MELO3C020006.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C020006.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	RING-H2 finger protein ATL72
Location	chr03: 19834631 .. 19836205 (-)
RNA-Seq Expression	MELO3C020006.jh1
Synteny	MELO3C020006.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTGGCTAGAGGAAAAATCTTTCTTGGGAGTGCTTGGTTTCTAACAGGGGGCTTGGGTTTTGTGAGGCTAAGAGATTTTCAGTTCTTTTGATGTTTTATCCTGGTTCTTCTCAGAAGATCCTCCATGGGAAACCAAGCTTTTTGCAGCCATGGACACTGTTCTTTGATATGCTCTTGTATTTTGGTTTTTTGAGTGACTGGTAAGATGCTTCGAAACTTCCTAAGAATCCTAAAAGCTGTTTGATTTAACTCTCAAAGAATCATCATTCATCATCCTTTCTAGTTGAAGGCAGATCAGGAAGAATCAAAACAAAGCCCCCTTTTTACAATTGAGCTTCGATTAAGGTCCAGAGAAGAGAGAGCTAGAAGGTGTGAACAGAGAACACGAGGGTTTTATTGGTACATGAGTGGATATGAACTTTCTACTTTAAGTCTCTATTATGAATCGATTCAGTCATCAAAGAATTATAGGGTTCTGAATTATCAAGTTTCACTGTGGAATTTCATCAACCAGGTTCAAGATCTAAAAGTGAATTACCTGACAGAAGCAATCCTGTTGTTGCTTTGAAGTAATTAGCAGCTCCTATGACGATGGAGTCCAATCACCACCGTCCGCGCTCTCACCGCCTCCTCCTCGACGCCGACACGACGGCAGCACCGTCCAACGGAAGCAGAACGCGAAATTCATATAACAACGAAGCCAATTTCGATACAAACATGGTGATAATTCTTGCCGCTTTACTCTGCGCACTGATTTGCGCTCTAGGATTGAACTCAATCGTCCGGTGCGCCCTCCGGTGCAGCCGACGGTTCGCCTTCGAAACAGGCGGCGGCACAGCCTCGCGTCTCACTGCTTCAGGGCTAAAGAAAAGCGCATTACGCCAAATTCCGGTCGCGGTATACGGCTCGGAAACAGGCCTAGAGATCCGAGAAACGGATTGCCCTATCTGCCTAGGAGATTTCATCGCCGGCGAGAAAATCAAAGTACTCCCCAAATGTAACCACGGATTTCACGTTCGATGTATCGATACCTGGTTAGCTTCCCACTCGTCGTGTCCGACATGTCGTCAATCACTGCTGGAACAACAGTCGGTTTCTGAATCGGCGGGAGCAGAGGCCGGTAACCGACCCGCCGGAAATTCATCGGCTAGCGGGCAAGGTGAGATCTCGATAACAGTAGATGAAATTACCTGATTTCAAGGGTTTGCATATTATTTTCATTTGCACATAAATATTCTTTAATTGTTTCAGTTTCCTTTTTAGCGTTTCTTAAGTATTAATAATCTGGATTATACACTAATTAATACAATTAGTGCTTAATTATGAGTTATGTACAATAAATAACCGCATAATTTTCAAATTTTAGGTTTCTTTTTTTTTCCTTTTTGTTTTGTTACCACACCTGGTTGAGTGAGGATTTCAACCTAAACTGGAGTTCACGAGGACATATGATTTCTAGTGATTTTTTTTTATCCCATAATAACTTTAAATATCTTACCGTTATAGGTAAATGTTATGTTCTTAAGAGATACAGAAGTTCATTGATGATTATTGTCAAATTACTTCACCAATAA

