MELO3C024966.jh1.t1 (mRNA) Melon (Harukei-3) v1.41

Overview


Name	MELO3C024966.jh1.t1
Type	mRNA
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	PMD domain-containing protein
Location	chr01: 10237070 .. 10238393 (+)
Sequence length	764
RNA-Seq Expression	MELO3C024966.jh1.t1
Synteny	MELO3C024966.jh1.t1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCTGTCAATATCGTTTCCAGGCGTATTATTCAATAGTTTGTATGCAGAGGAAGGATCACACGACATCCTCTAAGAATGACTCCCAAGTGACTATTAGCTCCTGGATTTCATTTTGGTACCTTGGGTCTAGAAGCTATGATAAGCCAACCACACGGAAACAAAAGAAGGCGTCGCGCTCCAAATCTTCTCAAAACCCTTATGGTTCGAAGATCCAAACTTGTGAATGGTCCTTTAGGGAGAACATGTTATTTGCAGAACTTGGAATCAGGGATGATCTGAAGGATGGAACGTATTTAGTTGCCTTATTATCTTGCTGGTTGTGCCTTTTCGTATTTCTACATAAAGGATTATTTCTTCGCCCTAGAGTATTTAGGGCTGCAAGCTTAATGACCACTGTCACTATTTATAGTCTTGCAGTTTCAGTTTTGGCGAACATATATCATGGGCTAGGTTTGATAACCAAAGCCTCCAATCCGATAGGACATATGGACTTTCACTTTTTCATGCATTACGTCCATGGCTTGTTAGCCCATTATTTTGGCACGCATTATCCACTTCCCACAGAAGTTTGAGGCCCTAAGATGACTAACTTTTTTGACGAAGGCGGGTCTATTTATTTTGGAGAATATGAGGTGGAGAATTGAGCCATAATGGTGCAAGAATTCAGTGGCACGCTAACCTCCAGAATAGGAATAAACATAAACGCATGGTTGATACCAATGATTCATCATTTTTACAGACTTCTTATTTCGTGAGCATACATTCCTGCTACTTGTCCTCTCGCTGTGGAAATACCTAGATCATAACATCATACAGTCTGTATCGATTTTGACGATATTTTGACTTTTACCAGAATATCCCTAATGATATAGGGGGCATGCCACCTGCGATCACACTTGATAATATATTATATCACTAGAGAATATGTATGAGGTGTAACACTTTATCTAAGTTATACTTGTCCGCTCGTTCGTAAGAGTCTTGCAAGCATGCGACACAGTGATTTATAGACTGGTGGGCCACGAGGCACATGACCTATTTTAAGGATAATAGACACCATTTTATGAGTAGTGCCATTCCTCCCCCTTCACAGTCTAAGCTACCCAAGAACCGAGGGAACAACCTGAGTGGTAAAGAAATTCGCTCGGTTGAGGCGATGGTTACTACTCTCGAGGAGGAGATAAAGGAGCATAAAGATGAGAGCGATAGCAGCAAAAGTGATCATCATTGGAAGAGACCTTTGAAGAAAGCGAAGGTATCTGGTGATGATCCCGGCGGAAAGAGTTCAAGTGCTTTGGGAGTCCCTGATGTTCCATCACT

