MELO3C022393.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C022393.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Photosystem II reaction center Psb28 protein
Location	chr11: 30889376 .. 30890231 (+)
Sequence length	856
RNA-Seq Expression	MELO3C022393.1
Synteny	MELO3C022393.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGTGAATGAATGGCTGTGGTGATTACACACACACCTTCCCTCAATCTTCTTCACAAACCACACCATTCTCCCTTTTTCATCATCTTCTTCTTCATTCTTCCCCTGTTTTCAATTCTCAACAAAATCAATGGCGTCTCTTCAATCTCTGGCCTCCACTACTTCCCCTTCTTCTCCTCATCTCCTTCATCCTTCTTCCACCAAACTTAGACTCTCTTATTCTCTCCACAGCAGCGCCTTCTCCTCATTCCACGGCCGCTCTCTTTCCCTCTCCACTACCAAATGCCACACACTCACTCGCCGCACTTACCGACAACGTCCATGGAACCCCATCCTCATGGTTCAGCCCAAGATTCAGTTCATCCAGGGCACGGACGAGCAGACAGTGCCGGATGTGCGGCTCACGAAGTCCCGAGACGGAACCAACGGAATGGCGATTTTCAGGTTCGATCAGCCGTCAGTGTTCGATTCATCGGCGGAGGTTGGGGATATCACCGGATTCTACATGATTGATGAAGAAGGGGTGATTCAATCGGTTGATGTGAATGCGAAGTTCATCAATGGGAAACCGGCGGGGATTGAGGCGAAGTATGTGATGAGAACCCCGAGGGAATGGGATAGATTCATGAGATTCATGGAGCGATACTCCAATGCCAATGGCTTGCAATTTGTCAAGAAATGAAATCAGGTTCTTTTTTTCTTTCTTTGCCCAATTTTGTTTTTGCGTTTGAAAATGAAGATCAATACTGTGTTTGATTTATGGCTGATGGATGAAGATTTAATTGATGCTTTGTTCTATGTTCTTTCTATCCTCTCTCAACTAATTCTTGTACGCTGGTAGGGCAATTTGTAATAAC

mRNA sequence

AAAGTGAATGAATGGCTGTGGTGATTACACACACACCTTCCCTCAATCTTCTTCACAAACCACACCATTCTCCCTTTTTCATCATCTTCTTCTTCATTCTTCCCCTGTTTTCAATTCTCAACAAAATCAATGGCGTCTCTTCAATCTCTGGCCTCCACTACTTCCCCTTCTTCTCCTCATCTCCTTCATCCTTCTTCCACCAAACTTAGACTCTCTTATTCTCTCCACAGCAGCGCCTTCTCCTCATTCCACGGCCGCTCTCTTTCCCTCTCCACTACCAAATGCCACACACTCACTCGCCGCACTTACCGACAACGTCCATGGAACCCCATCCTCATGGTTCAGCCCAAGATTCAGTTCATCCAGGGCACGGACGAGCAGACAGTGCCGGATGTGCGGCTCACGAAGTCCCGAGACGGAACCAACGGAATGGCGATTTTCAGGTTCGATCAGCCGTCAGTGTTCGATTCATCGGCGGAGGTTGGGGATATCACCGGATTCTACATGATTGATGAAGAAGGGGTGATTCAATCGGTTGATGTGAATGCGAAGTTCATCAATGGGAAACCGGCGGGGATTGAGGCGAAGTATGTGATGAGAACCCCGAGGGAATGGGATAGATTCATGAGATTCATGGAGCGATACTCCAATGCCAATGGCTTGCAATTTGTCAAGAAATGAAATCAGGTTCTTTTTTTCTTTCTTTGCCCAATTTTGTTTTTGCGTTTGAAAATGAAGATCAATACTGTGTTTGATTTATGGCTGATGGATGAAGATTTAATTGATGCTTTGTTCTATGTTCTTTCTATCCTCTCTCAACTAATTCTTGTACGCTGGTAGGGCAATTTGTAATAAC