mRNA sequence

GTTTGGCTAGAGGAAAAATCTTTCTTGGGAGTGCTTGGTTTCTAACAGGGGGCTTGGGTTTTGTGAGGCTAAGAGATTTTCAGTTCTTTTGATGTTTTATCCTGGTTCTTCTCAGAAGATCCTCCATGGGAAACCAAGCTTTTTGCAGCCATGGACACTGTTCTTTGATATGCTCTTGTATTTTGGTTTTTTGAGTGACTGGTAAGATGCTTCGAAACTTCCTAAGAATCCTAAAAGCTGTTTGATTTAACTCTCAAAGAATCATCATTCATCATCCTTTCTAGTTGAAGGCAGATCAGGAAGAATCAAAACAAAGCCCCCTTTTTACAATTGAGCTTCGATTAAGGTCCAGAGAAGAGAGAGCTAGAAGGTGTGAACAGAGAACACGAGGGTTTTATTGGTACATGAGTGGATATGAACTTTCTACTTTAAGTCTCTATTATGAATCGATTCAGTCATCAAAGAATTATAGGGTTCTGAATTATCAAGTTTCACTGTGGAATTTCATCAACCAGGTTCAAGATCTAAAAGTGAATTACCTGACAGAAGCAATCCTGTTGTTGCTTTGAAGTAATTAGCAGCTCCTATGACGATGGAGTCCAATCACCACCGTCCGCGCTCTCACCGCCTCCTCCTCGACGCCGACACGACGGCAGCACCGTCCAACGGAAGCAGAACGCGAAATTCATATAACAACGAAGCCAATTTCGATACAAACATGGTGATAATTCTTGCCGCTTTACTCTGCGCACTGATTTGCGCTCTAGGATTGAACTCAATCGTCCGGTGCGCCCTCCGGTGCAGCCGACGGTTCGCCTTCGAAACAGGCGGCGGCACAGCCTCGCGTCTCACTGCTTCAGGGCTAAAGAAAAGCGCATTACGCCAAATTCCGGTCGCGGTATACGGCTCGGAAACAGGCCTAGAGATCCGAGAAACGGATTGCCCTATCTGCCTAGGAGATTTCATCGCCGGCGAGAAAATCAAAGTACTCCCCAAATGTAACCACGGATTTCACGTTCGATGTATCGATACCTGGTTAGCTTCCCACTCGTCGTGTCCGACATGTCGTCAATCACTGCTGGAACAACAGTCGGTTTCTGAATCGGCGGGAGCAGAGGCCGGTAACCGACCCGCCGGAAATTCATCGGCTAGCGGGCAAGGTGAGATCTCGATAACAGTAGATGAAATTACCTGATTTCAAGGGTTTGCATATTATTTTCATTTGCACATAAATATTCTTTAATTGTTTCAGTTTCCTTTTTAGCGTTTCTTAAGTATTAATAATCTGGATTATACACTAATTAATACAATTAGTGCTTAATTATGAGTTATGTACAATAAATAACCGCATAATTTTCAAATTTTAGGTTTCTTTTTTTTTCCTTTTTGTTTTGTTACCACACCTGGTTGAGTGAGGATTTCAACCTAAACTGGAGTTCACGAGGACATATGATTTCTAGTGATTTTTTTTTATCCCATAATAACTTTAAATATCTTACCGTTATAGGTAAATGTTATGTTCTTAAGAGATACAGAAGTTCATTGATGATTATTGTCAAATTACTTCACCAATAA

Coding sequence (CDS)

ATGACGATGGAGTCCAATCACCACCGTCCGCGCTCTCACCGCCTCCTCCTCGACGCCGACACGACGGCAGCACCGTCCAACGGAAGCAGAACGCGAAATTCATATAACAACGAAGCCAATTTCGATACAAACATGGTGATAATTCTTGCCGCTTTACTCTGCGCACTGATTTGCGCTCTAGGATTGAACTCAATCGTCCGGTGCGCCCTCCGGTGCAGCCGACGGTTCGCCTTCGAAACAGGCGGCGGCACAGCCTCGCGTCTCACTGCTTCAGGGCTAAAGAAAAGCGCATTACGCCAAATTCCGGTCGCGGTATACGGCTCGGAAACAGGCCTAGAGATCCGAGAAACGGATTGCCCTATCTGCCTAGGAGATTTCATCGCCGGCGAGAAAATCAAAGTACTCCCCAAATGTAACCACGGATTTCACGTTCGATGTATCGATACCTGGTTAGCTTCCCACTCGTCGTGTCCGACATGTCGTCAATCACTGCTGGAACAACAGTCGGTTTCTGAATCGGCGGGAGCAGAGGCCGGTAACCGACCCGCCGGAAATTCATCGGCTAGCGGGCAAGGTGAGATCTCGATAACAGTAGATGAAATTACCTGA