mRNA sequence

ATGACCTGTCAATATCGTTTCCAGGCGTATTATTCAATAGTTTGTATGCAGAGGAAGGATCACACGACATCCTCTAAGAATGACTCCCAAGTGACTATTAGCTCCTGGATTTCATTTTGGTACCTTGGGTCTAGAAGCTATGATAAGCCAACCACACGGAAACAAAAGAAGGCGTCGCGCTCCAAATCTTCTCAAAACCCTTATGGTTCGAAGATCCAAACTTGTGAATGGTCCTTTAGGGAGAACATGTTATTTGCAGAACTTGGAATCAGGGATGATCTGAAGGATGGAACGTATTTAGTTGCCTTATTATCTTGCTGGTTGTGCCTTTTCGTATTTCTACATAAAGGATTATTTCTTCGCCCTAGAGTATTTAGGGCTGCAAGCTTAATGACCACTGTCACTATTTATAGTCTTGCAGTTTCAGTTTTGGCGAACATATATCATGGGCTAGACTGGTGGGCCACGAGGCACATGACCTATTTTAAGGATAATAGACACCATTTTATGAGTAGTGCCATTCCTCCCCCTTCACAGTCTAAGCTACCCAAGAACCGAGGGAACAACCTGAGTGGTAAAGAAATTCGCTCGGTTGAGGCGATGGTTACTACTCTCGAGGAGGAGATAAAGGAGCATAAAGATGAGAGCGATAGCAGCAAAAGTGATCATCATTGGAAGAGACCTTTGAAGAAAGCGAAGGTATCTGGTGATGATCCCGGCGGAAAGAGTTCAAGTGCTTTGGGAGTCCCTGATGTTCCATCACT

Coding sequence (CDS)

ATGACCTGTCAATATCGTTTCCAGGCGTATTATTCAATAGTTTGTATGCAGAGGAAGGATCACACGACATCCTCTAAGAATGACTCCCAAGTGACTATTAGCTCCTGGATTTCATTTTGGTACCTTGGGTCTAGAAGCTATGATAAGCCAACCACACGGAAACAAAAGAAGGCGTCGCGCTCCAAATCTTCTCAAAACCCTTATGGTTCGAAGATCCAAACTTGTGAATGGTCCTTTAGGGAGAACATGTTATTTGCAGAACTTGGAATCAGGGATGATCTGAAGGATGGAACGTATTTAGTTGCCTTATTATCTTGCTGGTTGTGCCTTTTCGTATTTCTACATAAAGGATTATTTCTTCGCCCTAGAGTATTTAGGGCTGCAAGCTTAATGACCACTGTCACTATTTATAGTCTTGCAGTTTCAGTTTTGGCGAACATATATCATGGGCTAGACTGGTGGGCCACGAGGCACATGACCTATTTTAAGGATAATAGACACCATTTTATGAGTAGTGCCATTCCTCCCCCTTCACAGTCTAAGCTACCCAAGAACCGAGGGAACAACCTGAGTGGTAAAGAAATTCGCTCGGTTGAGGCGATGGTTACTACTCTCGAGGAGGAGATAAAGGAGCATAAAGATGAGAGCGATAGCAGCAAAAGTGATCATCATTGGAAGAGACCTTTGAAGAAAGCGAAGGTATCTGGTGATGATCCCGGCGGAAAGAGTTCAAGTGCTTTGGGAGTCCCTGATGTTCCATCA

Protein sequence

MTCQYRFQAYYSIVCMQRKDHTTSSKNDSQVTISSWISFWYLGSRSYDKPTTRKQKKASRSKSSQNPYGSKIQTCEWSFRENMLFAELGIRDDLKDGTYLVALLSCWLCLFVFLHKGLFLRPRVFRAASLMTTVTIYSLAVSVLANIYHGLDWWATRHMTYFKDNRHHFMSSAIPPPSQSKLPKNRGNNLSGKEIRSVEAMVTTLEEEIKEHKDESDSSKSDHHWKRPLKKAKVSGDDPGGKSSSALGVPDVPS

Homology

[Close]

BLAST of MELO3C024966.jh1.t1 vs. NCBI nr
Match: KAA0055892.1 (hypothetical protein E6C27_scaffold438G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 391 bits (1005), Expect = 1.76e-128
Identity = 197/253 (77.87%), Postives = 211/253 (83.40%), Query Frame = 0


Query: 1   MTCQYRFQAYYSIVCMQRKDHTTSSKNDSQVTISSWISFWYLGSRSYDKPTTRKQKKASR 60
           MT QY FQAYYSIVC QR D +TSSKNDSQVTI SWISFWYLGSRSYDKPTTRK+KK SR
Sbjct: 202 MTYQYLFQAYYSIVCTQRNDRSTSSKNDSQVTIGSWISFWYLGSRSYDKPTTRKKKKVSR 261

