MELO3C020006.jh1.t2 (mRNA) Melon (Harukei-3) v1.41
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidestart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.AGGAAAAATCTTTCTTGGGAGTGCTTGGTTTCTAACAGGGGGCTTGGGTTTTGTGAGGCTAAGAGATTTTCAGTTCTTTTGATGTTTTATCCTGGTTCTTCTCAGAAGATCCTCCATGGGAAACCAAGCTTTTTGCAGCCATGGACACTGTTCTTTGATATGCTCTTGTATTTTGGTTTTTTGAGTGACTGGTAAGATGCTTCGAAACTTCCTAAGAATCCTAAAAGCTGTTTGATTTAACTCTCAAAGAATCATCATTCATCATCCTTTCTAGTTGAAGGCAGATCAGGAAGAATCAAAACAAAGCCCCCTTTTTACAATTGAGCTTCGATTAAGGTCCAGAGAAGAGAGAGCTAGAAGGTGTGAACAGAGAACACGAGGGTTTTATTGGTACATGAGTGGATATGAACTTTCTACTTTAAGTCTCTATTATGAATCGATTCAGTCATCAAAGAATTATAGGGTTCTGAATTATCAAGTTTCACTGTGGAATTTCATCAACCAGGTTCAAGATCTAAAAGTGAATTACCTGACAGAAGCAATCCTGTTGTTGCTTTGAAGTAATTAGCAGCTCCTATGACGATGGAGTCCAATCACCACCGTCCGCGCTCTCACCGCCTCCTCCTCGACGCCGACACGACGGCAGCACCGTCCAACGGAAGCAGAACGCGAAATTCATATAACAACGAAGCCAATTTCGATACAAACATGGTGATAATTCTTGCCGCTTTACTCTGCGCACTGATTTGCGCTCTAGGATTGAACTCAATCGTCCGGTGCGCCCTCCGGTGCAGCCGACGGTTCGCCTTCGAAACAGGCGGCGGCACAGCCTCGCGTCTCACTGCTTCAGGGCTAAAGAAAAGCGCATTACGCCAAATTCCGGTCGCGGTATACGGCTCGGAAACAGGCCTAGAGATCCGAGAAACGGATTGCCCTATCTGCCTAGGAGATTTCATCGCCGGCGAGAAAATCAAAGTACTCCCCAAATGTAACCACGGATTTCACGTTCGATGTATCGATACCTGGTTAGCTTCCCACTCGTCGTGTCCGACATGTCGTCAATCACTGCTGGAACAACAGTCGGTTTCTGAATCGGCGGGAGCAGAGGCCGGTAACCGACCCGCCGGAAATTCATCGGCTAGCGGGCAAGGTGAGATCTCGATAACAGTAGATGAAATTACCTGATTTCAAGGGTTTGCATATTATTTTCATTTGCACATAAATATTCTTTAATTGTTTCAGTTTCCTTTTTAGCGTTTCTTAAGTATTAATAATCTGGATTATACACTAATTAATACAATTAGTGCTTAATTATGAGTTA AGGAAAAATCTTTCTTGGGAGTGCTTGGTTTCTAACAGGGGGCTTGGGTTTTGTGAGGCTAAGAGATTTTCAGTTCTTTTGATGTTTTATCCTGGTTCTTCTCAGAAGATCCTCCATGGGAAACCAAGCTTTTTGCAGCCATGGACACTGTTCTTTGATATGCTCTTGTATTTTGGTTTTTTGAGTGACTGGTAAGATGCTTCGAAACTTCCTAAGAATCCTAAAAGCTGTTTGATTTAACTCTCAAAGAATCATCATTCATCATCCTTTCTAGTTGAAGGCAGATCAGGAAGAATCAAAACAAAGCCCCCTTTTTACAATTGAGCTTCGATTAAGGTCCAGAGAAGAGAGAGCTAGAAGGTGTGAACAGAGAACACGAGGGTTTTATTGGTTCAAGATCTAAAAGTGAATTACCTGACAGAAGCAATCCTGTTGTTGCTTTGAAGTAATTAGCAGCTCCTATGACGATGGAGTCCAATCACCACCGTCCGCGCTCTCACCGCCTCCTCCTCGACGCCGACACGACGGCAGCACCGTCCAACGGAAGCAGAACGCGAAATTCATATAACAACGAAGCCAATTTCGATACAAACATGGTGATAATTCTTGCCGCTTTACTCTGCGCACTGATTTGCGCTCTAGGATTGAACTCAATCGTCCGGTGCGCCCTCCGGTGCAGCCGACGGTTCGCCTTCGAAACAGGCGGCGGCACAGCCTCGCGTCTCACTGCTTCAGGGCTAAAGAAAAGCGCATTACGCCAAATTCCGGTCGCGGTATACGGCTCGGAAACAGGCCTAGAGATCCGAGAAACGGATTGCCCTATCTGCCTAGGAGATTTCATCGCCGGCGAGAAAATCAAAGTACTCCCCAAATGTAACCACGGATTTCACGTTCGATGTATCGATACCTGGTTAGCTTCCCACTCGTCGTGTCCGACATGTCGTCAATCACTGCTGGAACAACAGTCGGTTTCTGAATCGGCGGGAGCAGAGGCCGGTAACCGACCCGCCGGAAATTCATCGGCTAGCGGGCAAGGTGAGATCTCGATAACAGTAGATGAAATTACCTGATTTCAAGGGTTTGCATATTATTTTCATTTGCACATAAATATTCTTTAATTGTTTCAGTTTCCTTTTTAGCGTTTCTTAAGTATTAATAATCTGGATTATACACTAATTAATACAATTAGTGCTTAATTATGAGTTA