MELO3C012038.jh1.t2 (mRNA) Melon (Harukei-3) v1.41

Overview
NameMELO3C012038.jh1.t2
TypemRNA
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Descriptionprotein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic
Locationchr10: 3120487 .. 3122662 (+)
Sequence length1357
RNA-Seq ExpressionMELO3C012038.jh1.t2
SyntenyMELO3C012038.jh1.t2
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGGCATAATTAAGCAAATTGCACTGCAGCTCGAAGTTGAACCCAAGTGCTCGAGCGCGGGCGGTGGGTTGTCTCCCCTTGGGCTTGAGTCCAGATCCCGGCAAATTAGTTAATTATCGTTGTACTTCGTTGCAATGGAAGCGGGAATTTTCTTCGCCGTCACTCCAATTCCATGGACTTCCAATTTCAAGCGCACTCACTCTTCCCTTCGTCGTTCTTTCCCGCGTATCATAAGGGCTTCTTCTTCCACTTCACAGCGAAGTTACAGGGGCCCGAAGCCTTCAACTGATTTGGTGGCCGATTGGGTGTCCAACAACGATGATACCGTTCGGAGTTCGCCCATTTACGTCGGTGGAATTTCTCTCTTGCTCGTGCTCTTTAATCGCGCCGTTTCCGGCATTGCTCCCGTCGCCGATGCCAGCAGGTTCGTTCAAGTTAAACCAATTTATCCATTATCGAATGCTGTTTACTTCCACTAGTCAATTTGTATTTGCTTTTTCTGGAATATTATAAATGCATCGCTATAATTAGTTTTAAATTGAGAGAAGAAATCAATAATTCGTTGAGGCAAGAATGGAAATTCTAATCTTCGATAATGGTGCTTTCCTAATTTGGTGGGATTGTTCTGCAAATAATATTTGCTTTGAGCTTGTTCTTTACGTAATTGGTTGTTCTATTTATATTGATGAACTTTTTTAATTCCGGCAGTTCACAGTCAAGAGCTGATCTGTTAACCCTAGGACTTGCTGTTACGAATGTCTTGGCTGGTTTGGTGTGGCTGTCGATCAGGCCGAAATCTATAACACCGGTGAGGAGTTTACGATAAGATTTTCATACTTAACCTCTCCTCTCTCGCTGCAACAATCAGCTCAGGAGTAGCCTGTTTCTACTTATTTTCTTATTTGTTACCCCTAATTTCATTTTCCGTATCAGGTAAATCCACTAGGAGTAGAATATGAGTGGATTTGCTCCAGTCTCCCTGATCGTGTAACATCTGAGTTGTTATGGTAAAGACTATAGAATTTTCCTCTATGATATTTTAAAACTGTGTCGCTAAGATCATTGAAAATCACCTTTTGATACTTGGGATGTTTGGTTGGCTTAGTTAATGGAGATTGATGAGCGAAACATGATGGTTTTGGAATTGTATAATCCATATGTCATTTTGTCTCCCCTCATTGTCACATGATCGTGCAAATTTTTAATGATGGAGAAAGCCAACTTCATATGCCATGTATCTCATAAAAAGGGAAATCCTGGACTAGGTGGTAAATGGTTACTTTTTGCTGCCATTACGTAGGGTATGGAAGTCTCTGTCAGAAGTAACATGCTGCCGGTCTCTGGTTGTTGTTTATGATGGCAAGTGTATACTTCAAGTTGGTTTTGCTGCTGAATCAGCCGAGGGTGATGGTGAGGCTGAACGTGTTGAAGCTGGTAAACTGATGCAGGGATTGCTCTATAAGGGAGTCCTCAAATCTCAAGCTCGTGAGTAGTAAATGACCTGTGCACAGAGACCATCACAGAATGTACTACTTGATTGCCGTGCAGTTGTAAATATCTGTAACCATTCGTTTTGAGAAACTATCCTTCCTATTTCTGCAGAGAGCTACTTGGCCAATCTCTCTCTTTATCCAGGGAAGTCGGAGCTGCCATTTCTTCCCTCAAATACTCAGGTACTTTGCTTAATACTATCCAGGTCGCTGTTAGATTTGTTCCTTTTTTCTGTTTTCTTATCTTTCTAGAATAATCAACTGGTACACAGCTTTACAGTGCTTCATTTTTTGGCATTTATTACTCTTATAAATAATATAACTAGCAGACATATAAACTAATTGGGAGTTCAGAGGTCTTTTCTATGCCCACTTACTCTTCTTGTTCGTTGGAACGAGGGTCTGCTACTCGGTAAAGTACAGAGGAATGAGATAAATTTTTCTATTCAATTTGTATTTTTTGAGGTTCTATCAGTTAAATAGGATTTATTTCCTCACTTGGTTACTTATGGGCTTCCTTATTTGGAAGGCGGTAGCCAATTTAATACCTGAAAACTTGGAATTTTGTCAGTCCTAAGAGACTGTAGCTGGTCTGTTGATCTGTTTCTAATAAACTAATCGTCATTGAACTTGAGCTCCCTTGCTCACACTGTGTTTGTGAAGGTGGAATTATTTTCTTTAGAAGT