Query: 61  SKSSQNPYGSKIQTCEWSFRENMLFAELGIRDDLKDGTYLVALLSCWLCLFVFLHKGLFL 120
           SKS+QN  GSKIQ  EWS RE+MLF EL I+DDLKD TYL A LSCWLCLFVF  KG FL
Sbjct: 262 SKSTQNSDGSKIQAREWSSRESMLFVELRIKDDLKDETYLAAFLSCWLCLFVFPQKGSFL 321

Query: 121 RPRVFRAASLMTTVTIYSLAVSVLANIYHGLDWWATRHMTYFKDNRHHFMSSAIPPPSQS 180
           R  VFRAASLM   TIYSLAV V ANIYHGLDWW T+H+TYF+DNRHH +SS IPPPSQ 
Sbjct: 322 RLGVFRAASLMAAGTIYSLAVPVFANIYHGLDWWTTKHVTYFEDNRHHLVSSVIPPPSQP 381

Query: 181 KLPKNRGNNLSGKEIRSVEAMVTTLEEEIKEHKDESDSSKSDHHWKRPLKKAKVSGDDPG 240
           +LPKNRG+NL GKEIR VEAM   LEEE+K+HKDESDSSKSD HWKRPLKKAKVSGD P 
Sbjct: 382 RLPKNRGSNLGGKEIRLVEAMAPNLEEEVKKHKDESDSSKSDRHWKRPLKKAKVSGDHPD 441

Query: 241 GKSSSALGVPDVP 253
           G+  SAL VPDVP
Sbjct: 442 GRGLSALEVPDVP 454

[Close]

BLAST of MELO3C024966.jh1.t1 vs. NCBI nr
Match: TYK06200.1 (hypothetical protein E5676_scaffold287G00580 [Cucumis melo var. makuwa])

HSP 1 Score: 389 bits (999), Expect = 1.43e-127
Identity = 195/253 (77.08%), Postives = 210/253 (83.00%), Query Frame = 0


Query: 1   MTCQYRFQAYYSIVCMQRKDHTTSSKNDSQVTISSWISFWYLGSRSYDKPTTRKQKKASR 60
           MT QY FQAYYSIVC QR D +TSSKNDSQVTI SWISFWYLGSRSYDKPTTRKQKK SR
Sbjct: 206 MTYQYLFQAYYSIVCTQRNDRSTSSKNDSQVTIGSWISFWYLGSRSYDKPTTRKQKKVSR 265

Query: 61  SKSSQNPYGSKIQTCEWSFRENMLFAELGIRDDLKDGTYLVALLSCWLCLFVFLHKGLFL 120
           SKS++NP  SKIQ  EWS RE+MLF EL I+DDLKD TYL A LSCWLCLFVF  KG F+
Sbjct: 266 SKSTENPDDSKIQAREWSSRESMLFVELRIKDDLKDETYLAAFLSCWLCLFVFPQKGSFI 325

Query: 121 RPRVFRAASLMTTVTIYSLAVSVLANIYHGLDWWATRHMTYFKDNRHHFMSSAIPPPSQS 180
           RP VFRAASLM    IYSLAV V ANIYHGLDWW T+H+TYF+DNRHH +SS IP PSQ 
Sbjct: 326 RPGVFRAASLMAAGIIYSLAVPVFANIYHGLDWWTTKHVTYFEDNRHHLVSSVIPLPSQP 385

Query: 181 KLPKNRGNNLSGKEIRSVEAMVTTLEEEIKEHKDESDSSKSDHHWKRPLKKAKVSGDDPG 240
           +LPKNRG+NL GKEIR VEAM   LEEE+K+HKDESDSSKSD HWKRPLKKAKVSGD P 
Sbjct: 386 RLPKNRGSNLGGKEIRLVEAMAPNLEEEVKKHKDESDSSKSDRHWKRPLKKAKVSGDHPD 445