Coding sequence (CDS)

ATGGCGTCTCTTCAATCTCTGGCCTCCACTACTTCCCCTTCTTCTCCTCATCTCCTTCATCCTTCTTCCACCAAACTTAGACTCTCTTATTCTCTCCACAGCAGCGCCTTCTCCTCATTCCACGGCCGCTCTCTTTCCCTCTCCACTACCAAATGCCACACACTCACTCGCCGCACTTACCGACAACGTCCATGGAACCCCATCCTCATGGTTCAGCCCAAGATTCAGTTCATCCAGGGCACGGACGAGCAGACAGTGCCGGATGTGCGGCTCACGAAGTCCCGAGACGGAACCAACGGAATGGCGATTTTCAGGTTCGATCAGCCGTCAGTGTTCGATTCATCGGCGGAGGTTGGGGATATCACCGGATTCTACATGATTGATGAAGAAGGGGTGATTCAATCGGTTGATGTGAATGCGAAGTTCATCAATGGGAAACCGGCGGGGATTGAGGCGAAGTATGTGATGAGAACCCCGAGGGAATGGGATAGATTCATGAGATTCATGGAGCGATACTCCAATGCCAATGGCTTGCAATTTGTCAAGAAATGA

Protein sequence

MASLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTYRQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKK

Homology

[Close]

BLAST of MELO3C022393.1 vs. ExPASy Swiss-Prot
Match: Q0JG75 (Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PSB28 PE=2 SV=2)

HSP 1 Score: 216.5 bits (550), Expect = 2.6e-55
Identity = 123/188 (65.43%), Postives = 141/188 (75.00%), Query Frame = 0


Query: 1   MASLQSLASTTSPSSPHLLH---PSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTR 60
           MA++    +  SP S        P+ +    S SLH    SSF G SL    TK  +L  
Sbjct: 1   MAAVMKALAVASPISARAQPRRCPAGSSGGPSQSLH----SSFGGVSLQCRRTKPASL-- 60

Query: 61  RTYRQRPWNPILMV--QPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSS 120
             +R RP   ++M+  +P IQFIQGTDEQT+PDVRLTKSRDGTNG+AIF FDQPSVFDSS
Sbjct: 61  --HRSRPSMQVVMMAARPAIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFDQPSVFDSS 120

Query: 121 AEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 180
           AE+GDITGFYMID+EGV+QSVDV+AKF+NGKPA IEAKYVMRTPREWDRFMRFMERYS A
Sbjct: 121 AELGDITGFYMIDDEGVLQSVDVSAKFVNGKPALIEAKYVMRTPREWDRFMRFMERYSQA 180

Query: 181 NGLQFVKK 184
           NGLQFVKK
Sbjct: 181 NGLQFVKK 180

[Close]

BLAST of MELO3C022393.1 vs. ExPASy Swiss-Prot
Match: Q8W0Y8 (Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB28 PE=2 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.9e-51
Identity = 110/186 (59.14%), Postives = 136/186 (73.12%), Query Frame = 0


Query: 1   MASLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60
           MA ++S+ S TS +      P S  +  S S+     SSF G  +SL   +  + T    
Sbjct: 1   MACVRSIGSLTSVNHSQRNVPRSGIVLSSCSVLPIKSSSFTGSPVSLPRAQPSSRT---- 60

Query: 61  RQRPWNPI---LMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAE 120
             RP  P+   +MV+P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F FDQPSVFDSS E
Sbjct: 61  ALRPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGE 120

Query: 121 VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 180
           VG+ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR+P+EWDRFMRFMERYS+ NG
Sbjct: 121 VGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQNG 180

Query: 181 LQFVKK 184
           LQFVKK
Sbjct: 181 LQFVKK 182

[Close]

BLAST of MELO3C022393.1 vs. ExPASy Swiss-Prot
Match: P49508 (Photosystem II reaction center Psb28 protein OS=Trieres chinensis OX=1514140 GN=psb28 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 5.0e-35
Identity = 67/113 (59.29%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 71  VQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFD-SSAEVGDITGFYMIDE 130
           ++ KIQFI+G DE+ +PDVRLT+SRDG+ G A FRF  P++ D S+A+ G+ITG Y+ID+
Sbjct: 1   MEAKIQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDQ 60