Protein sequence

MTMESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAGAEAGNRPAGNSSASGQGEISITVDEIT

Homology

[Close]

BLAST of MELO3C020006.jh1 vs. NCBI nr
Match: KAA0052006.1 (RING-H2 finger protein ATL72 [Cucumis melo var. makuwa] >TYK04553.1 RING-H2 finger protein ATL72 [Cucumis melo var. makuwa])

HSP 1 Score: 393 bits (1009), Expect = 1.11e-137
Identity = 199/200 (99.50%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 3   MESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL 62
           MESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL
Sbjct: 1   MESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL 60

Query: 63  NSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPIC 122
           NSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPIC
Sbjct: 61  NSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPIC 120

Query: 123 LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAGAEAGNRP 182
           LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSL+EQQSVSESAGAEAGNRP
Sbjct: 121 LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGNRP 180

Query: 183 AGNSSASGQGEISITVDEIT 202
           AGNSSASGQGEISITVDEIT
Sbjct: 181 AGNSSASGQGEISITVDEIT 200

[Close]

BLAST of MELO3C020006.jh1 vs. NCBI nr
Match: XP_023550807.1 (RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo] >XP_023550808.1 RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 357 bits (915), Expect = 2.54e-123
Identity = 178/202 (88.12%), Postives = 189/202 (93.56%), Query Frame = 0


Query: 1   MTMESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           M M S+HHRPR HRLLLDA+TT APSNGSRTRNSY NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCALRCSRRF+FETGGGTASRL A+GLKKSALR++PV VYGSE+GL IRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAGAEAGN 180
           ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQS SES  A+AGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 181 RPAGNSSASGQGEISITVDEIT 202
           RPAGNSSASGQGEISI +D+I+
Sbjct: 181 RPAGNSSASGQGEISIPIDQIS 202

[Close]

BLAST of MELO3C020006.jh1 vs. NCBI nr
Match: XP_038885444.1 (RING-H2 finger protein ATL74-like [Benincasa hispida])

HSP 1 Score: 358 bits (919), Expect = 4.04e-123
Identity = 182/192 (94.79%), Postives = 186/192 (96.88%), Query Frame = 0


Query: 1   MTMESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           MTMESNHHRPR HRLLLDADTTAAPSNGSRTRNSY+NEANFDTNMVIILAALLCALI AL
Sbjct: 1   MTMESNHHRPRPHRLLLDADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALIFAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCALRCSRRFAFETGGGTASRL A+GLKKSALRQIPVAVYGSE+GL+IRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETGGGTASRLAATGLKKSALRQIPVAVYGSESGLKIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAGAEAGN 180
           ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQS SESA AEAGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAEAEAGN 180

Query: 181 RPAGNSSASGQG 192
            PAGNSSASGQG
Sbjct: 181 PPAGNSSASGQG 192

[Close]

BLAST of MELO3C020006.jh1 vs. NCBI nr
Match: XP_011656436.1 (RING-H2 finger protein ATL72 [Cucumis sativus] >KAE8646578.1 hypothetical protein Csa_005410 [Cucumis sativus])

HSP 1 Score: 357 bits (915), Expect = 4.32e-123
Identity = 181/192 (94.27%), Postives = 184/192 (95.83%), Query Frame = 0


Query: 1   MTMESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           M MESNHHRPR  RLLLD DTTA PSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL
Sbjct: 1   MRMESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCALRCSRRFAFETGGGTASRLTA+GLKKSALRQIPVAVYGSETGLEIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAGAEAGN 180
           ICLGDF+AGEKIK+LPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESA  EAGN
Sbjct: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGN 180

Query: 181 RPAGNSSASGQG 192
           R AGNSSASGQG
Sbjct: 181 RGAGNSSASGQG 192

[Close]

BLAST of MELO3C020006.jh1 vs. NCBI nr
Match: XP_022938777.1 (RING-H2 finger protein ATL74-like [Cucurbita moschata])

HSP 1 Score: 355 bits (911), Expect = 1.04e-122
Identity = 177/202 (87.62%), Postives = 188/202 (93.07%), Query Frame = 0