mRNA sequence

TAGGCATAATTAAGCAAATTGCACTGCAGCTCGAAGTTGAACCCAAGTGCTCGAGCGCGGGCGGTGGGTTGTCTCCCCTTGGGCTTGAGTCCAGATCCCGGCAAATTAGTTAATTATCGTTGTACTTCGTTGCAATGGAAGCGGGAATTTTCTTCGCCGTCACTCCAATTCCATGGACTTCCAATTTCAAGCGCACTCACTCTTCCCTTCGTCGTTCTTTCCCGCGTATCATAAGGGCTTCTTCTTCCACTTCACAGCGAAGTTACAGGGGCCCGAAGCCTTCAACTGATTTGGTGGCCGATTGGGTGTCCAACAACGATGATACCGTTCGGAGTTCGCCCATTTACGTCGGTGGAATTTCTCTCTTGCTCGTGCTCTTTAATCGCGCCGTTTCCGGCATTGCTCCCGTCGCCGATGCCAGCAGTTCACAGTCAAGAGCTGATCTGTTAACCCTAGGACTTGCTGTTACGAATGTCTTGGCTGGTTTGGTGTGGCTGTCGATCAGGCCGAAATCTATAACACCGGTAAATCCACTAGGAGTAGAATATGAGTGGATTTGCTCCAGTCTCCCTGATCGTGTAACATCTGAGTTGTTATGGGTATGGAAGTCTCTGTCAGAAGTAACATGCTGCCGGTCTCTGGTTGTTGTTTATGATGGCAAGTGTATACTTCAAGTTGGTTTTGCTGCTGAATCAGCCGAGGGTGATGGTGAGGCTGAACGTGTTGAAGCTGGTAAACTGATGCAGGGATTGCTCTATAAGGGAGTCCTCAAATCTCAAGCTCAGAGCTACTTGGCCAATCTCTCTCTTTATCCAGGGAAGTCGGAGCTGCCATTTCTTCCCTCAAATACTCAGGTACTTTGCTTAATACTATCCAGGTCGCTGTTAGATTTGTTCCTTTTTTCTGTTTTCTTATCTTTCTAGAATAATCAACTGGTACACAGCTTTACAGTGCTTCATTTTTTGGCATTTATTACTCTTATAAATAATATAACTAGCAGACATATAAACTAATTGGGAGTTCAGAGGTCTTTTCTATGCCCACTTACTCTTCTTGTTCGTTGGAACGAGGGTCTGCTACTCGGTAAAGTACAGAGGAATGAGATAAATTTTTCTATTCAATTTGTATTTTTTGAGGTTCTATCAGTTAAATAGGATTTATTTCCTCACTTGGTTACTTATGGGCTTCCTTATTTGGAAGGCGGTAGCCAATTTAATACCTGAAAACTTGGAATTTTGTCAGTCCTAAGAGACTGTAGCTGGTCTGTTGATCTGTTTCTAATAAACTAATCGTCATTGAACTTGAGCTCCCTTGCTCACACTGTGTTTGTGAAGGTGGAATTATTTTCTTTAGAAGT

Coding sequence (CDS)