Query: 131 EGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 183
           EG +++ DVNA+FINGKP  IE+ Y+M++P  WDRFMRFMERY  +NGL F K
Sbjct: 61  EGTLETRDVNAQFINGKPEAIESIYIMKSPEAWDRFMRFMERYGESNGLVFTK 113

[Close]

BLAST of MELO3C022393.1 vs. ExPASy Swiss-Prot
Match: A0T0H5 (Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strain CCAP 1055/1) OX=556484 GN=psb28 PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.1e-34
Identity = 65/113 (57.52%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 71  VQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFD-SSAEVGDITGFYMIDE 130
           ++ KIQFI+G DE+ +PDVRLT+S+DG+ G A FRF  P++ D ++A+ G+ITG Y+IDE
Sbjct: 1   MEAKIQFIKGLDEKVLPDVRLTRSKDGSTGTATFRFKNPNILDKTTAKEGEITGMYLIDE 60

Query: 131 EGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 183
           EG++++ DVNA+F+NGKP  IE+ Y+M++P  WDRFMRFMERY   NGL F K
Sbjct: 61  EGILETRDVNARFVNGKPEAIESIYIMKSPEAWDRFMRFMERYGETNGLVFSK 113

[Close]

BLAST of MELO3C022393.1 vs. ExPASy Swiss-Prot
Match: O78418 (Photosystem II reaction center Psb28 protein OS=Guillardia theta OX=55529 GN=psb28 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 5.6e-34
Identity = 67/109 (61.47%), Postives = 84/109 (77.06%), Query Frame = 0


Query: 75  IQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEV-GDITGFYMIDEEGVI 134
           IQFIQG +E  +PDVRLT+SRDG+ G A FRF  P V ++ + V G+ITG Y+IDEEG +
Sbjct: 4   IQFIQGVNEDVIPDVRLTRSRDGSTGTATFRFANPKVLEAQSSVKGNITGMYLIDEEGQL 63

Query: 135 QSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 183
            + DVNA+F+NGKP GIEA Y+M++  +WDRFMRFMERYS  NGL F K
Sbjct: 64  VTRDVNARFVNGKPQGIEAVYIMQSKEDWDRFMRFMERYSEDNGLSFTK 112

[Close]

BLAST of MELO3C022393.1 vs. NCBI nr
Match: XP_008459971.1 (PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic [Cucumis melo] >KAA0039893.1 photosystem II reaction center PSB28 protein [Cucumis melo var. makuwa] >TYK24609.1 photosystem II reaction center PSB28 protein [Cucumis melo var. makuwa])

HSP 1 Score: 363.2 bits (931), Expect = 1.3e-96
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MASLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60
           MASLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY
Sbjct: 1   MASLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60

Query: 61  RQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVGD 120
           RQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVGD
Sbjct: 61  RQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVGD 120

Query: 121 ITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQF 180
           ITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQF
Sbjct: 121 ITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQF 180

Query: 181 VKK 184
           VKK
Sbjct: 181 VKK 183

[Close]

BLAST of MELO3C022393.1 vs. NCBI nr
Match: XP_011656766.1 (photosystem II reaction center PSB28 protein, chloroplastic [Cucumis sativus])

HSP 1 Score: 349.7 bits (896), Expect = 1.5e-92
Identity = 175/183 (95.63%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MASLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60
           MASLQSLASTTSPSSPHLLHPSSTK +LSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY
Sbjct: 44  MASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 103

Query: 61  RQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVGD 120
           RQR WNPILMV PKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIFRF+QPSVFDSSAEVGD
Sbjct: 104 RQRSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAEVGD 163

Query: 121 ITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQF 180
           ITGFYMIDEEG+IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG+QF
Sbjct: 164 ITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQF 223