Query: 1   MTMESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           M M S+HHRPR HRLLLDA+TT APSNGSRTRNSY NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCA RCSRRF+FETGGGTASRL A+GLKKSALR++PV VYGSE+GL IRETDCP
Sbjct: 61  GLNSIVRCAFRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAGAEAGN 180
           ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQS SES  A+AGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 181 RPAGNSSASGQGEISITVDEIT 202
           RPAGNSSASGQGEISI +D+I+
Sbjct: 181 RPAGNSSASGQGEISIPIDQIS 202

[Close]

BLAST of MELO3C020006.jh1 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 8.5e-44
Identity = 96/163 (58.90%), Postives = 114/163 (69.94%), Query Frame = 0


Query: 14  RLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCS 73
           RLLL+     AP+N +       N+  FDTNMVIILAALLCALICAL LNS +RC LR +
Sbjct: 3   RLLLEPQAN-APANANPKPKGGINDTYFDTNMVIILAALLCALICALSLNSALRCVLRIT 62

Query: 74  RRFAFETGGGTASR--------LTASGLKKSALRQIPVAVYGSETGLEIRETDCPICLGD 133
           RRF  +     AS           A+GLKK AL+QIPV +YGS   ++++ T+C ICLGD
Sbjct: 63  RRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGSGI-IDMKATECLICLGD 122

Query: 134 FIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQ 169
           F  GEK++VLPKCNHGFHVRCIDTWL S SSCPTCRQSLL +Q
Sbjct: 123 FEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQ 163

[Close]

BLAST of MELO3C020006.jh1 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 4.2e-43
Identity = 88/149 (59.06%), Postives = 109/149 (73.15%), Query Frame = 0


Query: 21  TTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFET 80
           T A P     + ++  N A+ DT+MVIILAALLCALICALG+NS++RC LRC+RRF    
Sbjct: 17  TDANPRTLGDSVSNNKNIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNE 76

Query: 81  GGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFIAGEKIKVLPKCNH 140
                +   A G+KK AL+ IPV  Y  E  L+++ T+C ICLGDF+ GE ++VLPKCNH
Sbjct: 77  DPVDTNANVAKGIKKRALKVIPVDSYSPE--LKMKATECLICLGDFVEGETVRVLPKCNH 136

Query: 141 GFHVRCIDTWLASHSSCPTCRQSLLEQQS 170
           GFHV+CIDTWL SHSSCPTCRQSLLE Q+
Sbjct: 137 GFHVKCIDTWLLSHSSCPTCRQSLLEHQT 163

[Close]

BLAST of MELO3C020006.jh1 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 5.2e-41
Identity = 85/154 (55.19%), Postives = 107/154 (69.48%), Query Frame = 0


Query: 13  HRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRC 72
           HRLLL++      ++GS   + Y  + NFD NMVIILAALLCALI ALGLNSI+RCA+RC
Sbjct: 2   HRLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRC 61

Query: 73  SRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFIAGEKI 132
               +     GT +    +GLKK  L++ PVA YGS   ++I  T+C ICLG+F  GE++
Sbjct: 62  GFGLSSSAAAGTVA--DRAGLKKRELKKFPVAEYGSGE-VKIAATECAICLGEFADGERV 121

Query: 133 KVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLE 167
           +VLP CNH FH+ CIDTWL SHSSCP CR SL+E
Sbjct: 122 RVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIE 152

[Close]

BLAST of MELO3C020006.jh1 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 4.1e-38
Identity = 77/150 (51.33%), Postives = 101/150 (67.33%), Query Frame = 0


Query: 18  DADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFA 77
           D   T APS        Y  + NFD N+V++L+ LLCAL+C+LGLNSI+RCALRCS    
Sbjct: 36  DQSPTPAPS-------PYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVP 95

Query: 78  FETGGGT-ASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFIAGEKIKVLP 137
            E GG     RLT +G+K+ AL+      Y +E  L   +T+C ICL +F+A E++K+LP
Sbjct: 96  SEAGGDNYPVRLTNTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLP 155

Query: 138 KCNHGFHVRCIDTWLASHSSCPTCRQSLLE 167
            C+HGFHVRCID WL+SHSSCPTCR  L++
Sbjct: 156 TCHHGFHVRCIDKWLSSHSSCPTCRHCLIQ 178

[Close]