ATGGAAGCGGGAATTTTCTTCGCCGTCACTCCAATTCCATGGACTTCCAATTTCAAGCGCACTCACTCTTCCCTTCGTCGTTCTTTCCCGCGTATCATAAGGGCTTCTTCTTCCACTTCACAGCGAAGTTACAGGGGCCCGAAGCCTTCAACTGATTTGGTGGCCGATTGGGTGTCCAACAACGATGATACCGTTCGGAGTTCGCCCATTTACGTCGGTGGAATTTCTCTCTTGCTCGTGCTCTTTAATCGCGCCGTTTCCGGCATTGCTCCCGTCGCCGATGCCAGCAGTTCACAGTCAAGAGCTGATCTGTTAACCCTAGGACTTGCTGTTACGAATGTCTTGGCTGGTTTGGTGTGGCTGTCGATCAGGCCGAAATCTATAACACCGGTAAATCCACTAGGAGTAGAATATGAGTGGATTTGCTCCAGTCTCCCTGATCGTGTAACATCTGAGTTGTTATGGGTATGGAAGTCTCTGTCAGAAGTAACATGCTGCCGGTCTCTGGTTGTTGTTTATGATGGCAAGTGTATACTTCAAGTTGGTTTTGCTGCTGAATCAGCCGAGGGTGATGGTGAGGCTGAACGTGTTGAAGCTGGTAAACTGATGCAGGGATTGCTCTATAAGGGAGTCCTCAAATCTCAAGCTCAGAGCTACTTGGCCAATCTCTCTCTTTATCCAGGGAAGTCGGAGCTGCCATTTCTTCCCTCAAATACTCAGGTACTTTGCTTAATACTATCCAGGTCGCTGTTAGATTTGTTCCTTTTTTCTGTTTTCTTATCTTTCTAG

Protein sequence

MEAGIFFAVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSNNDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVWLSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQVGFAAESAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQVLCLILSRSLLDLFLFSVFLSF
Homology
[Close]
BLAST of MELO3C012038.jh1.t2 vs. NCBI nr
Match: XP_008446278.1 (PREDICTED: protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucumis melo] >KAA0034354.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4 [Cucumis melo var. makuwa] >TYK15565.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4 [Cucumis melo var. makuwa])

HSP 1 Score: 474 bits (1219), Expect = 4.54e-167
Identity = 239/244 (97.95%), Postives = 240/244 (98.36%), Query Frame = 0 

Query: 1   MEAGIFFAVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60
           MEAGIFF VTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN
Sbjct: 1   MEAGIFFTVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60

Query: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW
Sbjct: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120

Query: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180
           LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ
Sbjct: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180

Query: 181 VGFAAESAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           VGFAAE AEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 VGFAAELAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

Query: 241 VLCL 244
            + L
Sbjct: 241 AVIL 244

[Close]
BLAST of MELO3C012038.jh1.t2 vs. NCBI nr
Match: KGN52433.2 (hypothetical protein Csa_009370 [Cucumis sativus])

HSP 1 Score: 439 bits (1130), Expect = 1.22e-153
Identity = 224/244 (91.80%), Postives = 230/244 (94.26%), Query Frame = 0 

Query: 1   MEAGIFFAVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60
           MEAGIFF +T IPWT NFKRTHSSLR SFP I+RASSSTSQRSYRGPKPST+LVADWVSN
Sbjct: 1   MEAGIFFPLTSIPWTFNFKRTHSSLRPSFPLIVRASSSTSQRSYRGPKPSTNLVADWVSN 60

Query: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           NDDTVRS PIYVGGISLL+VLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW
Sbjct: 61  NDDTVRSLPIYVGGISLLIVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120

Query: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180
           LSIRPKSITPVNPLGVE E ICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDG CI Q
Sbjct: 121 LSIRPKSITPVNPLGVENERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGTCIFQ 180

Query: 181 VGFAAESAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           VGFAAESAEG+GEAE VEAGKLMQG LYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 VGFAAESAEGNGEAEHVEAGKLMQGSLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

Query: 241 VLCL 244
            + L
Sbjct: 241 AVIL 244

[Close]
BLAST of MELO3C012038.jh1.t2 vs. NCBI nr
Match: XP_004135215.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucumis sativus])

HSP 1 Score: 439 bits (1130), Expect = 1.63e-153
Identity = 224/244 (91.80%), Postives = 230/244 (94.26%), Query Frame = 0 

Query: 1   MEAGIFFAVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60
           MEAGIFF +T IPWT NFKRTHSSLR SFP I+RASSSTSQRSYRGPKPST+LVADWVSN
Sbjct: 1   MEAGIFFPLTSIPWTFNFKRTHSSLRPSFPLIVRASSSTSQRSYRGPKPSTNLVADWVSN 60