Query: 181 VKK 184
           VKK
Sbjct: 224 VKK 226

[Close]

BLAST of MELO3C022393.1 vs. NCBI nr
Match: XP_038875127.1 (photosystem II reaction center Psb28 protein [Benincasa hispida])

HSP 1 Score: 297.0 bits (759), Expect = 1.1e-76
Identity = 159/184 (86.41%), Postives = 164/184 (89.13%), Query Frame = 0


Query: 1   MASLQSLASTTSPSSPHL-LHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRT 60
           MA+LQSL S TS +SPH+  H  STK+  S +LH SAFSSFHGRSLSLS   C TLT R 
Sbjct: 1   MAALQSLVS-TSHASPHMHHHHPSTKVFPSATLHRSAFSSFHGRSLSLSAGNCQTLTHR- 60

Query: 61  YRQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVG 120
              RPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVG
Sbjct: 61  -NGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVG 120

Query: 121 DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ 180
           DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ
Sbjct: 121 DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ 180

Query: 181 FVKK 184
           FVKK
Sbjct: 181 FVKK 181

[Close]

BLAST of MELO3C022393.1 vs. NCBI nr
Match: XP_023514182.1 (photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 288.9 bits (738), Expect = 3.1e-74
Identity = 154/187 (82.35%), Postives = 165/187 (88.24%), Query Frame = 0


Query: 1   MASLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60
           MA+LQSLAST     PHL HPSSTK+  S +LH SAFS+F+GRSLS+S  KC TL RR +
Sbjct: 1   MATLQSLAST-----PHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRF 60

Query: 61  RQ--RPWNPI--LMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSA 120
               RP NPI  +MV+PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIF+FD+PSVFDSSA
Sbjct: 61  EAHGRPRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSA 120

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180

Query: 181 GLQFVKK 184
           GLQFVKK
Sbjct: 181 GLQFVKK 182

[Close]

BLAST of MELO3C022393.1 vs. NCBI nr
Match: XP_023005079.1 (photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 288.5 bits (737), Expect = 4.0e-74
Identity = 155/187 (82.89%), Postives = 164/187 (87.70%), Query Frame = 0


Query: 1   MASLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60
           MA+LQSLAST     PHL HPSSTK+  S +LH SAFS+F+GRSLS+S  KC TL RR  
Sbjct: 40  MATLQSLAST-----PHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRC 99

Query: 61  RQ--RPWNPI--LMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSA 120
               RP NPI  +MVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIF+FD+PSVFDSSA
Sbjct: 100 EAHGRPRNPIVMMMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSA 159

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 160 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 219

Query: 181 GLQFVKK 184
           GLQFVKK
Sbjct: 220 GLQFVKK 221

[Close]

BLAST of MELO3C022393.1 vs. ExPASy TrEMBL
Match: A0A5A7TA18 (Photosystem II reaction center Psb28 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001560 PE=3 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 6.3e-97
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MASLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60
           MASLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY
Sbjct: 1   MASLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60

Query: 61  RQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVGD 120
           RQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVGD
Sbjct: 61  RQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVGD 120

Query: 121 ITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQF 180
           ITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQF
Sbjct: 121 ITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQF 180

Query: 181 VKK 184
           VKK
Sbjct: 181 VKK 183

[Close]

BLAST of MELO3C022393.1 vs. ExPASy TrEMBL
Match: A0A1S3CCN2 (Photosystem II reaction center Psb28 protein OS=Cucumis melo OX=3656 GN=LOC103498926 PE=3 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 6.3e-97
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MASLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60
           MASLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY
Sbjct: 1   MASLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60

Query: 61  RQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVGD 120
           RQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVGD
Sbjct: 61  RQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVGD 120

Query: 121 ITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQF 180
           ITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQF
Sbjct: 121 ITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQF 180

Query: 181 VKK 184
           VKK
Sbjct: 181 VKK 183

[Close]

