MELO3C016146.1 (mRNA) Melon (DHL92) v4

Overview
NameMELO3C016146.1
TypemRNA
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
Descriptionglycine-rich protein 5-like
Locationchr07: 19491221 .. 19491615 (-)
Sequence length395
RNA-Seq ExpressionMELO3C016146.1
SyntenyMELO3C016146.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAACTTATGGCATCGTTCTTATAGCTTGTGGGTCTGTGATAGCGGCTGTGATGATTTTATGGTGTGTTTGTAAGTTTGGAAGAAGTCGTAAAAAGAAGACAATTACATATAATATACCCAAACCCACTCCACAAAGGAGCCTTGATATTGAACGTGGCCAATTACCTAAGAACAATAATAATGGTGGGATGACTATTCTTGGTGGAGCAGCTGCGGGTTTAGCTACAGCTGCTGTTGTAACCAATTTAAGCAGCAGTGGCGGTGGCGGTGGTGGAGGAGATTCTGGTAGTGGTGATGGCGGCGGTGGGGGATGTGGCGGTGGAGGCTGCGGTGGCTGCGGAGGTGGCTGTGGAGGTGGCTGTGGATGAGGTGGAGGTTGATGTATAAGTGA

mRNA sequence

ATGGAAACTTATGGCATCGTTCTTATAGCTTGTGGGTCTGTGATAGCGGCTGTGATGATTTTATGGTGTGTTTGTAAGTTTGGAAGAAGTCGTAAAAAGAAGACAATTACATATAATATACCCAAACCCACTCCACAAAGGAGCCTTGATATTGAACGTGGCCAATTACCTAAGAACAATAATAATGGTGGGATGACTATTCTTGGTGGAGCAGCTGCGGGTTTAGCTACAGCTGCTGTTGTAACCAATTTAAGCAGCAGTGGCGGTGGCGGTGGTGGAGGAGATTCTGGTAGTGGTGATGGCGGCGGTGGGGGATGTGGCGGTGGAGGCTGCGGTGGCTGCGGAGGTGGCTGTGGAGGTGGCTGTGGATGAGGTGGAGGTTGATGTATAAGTGA

Coding sequence (CDS)

ATGGAAACTTATGGCATCGTTCTTATAGCTTGTGGGTCTGTGATAGCGGCTGTGATGATTTTATGGTGTGTTTGTAAGTTTGGAAGAAGTCGTAAAAAGAAGACAATTACATATAATATACCCAAACCCACTCCACAAAGGAGCCTTGATATTGAACGTGGCCAATTACCTAAGAACAATAATAATGGTGGGATGACTATTCTTGGTGGAGCAGCTGCGGGTTTAGCTACAGCTGCTGTTGTAACCAATTTAAGCAGCAGTGGCGGTGGCGGTGGTGGAGGAGATTCTGGTAGTGGTGATGGCGGCGGTGGGGGATGTGGCGGTGGAGGCTGCGGTGGCTGCGGAGGTGGCTGTGGAGGTGGCTGTGGATGA

Protein sequence

METYGIVLIACGSVIAAVMILWCVCKFGRSRKKKTITYNIPKPTPQRSLDIERGQLPKNNNNGGMTILGGAAAGLATAAVVTNLSSSGGGGGGGDSGSGDGGGGGCGGGGCGGCGGGCGGGCG
Homology
BLAST of MELO3C016146.1 vs. NCBI nr
Match: KGN53550.1 (hypothetical protein Csa_015259 [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 4.8e-39
Identity = 110/125 (88.00%), Postives = 113/125 (90.40%), Query Frame = 0

Query: 1   METYGIVLIACGSVIAAVMILWCVCKFGRSRKKKTITYNIPKPTPQRSLDIERGQLPKNN 60
           M+TY IVLIA GSVI AVMILWCVCKFGRSRKKKTITYN+PK TPQR+LDIERGQLPKNN
Sbjct: 1   MKTYAIVLIAGGSVIGAVMILWCVCKFGRSRKKKTITYNMPKRTPQRNLDIERGQLPKNN 60