Query: 241 GKSSSALGVPDVP 253
           G+  SAL VPDVP
Sbjct: 446 GRGLSALEVPDVP 458

[Close]

BLAST of MELO3C024966.jh1.t1 vs. NCBI nr
Match: KAA0050333.1 (hypothetical protein E6C27_scaffold88G00590 [Cucumis melo var. makuwa])

HSP 1 Score: 339 bits (870), Expect = 2.72e-109
Identity = 197/333 (59.16%), Postives = 207/333 (62.16%), Query Frame = 0


Query: 2   TCQYRFQAYYSIVCMQRKDHTTSSKNDSQVTISSWISFWYLGSRSYDKPTTRKQKKASRS 61
           T QY FQ YYSIVC QR D + SSKNDSQVTI SWISFWYLGSRSYDKPTTRKQKKASRS
Sbjct: 73  TYQYLFQTYYSIVCTQRNDRSASSKNDSQVTIGSWISFWYLGSRSYDKPTTRKQKKASRS 132

Query: 62  KSSQNPYGSKIQTCEWSFRENMLFAELGIRDDLKDGTYLVALLSCWLCLFVFLHKGLFLR 121
           KS+QNP GSKIQ  EWS RE+MLFAELG+RDDLKD TYL A LS WL LFVF HKG FLR
Sbjct: 133 KSTQNPDGSKIQAHEWSSRESMLFAELGVRDDLKDETYLAAFLSYWLFLFVFPHKGSFLR 192

Query: 122 PRVFRAASLMTTVTIYSLAVSVLANIYHGL------------------------------ 181
           P VFR ASLM T TIYSLAV VLANIYHGL                              
Sbjct: 193 PEVFRVASLMATGTIYSLAVPVLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWLAHYF 252

Query: 182 ------------------------------------------DWWAT---------RHMT 241
                                                      W A           H T
Sbjct: 253 GTHYPLPTEVRGPKMTNFSGEGGSIYFGEYEARELIHNGARIQWHANLQNRNKHERMHGT 312

Query: 242 YFKDNRHHFMSSAIPPPSQSKLPKNRGNNLSGKEIRSVEAMVTTLEEEIKEHKDESDSSK 253
           YF+DNRHH +SSAIPPPSQ +L KNRG+NL GKEIR VEAM   LEEE+KEH  ESDSSK
Sbjct: 313 YFEDNRHHLVSSAIPPPSQPRLLKNRGSNLGGKEIRLVEAMAPNLEEEVKEH--ESDSSK 372

[Close]

BLAST of MELO3C024966.jh1.t1 vs. NCBI nr
Match: KAA0052363.1 (hypothetical protein E6C27_scaffold207G002060 [Cucumis melo var. makuwa])

HSP 1 Score: 343 bits (880), Expect = 4.62e-109
Identity = 190/314 (60.51%), Postives = 204/314 (64.97%), Query Frame = 0


Query: 9   AYYSIVCMQRKDHTTSSKNDSQVTISSWISFWYLGSRSYDKPTTRKQKKASRSKSSQNPY 68
           AYYSIVC QR D + SSKNDSQVTI SWISFWYLGS+SYDKPTTRKQKKASRSKS+QNP 
Sbjct: 193 AYYSIVCTQRNDRSASSKNDSQVTIGSWISFWYLGSKSYDKPTTRKQKKASRSKSTQNPN 252

Query: 69  GSKIQTCEWSFRENMLFAELGIRDDLKDGTYLVALLSCWLCLFVFLHKGLFLRPRVFRAA 128
           GSKIQ  EWS RE+MLFAELGIRDDLKD TYL A LSCWLCLFVF  KG FLRP VFR A
Sbjct: 253 GSKIQAREWSSRESMLFAELGIRDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRVA 312

Query: 129 SLMTTVTIYSLAVSVLANIYHGLD------------------------------------ 188
           SLM   TIYSLAV VLANIYHGL                                     
Sbjct: 313 SLMAAGTIYSLAVPVLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWNKHERMVDTHDS 372