Query: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           NDDTVRS PIYVGGISLL+VLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW
Sbjct: 61  NDDTVRSLPIYVGGISLLIVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120

Query: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180
           LSIRPKSITPVNPLGVE E ICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDG CI Q
Sbjct: 121 LSIRPKSITPVNPLGVENERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGTCIFQ 180

Query: 181 VGFAAESAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           VGFAAESAEG+GEAE VEAGKLMQG LYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 VGFAAESAEGNGEAEHVEAGKLMQGSLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

Query: 241 VLCL 244
            + L
Sbjct: 241 AVIL 244

[Close]
BLAST of MELO3C012038.jh1.t2 vs. NCBI nr
Match: XP_038892079.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 414 bits (1065), Expect = 1.74e-144
Identity = 213/240 (88.75%), Postives = 216/240 (90.00%), Query Frame = 0 

Query: 1   MEAGIFFAVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60
           MEAGIFF VTPI W+SNFKRTH  +RRSFPRIIR SSSTSQ SYRGPKPS D VADWVS 
Sbjct: 1   MEAGIFFPVTPILWSSNFKRTHCPVRRSFPRIIRVSSSTSQGSYRGPKPSRDWVADWVSK 60

Query: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           NDD VRS PIYVGGISLLLVLFNR VSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW
Sbjct: 61  NDDAVRSLPIYVGGISLLLVLFNRTVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120

Query: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180
           LSI+PKSITPVNP GV  E ICSSLPD V SELLWVW SLSEVTCCRSLVVVYDGKCI Q
Sbjct: 121 LSIKPKSITPVNPQGVACERICSSLPDIVKSELLWVWTSLSEVTCCRSLVVVYDGKCIFQ 180

Query: 181 VGFAAESAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           VGFAAESAEGDGEAE VEAGKLMQG LY G LKSQAQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 VGFAAESAEGDGEAEHVEAGKLMQGSLYTGNLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

[Close]
BLAST of MELO3C012038.jh1.t2 vs. NCBI nr
Match: XP_038892078.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 415 bits (1067), Expect = 6.36e-144
Identity = 214/244 (87.70%), Postives = 218/244 (89.34%), Query Frame = 0 

Query: 1   MEAGIFFAVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60
           MEAGIFF VTPI W+SNFKRTH  +RRSFPRIIR SSSTSQ SYRGPKPS D VADWVS 
Sbjct: 1   MEAGIFFPVTPILWSSNFKRTHCPVRRSFPRIIRVSSSTSQGSYRGPKPSRDWVADWVSK 60

Query: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           NDD VRS PIYVGGISLLLVLFNR VSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW
Sbjct: 61  NDDAVRSLPIYVGGISLLLVLFNRTVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120

Query: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180
           LSI+PKSITPVNP GV  E ICSSLPD V SELLWVW SLSEVTCCRSLVVVYDGKCI Q
Sbjct: 121 LSIKPKSITPVNPQGVACERICSSLPDIVKSELLWVWTSLSEVTCCRSLVVVYDGKCIFQ 180

Query: 181 VGFAAESAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           VGFAAESAEGDGEAE VEAGKLMQG LY G LKSQAQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 VGFAAESAEGDGEAEHVEAGKLMQGSLYTGNLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

Query: 241 VLCL 244
            + L
Sbjct: 241 AVIL 244

[Close]
BLAST of MELO3C012038.jh1.t2 vs. ExPASy Swiss-Prot
Match: Q6NQK9 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CCB4 PE=1 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 8.7e-81
Identity = 163/247 (65.99%), Postives = 192/247 (77.73%), Query Frame = 0 

Query: 1   MEAGIFFAVTPIPWTSNFKRTHSSLRRSFPRIIRA-SSSTSQ--RSYRGPKPSTDLVADW 60
           MEA I      IPW++N + +H  L   FPR IRA SSSTSQ  ++Y GPKP  +LVAD+
Sbjct: 1   MEARIILLRIQIPWSANRQFSHPPL--DFPRFIRASSSSTSQKPKTYEGPKPRKNLVADF 60

Query: 61  VSNNDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAG 120
           +S NDD VRS PIYVGG SLL VLFNR VSGIAPVADASSSQSRADLL LGLAVTN+L G
Sbjct: 61  ISKNDDLVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLALGLAVTNLLTG 120