Query: 61  NNGGMTILGGAAAGLATAAVVTNLSSSGGGGGG--GDSGSGDGGGGGCGGGGCGGCGGGC 120
           NNGGMTILGGAAAGLATAAVVT LSSSGGGGGG  G  G GDGGGGG  GGGCGGCGGGC
Sbjct: 61  NNGGMTILGGAAAGLATAAVVTTLSSSGGGGGGDSGSGGDGDGGGGGGCGGGCGGCGGGC 120

Query: 121 GGGCG 124
           GGGCG
Sbjct: 121 GGGCG 125

BLAST of MELO3C016146.1 vs. NCBI nr
Match: XP_023552868.1 (glycine-rich protein DOT1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 111.3 bits (277), Expect = 5.9e-21
Identity = 84/131 (64.12%), Postives = 96/131 (73.28%), Query Frame = 0

Query: 1   METYGIVLIACGSVIAAVMILWCVCKFGRSRKKK----TITYNIPKPTPQRSLDIERGQL 60
           M TY IVLI CG VIA+ +ILWCVC +G  +KKK    T T +  +PTP+ S D+E G+ 
Sbjct: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60

Query: 61  PKNNNNGGMTILGGAAAGLATAAVVTNLSSSGGGGGGGDSGSGDG----GGGGCGGGGCG 120
                NGGMTIL GAAAGLATAAVVT+LS+ GGGGGGG+ G GDG    GGGGCGGG  G
Sbjct: 61  ----KNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGGEEGGGDGGGGDGGGGCGGGCGG 120

Query: 121 GCGGGCGGGCG 124
           GCGGGCGGGCG
Sbjct: 121 GCGGGCGGGCG 127

BLAST of MELO3C016146.1 vs. NCBI nr
Match: XP_038889436.1 (acanthoscurrin-1-like [Benincasa hispida])

HSP 1 Score: 110.9 bits (276), Expect = 7.8e-21
Identity = 87/125 (69.60%), Postives = 96/125 (76.80%), Query Frame = 0

Query: 1   METYGIVLIACGSVIAAVMILWCVCKFGRSRKKKTITYNIPKPTPQRSLDIERGQLPKNN 60
           M+TYGIVLI CGSVIA +MIL CVCKFG  +  KT+TY IP    QR+ D+ERGQ   N 
Sbjct: 1   MKTYGIVLITCGSVIAGIMILRCVCKFGGRKIMKTVTY-IPNAASQRNPDLERGQ--PNK 60

Query: 61  NNGGMTILGGAAAGLATAAVVTNLSSSGGGGGGGDSGSGDGG--GGGCGGGGCGGCGGGC 120
           NNGG+TIL GAAAGLATAAVVTNL +   GGGGG  G G+GG  GGGCGGGGCG  GGGC
Sbjct: 61  NNGGITILAGAAAGLATAAVVTNLGNDDTGGGGG-CGGGEGGDSGGGCGGGGCG--GGGC 119

Query: 121 GGGCG 124
           GGGCG
Sbjct: 121 GGGCG 119

BLAST of MELO3C016146.1 vs. NCBI nr
Match: KAG6577050.1 (hypothetical protein SDJN03_24624, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-20
Identity = 83/130 (63.85%), Postives = 96/130 (73.85%), Query Frame = 0

Query: 1   METYGIVLIACGSVIAAVMILWCVCKFGRSRKKK----TITYNIPKPTPQRSLDIERGQL 60
           M TY IVLI CG VIA+ +ILWCVC +G  +KKK    T T +  +PTP+ S D+E G+ 
Sbjct: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60

Query: 61  PKNNNNGGMTILGGAAAGLATAAVVTNLSS---SGGGGGGGDSGSGDGGGGGCGGGGCGG 120
                NGGMTIL GAAAGLATAAVVT+L++    GGGGGGG+ G GDGGGGGCGGG  GG
Sbjct: 61  ----KNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGGGGEEGGGDGGGGGCGGGCGGG 120

Query: 121 CGGGCGGGCG 124
           CGGGCGGGCG
Sbjct: 121 CGGGCGGGCG 126

BLAST of MELO3C016146.1 vs. NCBI nr
Match: XP_022931328.1 (glycine-rich protein 5-like [Cucurbita moschata])

HSP 1 Score: 105.5 bits (262), Expect = 3.3e-19
Identity = 83/132 (62.88%), Postives = 96/132 (72.73%), Query Frame = 0