ATGACGATGGAGTCCAATCACCACCGTCCGCGCTCTCACCGCCTCCTCCTCGACGCCGACACGACGGCAGCACCGTCCAACGGAAGCAGAACGCGAAATTCATATAACAACGAAGCCAATTTCGATACAAACATGGTGATAATTCTTGCCGCTTTACTCTGCGCACTGATTTGCGCTCTAGGATTGAACTCAATCGTCCGGTGCGCCCTCCGGTGCAGCCGACGGTTCGCCTTCGAAACAGGCGGCGGCACAGCCTCGCGTCTCACTGCTTCAGGGCTAAAGAAAAGCGCATTACGCCAAATTCCGGTCGCGGTATACGGCTCGGAAACAGGCCTAGAGATCCGAGAAACGGATTGCCCTATCTGCCTAGGAGATTTCATCGCCGGCGAGAAAATCAAAGTACTCCCCAAATGTAACCACGGATTTCACGTTCGATGTATCGATACCTGGTTAGCTTCCCACTCGTCGTGTCCGACATGTCGTCAATCACTGCTGGAACAACAGTCGGTTTCTGAATCGGCGGGAGCAGAGGCCGGTAACCGACCCGCCGGAAATTCATCGGCTAGCGGGCAAGGTGAGATCTCGATAACAGTAGATGAAATTACCTGA MTMESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAGAEAGNRPAGNSSASGQGEISITVDEIT Homology
BLAST of MELO3C020006.jh1.t2 vs. NCBI nr
Match: KAA0052006.1 (RING-H2 finger protein ATL72 [Cucumis melo var. makuwa] >TYK04553.1 RING-H2 finger protein ATL72 [Cucumis melo var. makuwa]) HSP 1 Score: 393 bits (1009), Expect = 1.11e-137 Identity = 199/200 (99.50%), Postives = 200/200 (100.00%), Query Frame = 0
BLAST of MELO3C020006.jh1.t2 vs. NCBI nr
Match: XP_023550807.1 (RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo] >XP_023550808.1 RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 357 bits (915), Expect = 2.54e-123 Identity = 178/202 (88.12%), Postives = 189/202 (93.56%), Query Frame = 0
BLAST of MELO3C020006.jh1.t2 vs. NCBI nr
Match: XP_038885444.1 (RING-H2 finger protein ATL74-like [Benincasa hispida]) HSP 1 Score: 358 bits (919), Expect = 4.04e-123 Identity = 182/192 (94.79%), Postives = 186/192 (96.88%), Query Frame = 0
BLAST of MELO3C020006.jh1.t2 vs. NCBI nr
Match: XP_011656436.1 (RING-H2 finger protein ATL72 [Cucumis sativus] >KAE8646578.1 hypothetical protein Csa_005410 [Cucumis sativus]) HSP 1 Score: 357 bits (915), Expect = 4.32e-123 Identity = 181/192 (94.27%), Postives = 184/192 (95.83%), Query Frame = 0
BLAST of MELO3C020006.jh1.t2 vs. NCBI nr
Match: XP_022938777.1 (RING-H2 finger protein ATL74-like [Cucurbita moschata]) HSP 1 Score: 355 bits (911), Expect = 1.04e-122 Identity = 177/202 (87.62%), Postives = 188/202 (93.07%), Query Frame = 0
BLAST of MELO3C020006.jh1.t2 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1) HSP 1 Score: 178.3 bits (451), Expect = 8.5e-44 Identity = 96/163 (58.90%), Postives = 114/163 (69.94%), Query Frame = 0
BLAST of MELO3C020006.jh1.t2 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1) HSP 1 Score: 176.0 bits (445), Expect = 4.2e-43 Identity = 88/149 (59.06%), Postives = 109/149 (73.15%), Query Frame = 0
BLAST of MELO3C020006.jh1.t2 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1) HSP 1 Score: 169.1 bits (427), Expect = 5.2e-41 Identity = 85/154 (55.19%), Postives = 107/154 (69.48%), Query Frame = 0