Query: 189 ---------------------------------WWATRHMTYFKDNRHHFMSSAIPPPSQ 248
                                            WW T+H TYF+DNRH+ +SSAIP PSQ
Sbjct: 373 SFLQMSYFDLPNDIGGMPPAITLDNILYHWRIYWWTTKHGTYFEDNRHYLVSSAIPRPSQ 432

Query: 249 SKLPKNRGNNLSGKEIRSVEAMVTTLEEEIKEHKDESDSSKSDHHWKRPLKKAKVSGDDP 253
            +LPKNRG+NL GKEIR VEAM   LE+E+ EH  ESDS+KSD HWKRPLKKAKVSGD P
Sbjct: 433 PRLPKNRGSNLGGKEIRLVEAMAPNLEDEVNEH--ESDSNKSDRHWKRPLKKAKVSGDHP 492

[Close]

BLAST of MELO3C024966.jh1.t1 vs. NCBI nr
Match: KAA0057575.1 (hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 328 bits (842), Expect = 3.11e-107
Identity = 197/405 (48.64%), Postives = 210/405 (51.85%), Query Frame = 0


Query: 2   TCQYRFQAYYSIVCMQRKDHTTSSKNDSQVTISSWISFWYLGSRSYDKPTTRKQKKASRS 61
           TCQY FQAYYSIVC QR D + SSKNDSQVTI SWISFWYLGS+SYDKP TRKQKKASRS
Sbjct: 49  TCQYLFQAYYSIVCTQRNDRSASSKNDSQVTIGSWISFWYLGSKSYDKPKTRKQKKASRS 108

Query: 62  KSSQNPYGSKIQTCEWSFRENMLFAELGIRDDLKDGTYLVALLSCWLCLFVFLHKGLFLR 121
           KS+QNP GSKIQ  EWS RE+MLFAELGIRDDLKD TYL A LSCWLCLFVF  KG FLR
Sbjct: 109 KSTQNPDGSKIQAREWSSRESMLFAELGIRDDLKDETYLAAFLSCWLCLFVFPKKGSFLR 168

Query: 122 PRVFRAASLMTTVTIYSLAVSVLANIYHGL------------------------------ 181
           P VFR ASLM   TIYSLAV VLANIYHGL                              
Sbjct: 169 PEVFRVASLMVAGTIYSLAVPVLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWLAHYF 228

Query: 182 ------------------------------------------------------------ 241
                                                                       
Sbjct: 229 GTHYPLPREVRGPKMTNFSGEGGSIYFGKYEAHELIHNGARIQWHANLHNRNKHERMVDT 288

Query: 242 ------------------------------------------------------------ 253
                                                                       
Sbjct: 289 HDSSFLQMSYFDLPNDIGGMPPAITLDNILYHWRICMRRNTLSELYLPARSLEPCKHVTQ 348

[Close]

BLAST of MELO3C024966.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7UJ48 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold438G00100 PE=4 SV=1)

HSP 1 Score: 391 bits (1005), Expect = 8.52e-129
Identity = 197/253 (77.87%), Postives = 211/253 (83.40%), Query Frame = 0


Query: 1   MTCQYRFQAYYSIVCMQRKDHTTSSKNDSQVTISSWISFWYLGSRSYDKPTTRKQKKASR 60
           MT QY FQAYYSIVC QR D +TSSKNDSQVTI SWISFWYLGSRSYDKPTTRK+KK SR
Sbjct: 202 MTYQYLFQAYYSIVCTQRNDRSTSSKNDSQVTIGSWISFWYLGSRSYDKPTTRKKKKVSR 261

Query: 61  SKSSQNPYGSKIQTCEWSFRENMLFAELGIRDDLKDGTYLVALLSCWLCLFVFLHKGLFL 120
           SKS+QN  GSKIQ  EWS RE+MLF EL I+DDLKD TYL A LSCWLCLFVF  KG FL
Sbjct: 262 SKSTQNSDGSKIQAREWSSRESMLFVELRIKDDLKDETYLAAFLSCWLCLFVFPQKGSFL 321