BLAST of MELO3C020006.jh1 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 8.3e-31
Identity = 64/133 (48.12%), Postives = 86/133 (64.66%), Query Frame = 0


Query: 37  NEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGTASRLTAS---GL 96
           +E N   N++++L+ L+C +IC LGL+ I+RCALR S RF       + S    S   G+
Sbjct: 50  HENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKGI 109

Query: 97  KKSALRQIPVAVYGSETGLEIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLAS 156
           KK ALR  PV  Y  E  L   + +C ICL DF++GE++++LPKCNHGFHVRCID WL  
Sbjct: 110 KKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQ 169

Query: 157 HSSCPTCRQSLLE 167
           H +CP CR  L+E
Sbjct: 170 HLTCPKCRNCLVE 182

[Close]

BLAST of MELO3C020006.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BXT6 (RING-H2 finger protein ATL72 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001810 PE=4 SV=1)

HSP 1 Score: 393 bits (1009), Expect = 5.36e-138
Identity = 199/200 (99.50%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 3   MESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL 62
           MESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL
Sbjct: 1   MESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL 60

Query: 63  NSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPIC 122
           NSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPIC
Sbjct: 61  NSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPIC 120

Query: 123 LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAGAEAGNRP 182
           LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSL+EQQSVSESAGAEAGNRP
Sbjct: 121 LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGNRP 180

Query: 183 AGNSSASGQGEISITVDEIT 202
           AGNSSASGQGEISITVDEIT
Sbjct: 181 AGNSSASGQGEISITVDEIT 200

[Close]

BLAST of MELO3C020006.jh1 vs. ExPASy TrEMBL
Match: A0A0A0KAH2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G014550 PE=4 SV=1)

HSP 1 Score: 372 bits (955), Expect = 9.84e-130
Identity = 190/202 (94.06%), Postives = 193/202 (95.54%), Query Frame = 0


Query: 1   MTMESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           M MESNHHRPR  RLLLD DTTA PSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL
Sbjct: 1   MRMESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCALRCSRRFAFETGGGTASRLTA+GLKKSALRQIPVAVYGSETGLEIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAGAEAGN 180
           ICLGDF+AGEKIK+LPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESA  EAGN
Sbjct: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGN 180

Query: 181 RPAGNSSASGQGEISITVDEIT 202
           R AGNSSASGQGEISITVD IT
Sbjct: 181 RGAGNSSASGQGEISITVDGIT 202

[Close]

BLAST of MELO3C020006.jh1 vs. ExPASy TrEMBL
Match: A0A6J1FF16 (RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111444892 PE=4 SV=1)

HSP 1 Score: 355 bits (911), Expect = 5.01e-123
Identity = 177/202 (87.62%), Postives = 188/202 (93.07%), Query Frame = 0


Query: 1   MTMESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           M M S+HHRPR HRLLLDA+TT APSNGSRTRNSY NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCA RCSRRF+FETGGGTASRL A+GLKKSALR++PV VYGSE+GL IRETDCP
Sbjct: 61  GLNSIVRCAFRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAGAEAGN 180
           ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQS SES  A+AGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 181 RPAGNSSASGQGEISITVDEIT 202
           RPAGNSSASGQGEISI +D+I+
Sbjct: 181 RPAGNSSASGQGEISIPIDQIS 202

[Close]

BLAST of MELO3C020006.jh1 vs. ExPASy TrEMBL
Match: A0A6J1JVF4 (RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111489233 PE=4 SV=1)

HSP 1 Score: 355 bits (910), Expect = 7.12e-123
Identity = 177/202 (87.62%), Postives = 188/202 (93.07%), Query Frame = 0


Query: 1   MTMESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           M M S+HHRPR HRLLLDA+TT APSNGSRTRNSY NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCALRCSRRF+FETGGGTASRL A+GLKKSALR++PV VYGSE+GL IRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAGAEAGN 180
           ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQS SES  A+AGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 181 RPAGNSSASGQGEISITVDEIT 202
           RPAGN SASGQGEISI +D+I+
Sbjct: 181 RPAGNPSASGQGEISIPIDQIS 202

[Close]

BLAST of MELO3C020006.jh1 vs. ExPASy TrEMBL
Match: A0A6J1BZW4 (RING-H2 finger protein ATL74 OS=Momordica charantia OX=3673 GN=LOC111006761 PE=4 SV=1)