BLAST of MELO3C020006.jh1.t2 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 4.1e-38 Identity = 77/150 (51.33%), Postives = 101/150 (67.33%), Query Frame = 0
BLAST of MELO3C020006.jh1.t2 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1) HSP 1 Score: 135.2 bits (339), Expect = 8.3e-31 Identity = 64/133 (48.12%), Postives = 86/133 (64.66%), Query Frame = 0
BLAST of MELO3C020006.jh1.t2 vs. ExPASy TrEMBL
Match: A0A5D3BXT6 (RING-H2 finger protein ATL72 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001810 PE=4 SV=1) HSP 1 Score: 393 bits (1009), Expect = 5.36e-138 Identity = 199/200 (99.50%), Postives = 200/200 (100.00%), Query Frame = 0
BLAST of MELO3C020006.jh1.t2 vs. ExPASy TrEMBL
Match: A0A0A0KAH2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G014550 PE=4 SV=1) HSP 1 Score: 372 bits (955), Expect = 9.84e-130 Identity = 190/202 (94.06%), Postives = 193/202 (95.54%), Query Frame = 0
BLAST of MELO3C020006.jh1.t2 vs. ExPASy TrEMBL
Match: A0A6J1FF16 (RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111444892 PE=4 SV=1) HSP 1 Score: 355 bits (911), Expect = 5.01e-123 Identity = 177/202 (87.62%), Postives = 188/202 (93.07%), Query Frame = 0
BLAST of MELO3C020006.jh1.t2 vs. ExPASy TrEMBL
Match: A0A6J1JVF4 (RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111489233 PE=4 SV=1) HSP 1 Score: 355 bits (910), Expect = 7.12e-123 Identity = 177/202 (87.62%), Postives = 188/202 (93.07%), Query Frame = 0
BLAST of MELO3C020006.jh1.t2 vs. ExPASy TrEMBL
Match: A0A6J1BZW4 (RING-H2 finger protein ATL74 OS=Momordica charantia OX=3673 GN=LOC111006761 PE=4 SV=1) HSP 1 Score: 337 bits (864), Expect = 5.31e-116 Identity = 170/192 (88.54%), Postives = 178/192 (92.71%), Query Frame = 0
BLAST of MELO3C020006.jh1.t2 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein ) HSP 1 Score: 178.3 bits (451), Expect = 6.1e-45 Identity = 96/163 (58.90%), Postives = 114/163 (69.94%), Query Frame = 0
BLAST of MELO3C020006.jh1.t2 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein ) HSP 1 Score: 176.0 bits (445), Expect = 3.0e-44 Identity = 88/149 (59.06%), Postives = 109/149 (73.15%), Query Frame = 0
BLAST of MELO3C020006.jh1.t2 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein ) HSP 1 Score: 169.1 bits (427), Expect = 3.7e-42 Identity = 85/154 (55.19%), Postives = 107/154 (69.48%), Query Frame = 0
BLAST of MELO3C020006.jh1.t2 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein ) HSP 1 Score: 159.5 bits (402), Expect = 2.9e-39 Identity = 77/150 (51.33%), Postives = 101/150 (67.33%), Query Frame = 0
BLAST of MELO3C020006.jh1.t2 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein ) HSP 1 Score: 135.2 bits (339), Expect = 5.9e-32 Identity = 64/133 (48.12%), Postives = 86/133 (64.66%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
|