Query: 121 RPRVFRAASLMTTVTIYSLAVSVLANIYHGLDWWATRHMTYFKDNRHHFMSSAIPPPSQS 180
           R  VFRAASLM   TIYSLAV V ANIYHGLDWW T+H+TYF+DNRHH +SS IPPPSQ 
Sbjct: 322 RLGVFRAASLMAAGTIYSLAVPVFANIYHGLDWWTTKHVTYFEDNRHHLVSSVIPPPSQP 381

Query: 181 KLPKNRGNNLSGKEIRSVEAMVTTLEEEIKEHKDESDSSKSDHHWKRPLKKAKVSGDDPG 240
           +LPKNRG+NL GKEIR VEAM   LEEE+K+HKDESDSSKSD HWKRPLKKAKVSGD P 
Sbjct: 382 RLPKNRGSNLGGKEIRLVEAMAPNLEEEVKKHKDESDSSKSDRHWKRPLKKAKVSGDHPD 441

Query: 241 GKSSSALGVPDVP 253
           G+  SAL VPDVP
Sbjct: 442 GRGLSALEVPDVP 454

[Close]

BLAST of MELO3C024966.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5D3C4E5 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00580 PE=4 SV=1)

HSP 1 Score: 389 bits (999), Expect = 6.94e-128
Identity = 195/253 (77.08%), Postives = 210/253 (83.00%), Query Frame = 0


Query: 1   MTCQYRFQAYYSIVCMQRKDHTTSSKNDSQVTISSWISFWYLGSRSYDKPTTRKQKKASR 60
           MT QY FQAYYSIVC QR D +TSSKNDSQVTI SWISFWYLGSRSYDKPTTRKQKK SR
Sbjct: 206 MTYQYLFQAYYSIVCTQRNDRSTSSKNDSQVTIGSWISFWYLGSRSYDKPTTRKQKKVSR 265

Query: 61  SKSSQNPYGSKIQTCEWSFRENMLFAELGIRDDLKDGTYLVALLSCWLCLFVFLHKGLFL 120
           SKS++NP  SKIQ  EWS RE+MLF EL I+DDLKD TYL A LSCWLCLFVF  KG F+
Sbjct: 266 SKSTENPDDSKIQAREWSSRESMLFVELRIKDDLKDETYLAAFLSCWLCLFVFPQKGSFI 325

Query: 121 RPRVFRAASLMTTVTIYSLAVSVLANIYHGLDWWATRHMTYFKDNRHHFMSSAIPPPSQS 180
           RP VFRAASLM    IYSLAV V ANIYHGLDWW T+H+TYF+DNRHH +SS IP PSQ 
Sbjct: 326 RPGVFRAASLMAAGIIYSLAVPVFANIYHGLDWWTTKHVTYFEDNRHHLVSSVIPLPSQP 385

Query: 181 KLPKNRGNNLSGKEIRSVEAMVTTLEEEIKEHKDESDSSKSDHHWKRPLKKAKVSGDDPG 240
           +LPKNRG+NL GKEIR VEAM   LEEE+K+HKDESDSSKSD HWKRPLKKAKVSGD P 
Sbjct: 386 RLPKNRGSNLGGKEIRLVEAMAPNLEEEVKKHKDESDSSKSDRHWKRPLKKAKVSGDHPD 445

Query: 241 GKSSSALGVPDVP 253
           G+  SAL VPDVP
Sbjct: 446 GRGLSALEVPDVP 458

[Close]

BLAST of MELO3C024966.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7U349 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold88G00590 PE=4 SV=1)

HSP 1 Score: 339 bits (870), Expect = 1.31e-109
Identity = 197/333 (59.16%), Postives = 207/333 (62.16%), Query Frame = 0