Query: 121 LVWLSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKC 180
           LVWLSIRPKSITPVNP GVE + + S LP  + SELLW W+SL   TCC+SLV+VY+G C
Sbjct: 121 LVWLSIRPKSITPVNPKGVECKVVESDLPASMVSELLWAWESLKVATCCKSLVIVYNGIC 180

Query: 181 ILQVGFAAESAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPS 240
           ++Q+G  AES E D +   V+  KLMQG +Y+GV+KS+AQSYLANLSLYPG+SELPFLP+
Sbjct: 181 LIQIGMVAESPE-DKKTVIVKTDKLMQGSVYRGVMKSKAQSYLANLSLYPGRSELPFLPA 240

Query: 241 NTQVLCL 245
           NTQ + L
Sbjct: 241 NTQAVIL 244

[Close]
BLAST of MELO3C012038.jh1.t2 vs. ExPASy TrEMBL
Match: A0A5A7ST12 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00590 PE=4 SV=1)

HSP 1 Score: 474 bits (1219), Expect = 2.20e-167
Identity = 239/244 (97.95%), Postives = 240/244 (98.36%), Query Frame = 0 

Query: 1   MEAGIFFAVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60
           MEAGIFF VTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN
Sbjct: 1   MEAGIFFTVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60

Query: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW
Sbjct: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120

Query: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180
           LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ
Sbjct: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180

Query: 181 VGFAAESAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           VGFAAE AEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 VGFAAELAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

Query: 241 VLCL 244
            + L
Sbjct: 241 AVIL 244

[Close]
BLAST of MELO3C012038.jh1.t2 vs. ExPASy TrEMBL
Match: A0A1S3BFC6 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489053 PE=4 SV=1)

HSP 1 Score: 474 bits (1219), Expect = 2.20e-167
Identity = 239/244 (97.95%), Postives = 240/244 (98.36%), Query Frame = 0 

Query: 1   MEAGIFFAVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60
           MEAGIFF VTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN
Sbjct: 1   MEAGIFFTVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60

Query: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW
Sbjct: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120

Query: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180
           LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ
Sbjct: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180

Query: 181 VGFAAESAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           VGFAAE AEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 VGFAAELAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

Query: 241 VLCL 244
            + L
Sbjct: 241 AVIL 244

[Close]
BLAST of MELO3C012038.jh1.t2 vs. ExPASy TrEMBL
Match: A0A0A0KQF1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G603980 PE=4 SV=1)

HSP 1 Score: 439 bits (1130), Expect = 7.89e-154
Identity = 224/244 (91.80%), Postives = 230/244 (94.26%), Query Frame = 0 

Query: 1   MEAGIFFAVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60
           MEAGIFF +T IPWT NFKRTHSSLR SFP I+RASSSTSQRSYRGPKPST+LVADWVSN
Sbjct: 1   MEAGIFFPLTSIPWTFNFKRTHSSLRPSFPLIVRASSSTSQRSYRGPKPSTNLVADWVSN 60

Query: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           NDDTVRS PIYVGGISLL+VLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW
Sbjct: 61  NDDTVRSLPIYVGGISLLIVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120

Query: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180
           LSIRPKSITPVNPLGVE E ICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDG CI Q
Sbjct: 121 LSIRPKSITPVNPLGVENERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGTCIFQ 180

Query: 181 VGFAAESAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           VGFAAESAEG+GEAE VEAGKLMQG LYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 VGFAAESAEGNGEAEHVEAGKLMQGSLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

Query: 241 VLCL 244
            + L
Sbjct: 241 AVIL 244

[Close]
BLAST of MELO3C012038.jh1.t2 vs. ExPASy TrEMBL
Match: A0A6J1J9M5 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482990 PE=4 SV=1)

HSP 1 Score: 407 bits (1047), Expect = 3.41e-141
Identity = 210/244 (86.07%), Postives = 218/244 (89.34%), Query Frame = 0 

Query: 1   MEAGIFFAVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60
           MEAGIFF VTPI W+S+ K T   +RRSFPRIIRASS  SQ SYRGPKPS D VA+WVS 
Sbjct: 1   MEAGIFFPVTPILWSSSLKCTLCPVRRSFPRIIRASSLNSQASYRGPKPSRDWVAEWVSK 60

Query: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           N+D VRS PIYVGGISLL+VLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVL GLVW
Sbjct: 61  NNDAVRSLPIYVGGISLLVVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLTGLVW 120