BLAST of MELO3C022393.1 vs. ExPASy TrEMBL
Match: A0A0A0K9C2 (Photosystem II reaction center Psb28 protein OS=Cucumis sativus OX=3659 GN=Csa_6G087980 PE=3 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 7.2e-93
Identity = 175/183 (95.63%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MASLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60
           MASLQSLASTTSPSSPHLLHPSSTK +LSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY
Sbjct: 194 MASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 253

Query: 61  RQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVGD 120
           RQR WNPILMV PKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIFRF+QPSVFDSSAEVGD
Sbjct: 254 RQRSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAEVGD 313

Query: 121 ITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQF 180
           ITGFYMIDEEG+IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG+QF
Sbjct: 314 ITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQF 373

Query: 181 VKK 184
           VKK
Sbjct: 374 VKK 376

[Close]

BLAST of MELO3C022393.1 vs. ExPASy TrEMBL
Match: A0A6J1KY50 (Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC111498173 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.0e-74
Identity = 155/187 (82.89%), Postives = 164/187 (87.70%), Query Frame = 0


Query: 1   MASLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60
           MA+LQSLAST     PHL HPSSTK+  S +LH SAFS+F+GRSLS+S  KC TL RR  
Sbjct: 40  MATLQSLAST-----PHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRC 99

Query: 61  RQ--RPWNPI--LMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSA 120
               RP NPI  +MVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIF+FD+PSVFDSSA
Sbjct: 100 EAHGRPRNPIVMMMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSA 159

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 160 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 219

Query: 181 GLQFVKK 184
           GLQFVKK
Sbjct: 220 GLQFVKK 221

[Close]

BLAST of MELO3C022393.1 vs. ExPASy TrEMBL
Match: A0A6J1GP93 (Photosystem II reaction center Psb28 protein OS=Cucurbita moschata OX=3662 GN=LOC111455888 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 4.4e-74
Identity = 156/187 (83.42%), Postives = 164/187 (87.70%), Query Frame = 0


Query: 1   MASLQSLASTTSPSSPHLLHPSS--TKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRR 60
           MA+LQSLAS TS SSPHL HPSS  TK   S  LHSS FS+FHGRSL++S  KC T+TRR
Sbjct: 44  MATLQSLAS-TSLSSPHLHHPSSTNTKACASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 103

Query: 61  TYRQ--RPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSA 120
             +   RP N ILMV PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIF+F+QPSVFDSS 
Sbjct: 104 RCQPYGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 163

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 164 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 223

Query: 181 GLQFVKK 184
           GLQFVKK
Sbjct: 224 GLQFVKK 229

[Close]

BLAST of MELO3C022393.1 vs. TAIR 10
Match: AT4G28660.1 (photosystem II reaction center PSB28 protein )

HSP 1 Score: 203.0 bits (515), Expect = 2.1e-52
Identity = 110/186 (59.14%), Postives = 136/186 (73.12%), Query Frame = 0


Query: 1   MASLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60
           MA ++S+ S TS +      P S  +  S S+     SSF G  +SL   +  + T    
Sbjct: 1   MACVRSIGSLTSVNHSQRNVPRSGIVLSSCSVLPIKSSSFTGSPVSLPRAQPSSRT---- 60

Query: 61  RQRPWNPI---LMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAE 120
             RP  P+   +MV+P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F FDQPSVFDSS E
Sbjct: 61  ALRPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGE 120

Query: 121 VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 180
           VG+ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR+P+EWDRFMRFMERYS+ NG
Sbjct: 121 VGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQNG 180

Query: 181 LQFVKK 184
           LQFVKK
Sbjct: 181 LQFVKK 182

[Close]

BLAST of MELO3C022393.1 vs. TAIR 10
Match: AT4G28660.2 (photosystem II reaction center PSB28 protein )

HSP 1 Score: 196.8 bits (499), Expect = 1.5e-50
Identity = 113/201 (56.22%), Postives = 140/201 (69.65%), Query Frame = 0