HSP 1 Score: 337 bits (864), Expect = 5.31e-116
Identity = 170/192 (88.54%), Postives = 178/192 (92.71%), Query Frame = 0


Query: 1   MTMESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           M M S+HHR R HR LLD D TA PSNG+RTR+SY+NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMASDHHRHRPHRFLLDGDATAPPSNGNRTRSSYSNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCALRCSRRFAFET GGT++RL A+GLKKSALRQIPVAVYGSE+GLEIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETAGGTSTRLAATGLKKSALRQIPVAVYGSESGLEIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAGAEAGN 180
           ICLGDFIAGEKIKVLPKCNH FHVRCIDTWLASHSSCPTCRQSLLEQQS SESA AEAGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHEFHVRCIDTWLASHSSCPTCRQSLLEQQSCSESAVAEAGN 180

Query: 181 RPAGNSSASGQG 192
           RPAGNSSA GQG
Sbjct: 181 RPAGNSSAGGQG 192

[Close]

BLAST of MELO3C020006.jh1 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 178.3 bits (451), Expect = 6.1e-45
Identity = 96/163 (58.90%), Postives = 114/163 (69.94%), Query Frame = 0


Query: 14  RLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCS 73
           RLLL+     AP+N +       N+  FDTNMVIILAALLCALICAL LNS +RC LR +
Sbjct: 3   RLLLEPQAN-APANANPKPKGGINDTYFDTNMVIILAALLCALICALSLNSALRCVLRIT 62

Query: 74  RRFAFETGGGTASR--------LTASGLKKSALRQIPVAVYGSETGLEIRETDCPICLGD 133
           RRF  +     AS           A+GLKK AL+QIPV +YGS   ++++ T+C ICLGD
Sbjct: 63  RRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGSGI-IDMKATECLICLGD 122

Query: 134 FIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQ 169
           F  GEK++VLPKCNHGFHVRCIDTWL S SSCPTCRQSLL +Q
Sbjct: 123 FEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQ 163

[Close]

BLAST of MELO3C020006.jh1 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 176.0 bits (445), Expect = 3.0e-44
Identity = 88/149 (59.06%), Postives = 109/149 (73.15%), Query Frame = 0


Query: 21  TTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFET 80
           T A P     + ++  N A+ DT+MVIILAALLCALICALG+NS++RC LRC+RRF    
Sbjct: 17  TDANPRTLGDSVSNNKNIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNE 76

Query: 81  GGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFIAGEKIKVLPKCNH 140
                +   A G+KK AL+ IPV  Y  E  L+++ T+C ICLGDF+ GE ++VLPKCNH
Sbjct: 77  DPVDTNANVAKGIKKRALKVIPVDSYSPE--LKMKATECLICLGDFVEGETVRVLPKCNH 136

Query: 141 GFHVRCIDTWLASHSSCPTCRQSLLEQQS 170
           GFHV+CIDTWL SHSSCPTCRQSLLE Q+
Sbjct: 137 GFHVKCIDTWLLSHSSCPTCRQSLLEHQT 163

[Close]

BLAST of MELO3C020006.jh1 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein )

HSP 1 Score: 169.1 bits (427), Expect = 3.7e-42
Identity = 85/154 (55.19%), Postives = 107/154 (69.48%), Query Frame = 0


Query: 13  HRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRC 72
           HRLLL++      ++GS   + Y  + NFD NMVIILAALLCALI ALGLNSI+RCA+RC
Sbjct: 2   HRLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRC 61

Query: 73  SRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFIAGEKI 132
               +     GT +    +GLKK  L++ PVA YGS   ++I  T+C ICLG+F  GE++
Sbjct: 62  GFGLSSSAAAGTVA--DRAGLKKRELKKFPVAEYGSGE-VKIAATECAICLGEFADGERV 121

Query: 133 KVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLE 167
           +VLP CNH FH+ CIDTWL SHSSCP CR SL+E
Sbjct: 122 RVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIE 152

[Close]

BLAST of MELO3C020006.jh1 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 159.5 bits (402), Expect = 2.9e-39
Identity = 77/150 (51.33%), Postives = 101/150 (67.33%), Query Frame = 0