Query: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180
           LSIRPKSITPVNP GVE E ICSSLPD VTSELLWVWKSLSEVTCCRSLVVVYDG CI Q
Sbjct: 121 LSIRPKSITPVNPQGVECERICSSLPDLVTSELLWVWKSLSEVTCCRSLVVVYDGMCIFQ 180

Query: 181 VGFAAESAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           VGFAAESAEGDGEAE VEA KLMQGLLYKG+LKSQAQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 VGFAAESAEGDGEAEHVEASKLMQGLLYKGILKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

Query: 241 VLCL 244
            + L
Sbjct: 241 AVIL 244

[Close]
BLAST of MELO3C012038.jh1.t2 vs. ExPASy TrEMBL
Match: A0A6J1H029 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111458387 PE=4 SV=1)

HSP 1 Score: 407 bits (1047), Expect = 3.41e-141
Identity = 210/244 (86.07%), Postives = 218/244 (89.34%), Query Frame = 0 

Query: 1   MEAGIFFAVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60
           MEAGIFF VTPI W+S+ K T   +RRSFPRIIRASS  SQ SYRGPKPSTD VA+WVS 
Sbjct: 1   MEAGIFFPVTPILWSSSLKCTLCPVRRSFPRIIRASSLNSQASYRGPKPSTDWVAEWVSK 60

Query: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           N+D VRS PIYVGGISLL+VLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVL GLVW
Sbjct: 61  NNDAVRSLPIYVGGISLLVVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLTGLVW 120

Query: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180
           LSIRPKSITPVNP GVE E ICSSLPD VTSELLWVWKSLSEVTCCRSLVVVYDG CI Q
Sbjct: 121 LSIRPKSITPVNPQGVECERICSSLPDLVTSELLWVWKSLSEVTCCRSLVVVYDGMCIFQ 180

Query: 181 VGFAAESAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           VGFAAESAEGDGEAE VEA KLMQG LYKG+LKSQAQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 VGFAAESAEGDGEAEHVEASKLMQGSLYKGILKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

Query: 241 VLCL 244
            + L
Sbjct: 241 AVIL 244

[Close]
BLAST of MELO3C012038.jh1.t2 vs. TAIR 10
Match: AT1G59840.1 (cofactor assembly of complex C )

HSP 1 Score: 301.6 bits (771), Expect = 6.2e-82
Identity = 163/247 (65.99%), Postives = 192/247 (77.73%), Query Frame = 0 

Query: 1   MEAGIFFAVTPIPWTSNFKRTHSSLRRSFPRIIRA-SSSTSQ--RSYRGPKPSTDLVADW 60
           MEA I      IPW++N + +H  L   FPR IRA SSSTSQ  ++Y GPKP  +LVAD+
Sbjct: 1   MEARIILLRIQIPWSANRQFSHPPL--DFPRFIRASSSSTSQKPKTYEGPKPRKNLVADF 60

Query: 61  VSNNDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAG 120
           +S NDD VRS PIYVGG SLL VLFNR VSGIAPVADASSSQSRADLL LGLAVTN+L G
Sbjct: 61  ISKNDDLVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLALGLAVTNLLTG 120

Query: 121 LVWLSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKC 180
           LVWLSIRPKSITPVNP GVE + + S LP  + SELLW W+SL   TCC+SLV+VY+G C
Sbjct: 121 LVWLSIRPKSITPVNPKGVECKVVESDLPASMVSELLWAWESLKVATCCKSLVIVYNGIC 180

Query: 181 ILQVGFAAESAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPS 240
           ++Q+G  AES E D +   V+  KLMQG +Y+GV+KS+AQSYLANLSLYPG+SELPFLP+
Sbjct: 181 LIQIGMVAESPE-DKKTVIVKTDKLMQGSVYRGVMKSKAQSYLANLSLYPGRSELPFLPA 240

Query: 241 NTQVLCL 245
           NTQ + L
Sbjct: 241 NTQAVIL 244

[Close]
BLAST of MELO3C012038.jh1.t2 vs. TAIR 10
Match: AT1G59840.2 (cofactor assembly of complex C )

HSP 1 Score: 301.6 bits (771), Expect = 6.2e-82
Identity = 163/247 (65.99%), Postives = 192/247 (77.73%), Query Frame = 0 