Query: 1   MASLQSLASTTS--------PSSPHLLHPSSTKL--RLSYSLHSSAF-----SSFHGRSL 60
           MA ++S+ S TS        P S    +P+   L  R+   L S +      SSF G  +
Sbjct: 1   MACVRSIGSLTSVNHSQRNVPRSGTRKNPNFALLIRRIGIVLSSCSVLPIKSSSFTGSPV 60

Query: 61  SLSTTKCHTLTRRTYRQRPWNPI---LMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMA 120
           SL   +  + T      RP  P+   +MV+P +QFIQGTDE T+PDV+LT+SRDG+NGMA
Sbjct: 61  SLPRAQPSSRT----ALRPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMA 120

Query: 121 IFRFDQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREW 180
           +F FDQPSVFDSS EVG+ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR+P+EW
Sbjct: 121 LFSFDQPSVFDSSGEVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEW 180

Query: 181 DRFMRFMERYSNANGLQFVKK 184
           DRFMRFMERYS+ NGLQFVKK
Sbjct: 181 DRFMRFMERYSDQNGLQFVKK 197

The following BLAST results are available for this feature:

BLAST of MELO3C022393.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0JG75	2.6e-55	65.43	Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subs...	[more]
Q8W0Y8	2.9e-51	59.14	Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thali...	[more]
P49508	5.0e-35	59.29	Photosystem II reaction center Psb28 protein OS=Trieres chinensis OX=1514140 GN=...	[more]
A0T0H5	1.1e-34	57.52	Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strai...	[more]
O78418	5.6e-34	61.47	Photosystem II reaction center Psb28 protein OS=Guillardia theta OX=55529 GN=psb...	[more]

BLAST of MELO3C022393.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459971.1	1.3e-96	100.00	PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic [Cucumis ...	[more]
XP_011656766.1	1.5e-92	95.63	photosystem II reaction center PSB28 protein, chloroplastic [Cucumis sativus]	[more]
XP_038875127.1	1.1e-76	86.41	photosystem II reaction center Psb28 protein [Benincasa hispida]	[more]
XP_023514182.1	3.1e-74	82.35	photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita pepo...	[more]
XP_023005079.1	4.0e-74	82.89	photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita maxi...	[more]

BLAST of MELO3C022393.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TA18	6.3e-97	100.00	Photosystem II reaction center Psb28 protein OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3CCN2	6.3e-97	100.00	Photosystem II reaction center Psb28 protein OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A0A0K9C2	7.2e-93	95.63	Photosystem II reaction center Psb28 protein OS=Cucumis sativus OX=3659 GN=Csa_6...	[more]
A0A6J1KY50	2.0e-74	82.89	Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1GP93	4.4e-74	83.42	Photosystem II reaction center Psb28 protein OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of MELO3C022393.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28660.1	2.1e-52	59.14	photosystem II reaction center PSB28 protein	[more]
AT4G28660.2	1.5e-50	56.22	photosystem II reaction center PSB28 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005610	Photosystem II Psb28, class 1	PFAM	PF03912	Psb28	coord: 75..180 e-value: 5.4E-43 score: 145.5
IPR005610	Photosystem II Psb28, class 1	TIGRFAM	TIGR03047	TIGR03047	coord: 75..181 e-value: 2.5E-45 score: 151.2
IPR005610	Photosystem II Psb28, class 1	PANTHER	PTHR34963	FAMILY NOT NAMED	coord: 1..183
IPR005610	Photosystem II Psb28, class 1	HAMAP	MF_01370	PSII_Psb28	coord: 72..181 score: 30.461342
IPR038676	Photosystem II Psb28, class 1 superfamily	GENE3D	2.40.30.220	Photosystem II Psb28	coord: 73..183 e-value: 1.7E-45 score: 155.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C022393	MELO3C022393	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C022393.1:exon:338567	MELO3C022393.1:exon:338567	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C022393.1:five_prime_utr	MELO3C022393.1:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C022393.1:cds	MELO3C022393.1:cds	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C022393.1:three_prime_utr	MELO3C022393.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C022393.1	MELO3C022393.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0016020	membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009654	photosystem II oxygen evolving complex