Query: 2   TCQYRFQAYYSIVCMQRKDHTTSSKNDSQVTISSWISFWYLGSRSYDKPTTRKQKKASRS 61
           T QY FQ YYSIVC QR D + SSKNDSQVTI SWISFWYLGSRSYDKPTTRKQKKASRS
Sbjct: 73  TYQYLFQTYYSIVCTQRNDRSASSKNDSQVTIGSWISFWYLGSRSYDKPTTRKQKKASRS 132

Query: 62  KSSQNPYGSKIQTCEWSFRENMLFAELGIRDDLKDGTYLVALLSCWLCLFVFLHKGLFLR 121
           KS+QNP GSKIQ  EWS RE+MLFAELG+RDDLKD TYL A LS WL LFVF HKG FLR
Sbjct: 133 KSTQNPDGSKIQAHEWSSRESMLFAELGVRDDLKDETYLAAFLSYWLFLFVFPHKGSFLR 192

Query: 122 PRVFRAASLMTTVTIYSLAVSVLANIYHGL------------------------------ 181
           P VFR ASLM T TIYSLAV VLANIYHGL                              
Sbjct: 193 PEVFRVASLMATGTIYSLAVPVLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWLAHYF 252

Query: 182 ------------------------------------------DWWAT---------RHMT 241
                                                      W A           H T
Sbjct: 253 GTHYPLPTEVRGPKMTNFSGEGGSIYFGEYEARELIHNGARIQWHANLQNRNKHERMHGT 312

Query: 242 YFKDNRHHFMSSAIPPPSQSKLPKNRGNNLSGKEIRSVEAMVTTLEEEIKEHKDESDSSK 253
           YF+DNRHH +SSAIPPPSQ +L KNRG+NL GKEIR VEAM   LEEE+KEH  ESDSSK
Sbjct: 313 YFEDNRHHLVSSAIPPPSQPRLLKNRGSNLGGKEIRLVEAMAPNLEEEVKEH--ESDSSK 372

[Close]

BLAST of MELO3C024966.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7U8X8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G002060 PE=4 SV=1)

HSP 1 Score: 343 bits (880), Expect = 2.24e-109
Identity = 190/314 (60.51%), Postives = 204/314 (64.97%), Query Frame = 0


Query: 9   AYYSIVCMQRKDHTTSSKNDSQVTISSWISFWYLGSRSYDKPTTRKQKKASRSKSSQNPY 68
           AYYSIVC QR D + SSKNDSQVTI SWISFWYLGS+SYDKPTTRKQKKASRSKS+QNP 
Sbjct: 193 AYYSIVCTQRNDRSASSKNDSQVTIGSWISFWYLGSKSYDKPTTRKQKKASRSKSTQNPN 252

Query: 69  GSKIQTCEWSFRENMLFAELGIRDDLKDGTYLVALLSCWLCLFVFLHKGLFLRPRVFRAA 128
           GSKIQ  EWS RE+MLFAELGIRDDLKD TYL A LSCWLCLFVF  KG FLRP VFR A
Sbjct: 253 GSKIQAREWSSRESMLFAELGIRDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRVA 312

Query: 129 SLMTTVTIYSLAVSVLANIYHGLD------------------------------------ 188
           SLM   TIYSLAV VLANIYHGL                                     
Sbjct: 313 SLMAAGTIYSLAVPVLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWNKHERMVDTHDS 372

Query: 189 ---------------------------------WWATRHMTYFKDNRHHFMSSAIPPPSQ 248
                                            WW T+H TYF+DNRH+ +SSAIP PSQ
Sbjct: 373 SFLQMSYFDLPNDIGGMPPAITLDNILYHWRIYWWTTKHGTYFEDNRHYLVSSAIPRPSQ 432

Query: 249 SKLPKNRGNNLSGKEIRSVEAMVTTLEEEIKEHKDESDSSKSDHHWKRPLKKAKVSGDDP 253
            +LPKNRG+NL GKEIR VEAM   LE+E+ EH  ESDS+KSD HWKRPLKKAKVSGD P
Sbjct: 433 PRLPKNRGSNLGGKEIRLVEAMAPNLEDEVNEH--ESDSNKSDRHWKRPLKKAKVSGDHP 492

