MELO3C027644.1 (mRNA) Melon (DHL92) v4

Overview
NameMELO3C027644.1
TypemRNA
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionTPRXL protein
Locationchr08: 21861287 .. 21861460 (+)
Sequence length174
RNA-Seq ExpressionMELO3C027644.1
SyntenyMELO3C027644.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGACAGCATATGAAGAAAGAGATGAAGCAAGAGATCAACTGCAGAAGGAAACAATGTGTGCCAAGGAGTACTGGAACCAACATGAAAAATGGTGGTCGTTGTCAAGTTACTATGATATTGTAAAAGGAGAAGGAAACAATAATGCCAATCCTACTATGATATTATGTACATAA

mRNA sequence

CAGACAGCATATGAAGAAAGAGATGAAGCAAGAGATCAACTGCAGAAGGAAACAATGTGTGCCAAGGAGTACTGGAACCAACATGAAAAATGGTGGTCGTTGTCAAGTTACTATGATATTGTAAAAGGAGAAGGAAACAATAATGCCAATCCTACTATGATATTATGTACATAA

Coding sequence (CDS)

ATGTGTGCCAAGGAGTACTGGAACCAACATGAAAAATGGTGGTCGTTGTCAAGTTACTATGATATTGTAAAAGGAGAAGGAAACAATAATGCCAATCCTACTATGATATTATGTACATAA

Protein sequence

MCAKEYWNQHEKWWSLSSYYDIVKGEGNNNANPTMILCT
Homology
[Close]
BLAST of MELO3C027644.1 vs. NCBI nr
Match: KAA0054205.1 (TPRXL protein [Cucumis melo var. makuwa] >TYK15058.1 TPRXL protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 2.8e-09
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 1  MCAKEYWNQHEKWWSLSSYYDIVKGEGNNNANPTM 36
          MCA+EYWNQHEKWWSLSSYYDIVKGEG NN N TM
Sbjct: 45 MCAEEYWNQHEKWWSLSSYYDIVKGEG-NNINHTM 78

[Close]
BLAST of MELO3C027644.1 vs. ExPASy TrEMBL
Match: A0A5A7UKK3 (TPRXL protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G001080 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.4e-09
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 1  MCAKEYWNQHEKWWSLSSYYDIVKGEGNNNANPTM 36
          MCA+EYWNQHEKWWSLSSYYDIVKGEG NN N TM
Sbjct: 45 MCAEEYWNQHEKWWSLSSYYDIVKGEG-NNINHTM 78

The following BLAST results are available for this feature:
BLAST of MELO3C027644.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0054205.12.8e-0988.57TPRXL protein [Cucumis melo var. makuwa] >TYK15058.1 TPRXL protein [Cucumis melo... [more]
BLAST of MELO3C027644.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C027644.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UKK31.4e-0988.57TPRXL protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G001080 ... [more]
BLAST of MELO3C027644.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C027644MELO3C027644gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C027644.1:exon:244422MELO3C027644.1:exon:244422exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C027644.1:five_prime_utrMELO3C027644.1:five_prime_utrfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C027644.1:cdsMELO3C027644.1:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C027644.1MELO3C027644.1-proteinpolypeptide