MELO3C019268.1 (mRNA) Melon (DHL92) v4

Overview
NameMELO3C019268.1
TypemRNA
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr11: 10288540 .. 10288725 (-)
Sequence length186
RNA-Seq ExpressionMELO3C019268.1
SyntenyMELO3C019268.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGTTCATCAAGGGCCCCTAACCACTTATGGACAAAAGAGGAGGACGCAACCTTCGTGGAATGCCTGGTGGAGTTGGTCAACAACGATGGTTGGCGATCCGACAATGGAACCTTTAGACCTGAGTACCATAGTCAGCTTGCAAGAATGATGGCTCAGAAGATGCCAGGTTGTAACATATAG

mRNA sequence

ATGGCAAGTTCATCAAGGGCCCCTAACCACTTATGGACAAAAGAGGAGGACGCAACCTTCGTGGAATGCCTGGTGGAGTTGGTCAACAACGATGGTTGGCGATCCGACAATGGAACCTTTAGACCTGAGTACCATAGTCAGCTTGCAAGAATGATGGCTCAGAAGATGCCAGGTTGTAACATATAG

Coding sequence (CDS)

ATGGCAAGTTCATCAAGGGCCCCTAACCACTTATGGACAAAAGAGGAGGACGCAACCTTCGTGGAATGCCTGGTGGAGTTGGTCAACAACGATGGTTGGCGATCCGACAATGGAACCTTTAGACCTGAGTACCATAGTCAGCTTGCAAGAATGATGGCTCAGAAGATGCCAGGTTGTAACATATAG

Protein sequence

MASSSRAPNHLWTKEEDATFVECLVELVNNDGWRSDNGTFRPEYHSQLARMMAQKMPGCNI
Homology
BLAST of MELO3C019268.1 vs. NCBI nr
Match: TYK24214.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 126.3 bits (316), Expect = 8.9e-26
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 1  MASSSRAPNHLWTKEEDATFVECLVELVNNDGWRSDNGTFRPEYHSQLARMMAQKMP 58
          MASSSRAPNHLWTKEEDATFVECLVELVNNDGWRSDNGTFRPEYHSQLARMMAQKMP
Sbjct: 1  MASSSRAPNHLWTKEEDATFVECLVELVNNDGWRSDNGTFRPEYHSQLARMMAQKMP 57

BLAST of MELO3C019268.1 vs. NCBI nr
Match: KAA0047075.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 2.8e-19
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 0

Query: 1  MASSSRAPNHLWTKEEDATFVECLVELVNNDGWRSDNGTFRPEYHSQLARMMAQKMPGCN 60
          MASSSR P H WTKEE+A+ VECLVELVN  GWRSDNGTFRP Y +QL RMMA K+PGCN
Sbjct: 1  MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCN 60

Query: 61 I 62
          I
Sbjct: 61 I 61

BLAST of MELO3C019268.1 vs. NCBI nr
Match: TYK05082.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 2.8e-19
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 0

Query: 1  MASSSRAPNHLWTKEEDATFVECLVELVNNDGWRSDNGTFRPEYHSQLARMMAQKMPGCN 60
          MASSSR P H WTKEE+A+ VECLVELVN  GWRSDNGTFRP Y +QL RMMA K+PGCN
Sbjct: 1  MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCN 60

Query: 61 I 62
          I
Sbjct: 61 I 61

BLAST of MELO3C019268.1 vs. NCBI nr
Match: KAA0026116.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 103.6 bits (257), Expect = 6.2e-19
Identity = 47/61 (77.05%), Postives = 50/61 (81.97%), Query Frame = 0

Query: 1  MASSSRAPNHLWTKEEDATFVECLVELVNNDGWRSDNGTFRPEYHSQLARMMAQKMPGCN 60
          M SSSR P H WTKEE+A  VECLVELVN  GWRSDNGTFRP Y +QLARMMA K+PGCN
Sbjct: 1  MTSSSRLPKHTWTKEEEAGLVECLVELVNPGGWRSDNGTFRPGYLNQLARMMAFKIPGCN 60

Query: 61 I 62
          I
Sbjct: 61 I 61

BLAST of MELO3C019268.1 vs. NCBI nr
Match: KAA0036555.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 103.6 bits (257), Expect = 6.2e-19
Identity = 46/61 (75.41%), Postives = 51/61 (83.61%), Query Frame = 0