[Close]

BLAST of MELO3C024966.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7UVI5 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00470 PE=4 SV=1)

HSP 1 Score: 328 bits (842), Expect = 1.51e-107
Identity = 197/405 (48.64%), Postives = 210/405 (51.85%), Query Frame = 0


Query: 2   TCQYRFQAYYSIVCMQRKDHTTSSKNDSQVTISSWISFWYLGSRSYDKPTTRKQKKASRS 61
           TCQY FQAYYSIVC QR D + SSKNDSQVTI SWISFWYLGS+SYDKP TRKQKKASRS
Sbjct: 49  TCQYLFQAYYSIVCTQRNDRSASSKNDSQVTIGSWISFWYLGSKSYDKPKTRKQKKASRS 108

Query: 62  KSSQNPYGSKIQTCEWSFRENMLFAELGIRDDLKDGTYLVALLSCWLCLFVFLHKGLFLR 121
           KS+QNP GSKIQ  EWS RE+MLFAELGIRDDLKD TYL A LSCWLCLFVF  KG FLR
Sbjct: 109 KSTQNPDGSKIQAREWSSRESMLFAELGIRDDLKDETYLAAFLSCWLCLFVFPKKGSFLR 168

Query: 122 PRVFRAASLMTTVTIYSLAVSVLANIYHGL------------------------------ 181
           P VFR ASLM   TIYSLAV VLANIYHGL                              
Sbjct: 169 PEVFRVASLMVAGTIYSLAVPVLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWLAHYF 228

Query: 182 ------------------------------------------------------------ 241
                                                                       
Sbjct: 229 GTHYPLPREVRGPKMTNFSGEGGSIYFGKYEAHELIHNGARIQWHANLHNRNKHERMVDT 288

Query: 242 ------------------------------------------------------------ 253
                                                                       
Sbjct: 289 HDSSFLQMSYFDLPNDIGGMPPAITLDNILYHWRICMRRNTLSELYLPARSLEPCKHVTQ 348

The following BLAST results are available for this feature:

BLAST of MELO3C024966.jh1.t1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055892.1	1.76e-128	77.87	hypothetical protein E6C27_scaffold438G00100 [Cucumis melo var. makuwa]	[more]
TYK06200.1	1.43e-127	77.08	hypothetical protein E5676_scaffold287G00580 [Cucumis melo var. makuwa]	[more]
KAA0050333.1	2.72e-109	59.16	hypothetical protein E6C27_scaffold88G00590 [Cucumis melo var. makuwa]	[more]
KAA0052363.1	4.62e-109	60.51	hypothetical protein E6C27_scaffold207G002060 [Cucumis melo var. makuwa]	[more]
KAA0057575.1	3.11e-107	48.64	hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C024966.jh1.t1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C024966.jh1.t1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UJ48	8.52e-129	77.87	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3C4E5	6.94e-128	77.08	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7U349	1.31e-109	59.16	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7U8X8	2.24e-109	60.51	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7UVI5	1.51e-107	48.64	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of MELO3C024966.jh1.t1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 195..222
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 206..224
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 206..254
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..69
None	No IPR available	PANTHER	PTHR36607	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 22..153
None	No IPR available	PANTHER	PTHR36607:SF19	SUBFAMILY NOT NAMED	coord: 22..153

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C024966.jh1	MELO3C024966.jh1	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C024966.jh1.t1.exon	MELO3C024966.jh1.t1.exon	exon
MELO3C024966.jh1.t1.exon	MELO3C024966.jh1.t1.exon_2	exon

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C024966.jh1.t1.start_codon	MELO3C024966.jh1.t1.start_codon	start_codon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C024966.jh1.t1.cds	MELO3C024966.jh1.t1.cds	CDS
MELO3C024966.jh1.t1.cds	MELO3C024966.jh1.t1.cds_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C024966.jh1.t1	MELO3C024966.jh1.t1-protein	polypeptide