Query: 1   METYGIVLIACGSVIAAVMILWCVCKFGRSRKKK----TITYNIPKPTPQRSLDIERGQL 60
           M TY IVLI CG VIA+ +ILWCVC +G  +KKK    T T +  +PTP+ S D+E G+ 
Sbjct: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60

Query: 61  PKNNNNGGMTILGGAAAGLATAAVVTNLSS-SGGGGGGGDSGSGDG----GGGGCGGGGC 120
                NGGMTIL GAAAGLATAAVVT+L++  GGGGGGG+ G GDG    GGGGCGGG  
Sbjct: 61  ----KNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGGEEGGGDGSGGDGGGGCGGGCG 120

Query: 121 GGCGGGCGGGCG 124
           GGCGGGCGGGCG
Sbjct: 121 GGCGGGCGGGCG 128

BLAST of MELO3C016146.1 vs. ExPASy TrEMBL
Match: A0A0A0KVE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G081280 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.3e-39
Identity = 110/125 (88.00%), Postives = 113/125 (90.40%), Query Frame = 0

Query: 1   METYGIVLIACGSVIAAVMILWCVCKFGRSRKKKTITYNIPKPTPQRSLDIERGQLPKNN 60
           M+TY IVLIA GSVI AVMILWCVCKFGRSRKKKTITYN+PK TPQR+LDIERGQLPKNN
Sbjct: 1   MKTYAIVLIAGGSVIGAVMILWCVCKFGRSRKKKTITYNMPKRTPQRNLDIERGQLPKNN 60

Query: 61  NNGGMTILGGAAAGLATAAVVTNLSSSGGGGGG--GDSGSGDGGGGGCGGGGCGGCGGGC 120
           NNGGMTILGGAAAGLATAAVVT LSSSGGGGGG  G  G GDGGGGG  GGGCGGCGGGC
Sbjct: 61  NNGGMTILGGAAAGLATAAVVTTLSSSGGGGGGDSGSGGDGDGGGGGGCGGGCGGCGGGC 120

Query: 121 GGGCG 124
           GGGCG
Sbjct: 121 GGGCG 125

BLAST of MELO3C016146.1 vs. ExPASy TrEMBL
Match: A0A6J1EY84 (glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111437551 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.6e-19
Identity = 83/132 (62.88%), Postives = 96/132 (72.73%), Query Frame = 0

Query: 1   METYGIVLIACGSVIAAVMILWCVCKFGRSRKKK----TITYNIPKPTPQRSLDIERGQL 60
           M TY IVLI CG VIA+ +ILWCVC +G  +KKK    T T +  +PTP+ S D+E G+ 
Sbjct: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60

Query: 61  PKNNNNGGMTILGGAAAGLATAAVVTNLSS-SGGGGGGGDSGSGDG----GGGGCGGGGC 120
                NGGMTIL GAAAGLATAAVVT+L++  GGGGGGG+ G GDG    GGGGCGGG  
Sbjct: 61  ----KNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGGEEGGGDGSGGDGGGGCGGGCG 120

Query: 121 GGCGGGCGGGCG 124
           GGCGGGCGGGCG
Sbjct: 121 GGCGGGCGGGCG 128

BLAST of MELO3C016146.1 vs. ExPASy TrEMBL
Match: A0A6J1J409 (glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111483210 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 4.6e-19
Identity = 83/128 (64.84%), Postives = 94/128 (73.44%), Query Frame = 0

Query: 1   METYGIVLIACGSVIAAVMILWCVCKFGRSRKKK----TITYNIPKPTPQRSLDIERGQL 60
           M TY IVLI  G VIA+ +ILWCVC +G  +KKK    T T +  +PTP+ S D+E G+ 
Sbjct: 1   MRTYAIVLITSGCVIASAVILWCVCSYGGRKKKKTAPPTYTSSALRPTPRPSRDLELGEA 60

Query: 61  PKNNNNGGMTILGGAAAGLATAAVVTNLSSSGGGGGGGDSGSGDGGGGGCGGGGC-GGCG 120
                NGGMTIL GAAAGLATAAVVT+LS+ GGGGGGG  G GD GGGG GGGGC GGCG
Sbjct: 61  ----KNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGGGEG-GDDGGGGDGGGGCGGGCG 120