Query: 18  DADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFA 77
           D   T APS        Y  + NFD N+V++L+ LLCAL+C+LGLNSI+RCALRCS    
Sbjct: 36  DQSPTPAPS-------PYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVP 95

Query: 78  FETGGGT-ASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFIAGEKIKVLP 137
            E GG     RLT +G+K+ AL+      Y +E  L   +T+C ICL +F+A E++K+LP
Sbjct: 96  SEAGGDNYPVRLTNTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLP 155

Query: 138 KCNHGFHVRCIDTWLASHSSCPTCRQSLLE 167
            C+HGFHVRCID WL+SHSSCPTCR  L++
Sbjct: 156 TCHHGFHVRCIDKWLSSHSSCPTCRHCLIQ 178

[Close]

BLAST of MELO3C020006.jh1 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein )

HSP 1 Score: 135.2 bits (339), Expect = 5.9e-32
Identity = 64/133 (48.12%), Postives = 86/133 (64.66%), Query Frame = 0


Query: 37  NEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGTASRLTAS---GL 96
           +E N   N++++L+ L+C +IC LGL+ I+RCALR S RF       + S    S   G+
Sbjct: 50  HENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKGI 109

Query: 97  KKSALRQIPVAVYGSETGLEIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLAS 156
           KK ALR  PV  Y  E  L   + +C ICL DF++GE++++LPKCNHGFHVRCID WL  
Sbjct: 110 KKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQ 169

Query: 157 HSSCPTCRQSLLE 167
           H +CP CR  L+E
Sbjct: 170 HLTCPKCRNCLVE 182

The following BLAST results are available for this feature:

BLAST of MELO3C020006.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052006.1	1.11e-137	99.50	RING-H2 finger protein ATL72 [Cucumis melo var. makuwa] >TYK04553.1 RING-H2 fing...	[more]
XP_023550807.1	2.54e-123	88.12	RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo] >XP_023550808.1 R...	[more]
XP_038885444.1	4.04e-123	94.79	RING-H2 finger protein ATL74-like [Benincasa hispida]	[more]
XP_011656436.1	4.32e-123	94.27	RING-H2 finger protein ATL72 [Cucumis sativus] >KAE8646578.1 hypothetical protei...	[more]
XP_022938777.1	1.04e-122	87.62	RING-H2 finger protein ATL74-like [Cucurbita moschata]	[more]

BLAST of MELO3C020006.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SG96	8.5e-44	58.90	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]
Q9FLC6	4.2e-43	59.06	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]
Q9LZV8	5.2e-41	55.19	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]
Q6NQG7	4.1e-38	51.33	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]
P0C034	8.3e-31	48.12	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1	[more]

BLAST of MELO3C020006.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BXT6	5.36e-138	99.50	RING-H2 finger protein ATL72 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A0A0KAH2	9.84e-130	94.06	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G014550 P...	[more]
A0A6J1FF16	5.01e-123	87.62	RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111444892 ...	[more]
A0A6J1JVF4	7.12e-123	87.62	RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111489233 PE...	[more]
A0A6J1BZW4	5.31e-116	88.54	RING-H2 finger protein ATL74 OS=Momordica charantia OX=3673 GN=LOC111006761 PE=4...	[more]

BLAST of MELO3C020006.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10910.1	6.1e-45	58.90	RING/U-box superfamily protein	[more]
AT5G05280.1	3.0e-44	59.06	RING/U-box superfamily protein	[more]
AT5G01880.1	3.7e-42	55.19	RING/U-box superfamily protein	[more]
AT1G49230.1	2.9e-39	51.33	RING/U-box superfamily protein	[more]
AT1G49220.1	5.9e-32	48.12	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 119..160 e-value: 1.0E-7 score: 41.7
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 118..161 e-value: 2.3E-13 score: 50.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 119..161 score: 12.1057
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 83..166 e-value: 1.1E-22 score: 81.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..202
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 13..184
None	No IPR available	PANTHER	PTHR45798:SF44	RING-H2 FINGER PROTEIN ATL74	coord: 13..184
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 118..161 e-value: 4.03327E-17 score: 69.6381
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 113..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020006.jh1.t1	MELO3C020006.jh1.t1	mRNA
MELO3C020006.jh1.t2	MELO3C020006.jh1.t2	mRNA