVTRC 184

Query: 128 ----FPPVYNQGIDLSQDDVR 131
                PP+    IDL  D  R
Sbjct: 185 RTTWHPPMDRYFIDLMLDQAR 203

The following BLAST results are available for this feature:
BLAST of MELO3C029091.jh1.t1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0066208.14.26e-11069.92retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0064022.11.41e-10869.51retrotransposon protein [Cucumis melo var. makuwa][more]
TYK10915.11.48e-10869.11retrotransposon protein [Cucumis melo var. makuwa] >TYK15088.1 retrotransposon p... [more]
KAA0058882.14.03e-10869.11retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0035775.18.11e-10868.70retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C029091.jh1.t1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C029091.jh1.t1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VES22.06e-11069.92Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7V6Q96.82e-10969.51Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CHA07.18e-10969.11Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7USM31.95e-10869.11Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TRV13.93e-10869.11Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MELO3C029091.jh1.t1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G24960.24.4e-0626.42unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT4G02210.19.1e-0424.11unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G02210.29.1e-0424.11unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..148
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..148
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 9..152

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C029091.jh1MELO3C029091.jh1gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C029091.jh1.t1.exonMELO3C029091.jh1.t1.exonexon
MELO3C029091.jh1.t1.exonMELO3C029091.jh1.t1.exon_2exon
MELO3C029091.jh1.t1.exonMELO3C029091.jh1.t1.exon_3exon
MELO3C029091.jh1.t1.exonMELO3C029091.jh1.t1.exon_4exon


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C029091.jh1.t1.start_codonMELO3C029091.jh1.t1.start_codonstart_codon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C029091.jh1.t1.cdsMELO3C029091.jh1.t1.cdsCDS
MELO3C029091.jh1.t1.cdsMELO3C029091.jh1.t1.cds_2CDS
MELO3C029091.jh1.t1.cdsMELO3C029091.jh1.t1.cds_3CDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C029091.jh1.t1.stop_codonMELO3C029091.jh1.t1.stop_codonstop_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C029091.jh1.t1MELO3C029091.jh1.t1-proteinpolypeptide