Query: 1   MEAGIFFAVTPIPWTSNFKRTHSSLRRSFPRIIRA-SSSTSQ--RSYRGPKPSTDLVADW 60
           MEA I      IPW++N + +H  L   FPR IRA SSSTSQ  ++Y GPKP  +LVAD+
Sbjct: 1   MEARIILLRIQIPWSANRQFSHPPL--DFPRFIRASSSSTSQKPKTYEGPKPRKNLVADF 60

Query: 61  VSNNDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAG 120
           +S NDD VRS PIYVGG SLL VLFNR VSGIAPVADASSSQSRADLL LGLAVTN+L G
Sbjct: 61  ISKNDDLVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLALGLAVTNLLTG 120

Query: 121 LVWLSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKC 180
           LVWLSIRPKSITPVNP GVE + + S LP  + SELLW W+SL   TCC+SLV+VY+G C
Sbjct: 121 LVWLSIRPKSITPVNPKGVECKVVESDLPASMVSELLWAWESLKVATCCKSLVIVYNGIC 180

Query: 181 ILQVGFAAESAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPS 240
           ++Q+G  AES E D +   V+  KLMQG +Y+GV+KS+AQSYLANLSLYPG+SELPFLP+
Sbjct: 181 LIQIGMVAESPE-DKKTVIVKTDKLMQGSVYRGVMKSKAQSYLANLSLYPGRSELPFLPA 240

Query: 241 NTQVLCL 245
           NTQ + L
Sbjct: 241 NTQAVIL 244

The following BLAST results are available for this feature:
BLAST of MELO3C012038.jh1.t2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008446278.14.54e-16797.95PREDICTED: protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic ... [more]
KGN52433.21.22e-15391.80hypothetical protein Csa_009370 [Cucumis sativus][more]
XP_004135215.11.63e-15391.80protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucumis sa... [more]
XP_038892079.11.74e-14488.75protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic isoform X2 ... [more]
XP_038892078.16.36e-14487.70protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic isoform X1 ... [more]
BLAST of MELO3C012038.jh1.t2 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6NQK98.7e-8165.99Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Arabidop... [more]
BLAST of MELO3C012038.jh1.t2 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7ST122.20e-16797.95Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4 OS=Cucumis melo var. makuw... [more]
A0A1S3BFC62.20e-16797.95protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Cucumis ... [more]
A0A0A0KQF17.89e-15491.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G603980 PE=4 SV=1[more]
A0A6J1J9M53.41e-14186.07protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Cucurbit... [more]
A0A6J1H0293.41e-14186.07protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Cucurbit... [more]
BLAST of MELO3C012038.jh1.t2 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G59840.16.2e-8265.99cofactor assembly of complex C [more]
AT1G59840.26.2e-8265.99cofactor assembly of complex C [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021325Cofactor assembly of complex C subunit B, CCB2/CCB4PFAMPF11152CCB2_CCB4coord: 69..244
e-value: 9.9E-42
score: 142.5
IPR044705COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4PANTHERPTHR34943FAMILY NOT NAMEDcoord: 1..244

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C012038.jh1MELO3C012038.jh1gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C012038.jh1.t2.exonMELO3C012038.jh1.t2.exonexon
MELO3C012038.jh1.t2.exonMELO3C012038.jh1.t2.exon_2exon
MELO3C012038.jh1.t2.exonMELO3C012038.jh1.t2.exon_3exon
MELO3C012038.jh1.t2.exonMELO3C012038.jh1.t2.exon_4exon
MELO3C012038.jh1.t2.exonMELO3C012038.jh1.t2.exon_5exon


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C012038.jh1.t2.start_codonMELO3C012038.jh1.t2.start_codonstart_codon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C012038.jh1.t2.cdsMELO3C012038.jh1.t2.cdsCDS
MELO3C012038.jh1.t2.cdsMELO3C012038.jh1.t2.cds_2CDS
MELO3C012038.jh1.t2.cdsMELO3C012038.jh1.t2.cds_3CDS
MELO3C012038.jh1.t2.cdsMELO3C012038.jh1.t2.cds_4CDS
MELO3C012038.jh1.t2.cdsMELO3C012038.jh1.t2.cds_5CDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C012038.jh1.t2.stop_codonMELO3C012038.jh1.t2.stop_codonstop_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C012038.jh1.t2MELO3C012038.jh1.t2-proteinpolypeptide