Query: 121 GGCGGGCG 124
           GGCGGGCG
Sbjct: 121 GGCGGGCG 123

BLAST of MELO3C016146.1 vs. ExPASy TrEMBL
Match: A0A1S3YHZ0 (zinc finger protein ZIC 2-like OS=Nicotiana tabacum OX=4097 GN=LOC107776358 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 6.0e-11
Identity = 72/132 (54.55%), Postives = 88/132 (66.67%), Query Frame = 0

Query: 1   METYGIVLIACGSVIAAVMILWCVCKFGRSRKKKTITYNI-----PKPTPQRSLDIERGQ 60
           M+ Y I LI CGSV A V+IL C+CK GR +K +  T N+     P P  Q + D+E+G+
Sbjct: 1   MKAYAIALIVCGSVAALVLILCCLCKGGRKKKSQPATRNVTGFAPPPPPLQANRDVEKGE 60

Query: 61  L-PKN---NNNGGMTILGGAAAGLATAAVVTNLSSSGGGGGGGDSGSGDGGGGGCGGGGC 120
           + PK+     +GGM ILG  AA +ATAAV+T  S+  GGGGGG SGSG GGG G GGGGC
Sbjct: 61  ITPKSTAVTKDGGMVILGATAATVATAAVIT--SAYSGGGGGGTSGSGGGGGCGSGGGGC 120

Query: 121 GGCGGGCGGGCG 124
           GG GG  GGGCG
Sbjct: 121 GGGGGCGGGGCG 130

BLAST of MELO3C016146.1 vs. ExPASy TrEMBL
Match: A0A1U7W9C4 (zinc finger protein ZIC 2-like OS=Nicotiana sylvestris OX=4096 GN=LOC104221816 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 6.0e-11
Identity = 73/132 (55.30%), Postives = 89/132 (67.42%), Query Frame = 0

Query: 1   METYGIVLIACGSVIAAVMILWCVCKFGRSRKKKTITYNI-----PKPTPQRSLDIERGQ 60
           M+ Y I LI CGSV A V+IL C+CK GR +K +  T N+     P P  Q + D+E+G+
Sbjct: 1   MKAYAIALIVCGSVAALVLILCCLCKGGRKKKSQPATRNVTGFAPPPPPLQANRDVEKGE 60

Query: 61  L-PKN---NNNGGMTILGGAAAGLATAAVVTNLSSSGGGGGGGDSGSGDGGGGGCGGGGC 120
           + PK+     +GGM ILG  AA +ATAAV+T  S+  GGGGGG SGSG GGG G GGGGC
Sbjct: 61  ITPKSTAVTKDGGMVILGATAATVATAAVIT--SAYSGGGGGGTSGSGGGGGCGSGGGGC 120

Query: 121 GGCGGGCGGGCG 124
           GG GGGC GGCG
Sbjct: 121 GG-GGGC-GGCG 128

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN53550.14.8e-3988.00hypothetical protein Csa_015259 [Cucumis sativus][more]
XP_023552868.15.9e-2164.12glycine-rich protein DOT1-like [Cucurbita pepo subsp. pepo][more]
XP_038889436.17.8e-2169.60acanthoscurrin-1-like [Benincasa hispida][more]
KAG6577050.11.0e-2063.85hypothetical protein SDJN03_24624, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022931328.13.3e-1962.88glycine-rich protein 5-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KVE12.3e-3988.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G081280 PE=4 SV=1[more]
A0A6J1EY841.6e-1962.88glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111437551 PE=4 S... [more]
A0A6J1J4094.6e-1964.84glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111483210 PE=4 SV=... [more]
A0A1S3YHZ06.0e-1154.55zinc finger protein ZIC 2-like OS=Nicotiana tabacum OX=4097 GN=LOC107776358 PE=4... [more]
A0A1U7W9C46.0e-1155.30zinc finger protein ZIC 2-like OS=Nicotiana sylvestris OX=4096 GN=LOC104221816 P... [more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C016146MELO3C016146gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C016146.1:exon:215720MELO3C016146.1:exon:215720exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C016146.1:three_prime_utrMELO3C016146.1:three_prime_utrthree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C016146.1:cdsMELO3C016146.1:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C016146.1MELO3C016146.1-proteinpolypeptide