Query: 1  MASSSRAPNHLWTKEEDATFVECLVELVNNDGWRSDNGTFRPEYHSQLARMMAQKMPGCN 60
          MASSSR P H WTKEE+A+ +ECLVELVN  GWRSDNGTFRP Y +QLARMM  K+PGCN
Sbjct: 1  MASSSRLPKHTWTKEEEASLMECLVELVNAGGWRSDNGTFRPGYLNQLARMMVFKIPGCN 60

Query: 61 I 62
          I
Sbjct: 61 I 61

BLAST of MELO3C019268.1 vs. ExPASy TrEMBL
Match: A0A5D3DKT3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00160 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.3e-26
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 1  MASSSRAPNHLWTKEEDATFVECLVELVNNDGWRSDNGTFRPEYHSQLARMMAQKMP 58
          MASSSRAPNHLWTKEEDATFVECLVELVNNDGWRSDNGTFRPEYHSQLARMMAQKMP
Sbjct: 1  MASSSRAPNHLWTKEEDATFVECLVELVNNDGWRSDNGTFRPEYHSQLARMMAQKMP 57

BLAST of MELO3C019268.1 vs. ExPASy TrEMBL
Match: A0A5D3C1M0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00570 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.3e-19
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 0

Query: 1  MASSSRAPNHLWTKEEDATFVECLVELVNNDGWRSDNGTFRPEYHSQLARMMAQKMPGCN 60
          MASSSR P H WTKEE+A+ VECLVELVN  GWRSDNGTFRP Y +QL RMMA K+PGCN
Sbjct: 1  MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCN 60

Query: 61 I 62
          I
Sbjct: 61 I 61

BLAST of MELO3C019268.1 vs. ExPASy TrEMBL
Match: A0A5A7U098 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold466G00330 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.3e-19
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 0

Query: 1  MASSSRAPNHLWTKEEDATFVECLVELVNNDGWRSDNGTFRPEYHSQLARMMAQKMPGCN 60
          MASSSR P H WTKEE+A+ VECLVELVN  GWRSDNGTFRP Y +QL RMMA K+PGCN
Sbjct: 1  MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCN 60

Query: 61 I 62
          I
Sbjct: 61 I 61

BLAST of MELO3C019268.1 vs. ExPASy TrEMBL
Match: A0A5D3BKP9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold8202G00010 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.0e-19
Identity = 47/61 (77.05%), Postives = 50/61 (81.97%), Query Frame = 0

Query: 1  MASSSRAPNHLWTKEEDATFVECLVELVNNDGWRSDNGTFRPEYHSQLARMMAQKMPGCN 60
          M SSSR P H WTKEE+A  VECLVELVN  GWRSDNGTFRP Y +QLARMMA K+PGCN
Sbjct: 1  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCN 60

Query: 61 I 62
          I
Sbjct: 61 I 61

BLAST of MELO3C019268.1 vs. ExPASy TrEMBL
Match: A0A5A7TUJ7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G00240 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.0e-19
Identity = 47/61 (77.05%), Postives = 50/61 (81.97%), Query Frame = 0

Query: 1  MASSSRAPNHLWTKEEDATFVECLVELVNNDGWRSDNGTFRPEYHSQLARMMAQKMPGCN 60
          M SSSR P H WTKEE+A  VECLVELVN  GWRSDNGTFRP Y +QLARMMA K+PGCN
Sbjct: 1  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCN 60

Query: 61 I 62
          I
Sbjct: 61 I 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK24214.18.9e-26100.00retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0047075.12.8e-1977.05retrotransposon protein [Cucumis melo var. makuwa][more]
TYK05082.12.8e-1977.05retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0026116.16.2e-1977.05retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0036555.16.2e-1975.41retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DKT34.3e-26100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3C1M01.3e-1977.05Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U0981.3e-1977.05Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BKP93.0e-1977.05Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TUJ73.0e-1977.05Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 3..60
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 3..60

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C019268MELO3C019268gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C019268.1:exon:317497MELO3C019268.1:exon:317497exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C019268.1:cdsMELO3C019268.1:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C019268.1MELO3C019268.1-proteinpolypeptide